--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/t2ps_wrapper.py	Mon Jan 27 09:28:14 2014 -0500
@@ -0,0 +1,67 @@
+"""
+Wrapper for tree2PS-fast
+Requires ps2pdf (a part of ghostscript package) to be installed
+
+t2ps_wrapper.py <taxonomy file> <output PDF file> <max_tree_level> <font_size> <max_leaves> <count_duplicate_tax_id>
+
+    taxonomy file    - tree file produced by taxonomy2tree program written by Sergei Kosakovski Pond
+    output PDF file  - tree image
+    max_tree_level   - integer from 0 to 21; 0 = show all levels
+    font_size        - integer from 2 to 255 (8 is the best)
+    max_leaves       - integer from 0 to infinity (0 = show all)
+    count_duplicate  - 0 (do not count) or 1 (count)
+    
+anton nekrutenko | anton@bx.psu.edu
+tree2PS-fast is written by Sergei Kosakovski Pond | sergeilkp@mac.com
+"""
+
+import string, sys, tempfile, subprocess
+
+def stop_err(msg):
+    sys.stderr.write(msg)
+    sys.exit()
+
+
+try:
+    tree_file = sys.argv[1]
+    pdf_file  = sys.argv[2]
+    max_tree_level = sys.argv[3]
+    font_size = sys.argv[4]
+    max_leaves = sys.argv[5]
+    dups = sys.argv[6]
+except:
+    stop_err('Check arguments\n')
+
+newick_file = tempfile.NamedTemporaryFile('w')    
+ps_file = tempfile.NamedTemporaryFile('w')
+
+# Execute taxonomy2tree
+    
+try:
+    t2t_cmd = 'taxonomy2tree %s %s %s /dev/null 1 > /dev/null 2>&1' % ( tree_file, max_tree_level, newick_file.name )
+    retcode = subprocess.call( t2t_cmd, shell=True )
+    if retcode < 0:
+        print >>sys.stderr, "Execution of taxonomy2tree terminated by signal", -retcode
+except OSError, e:
+    print >>sys.stderr, "Execution of taxonomy2tree failed:", e
+
+
+# Execute tree2PS-fast
+    
+try:
+    t2ps_cmd = 'tree2PS-fast %s %s %s %s %s %s' % ( newick_file.name, ps_file.name, max_tree_level, font_size, max_leaves, dups )
+    retcode = subprocess.call( t2ps_cmd, shell=True )
+    if retcode < 0:
+        print >>sys.stderr, "Execution of tree2PS-fast terminated by signal", -retcode
+except OSError, e:
+    print >>sys.stderr, "Execution of tree2PS-fast failed:", e
+    
+# Convert PS to PDF
+
+try:
+    ps2pdf_cmd = 'ps2pdf %s %s' % ( ps_file.name, pdf_file )
+    retcode = subprocess.call( ps2pdf_cmd, shell=True )
+    if retcode < 0:
+        print >>sys.stderr, "Execution of ps2pdf terminated by signal", -retcode
+except OSError, e:
+    print >>sys.stderr, "Execution of ps2pdf failed:", e