Mercurial > repos > devteam > tabular_to_fastq

changeset 1:92034dcbb40a draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/galaxy_sequence_utils/tabular_to_fastq commit a1517c9d22029095120643bbe2c8fa53754dd2b7
author devteam
date Wed, 11 Nov 2015 12:43:24 -0500
parents b334cd1095ea
children b8cdc0507586
files tabular_to_fastq.xml tool_dependencies.xml
diffstat 2 files changed, 6 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/tabular_to_fastq.xml	Mon Jan 27 09:27:43 2014 -0500
+++ b/tabular_to_fastq.xml	Wed Nov 11 12:43:24 2015 -0500
@@ -36,12 +36,10 @@
 
 This tool attempts to convert a tabular file containing sequencing read data to a FASTQ formatted file. The FASTQ Groomer tool should always be used on the output of this tool. 
 
-------
-
-**Citation**
-
-If you use this tool, please cite `Blankenberg D, Gordon A, Von Kuster G, Coraor N, Taylor J, Nekrutenko A; Galaxy Team. Manipulation of FASTQ data with Galaxy. Bioinformatics. 2010 Jul 15;26(14):1783-5. <http://www.ncbi.nlm.nih.gov/pubmed/20562416>`_
-
-
   </help>
+  
+  <citations>
+    <citation type="doi">10.1093/bioinformatics/btq281</citation>
+  </citations>
+  
 </tool>
--- a/tool_dependencies.xml	Mon Jan 27 09:27:43 2014 -0500
+++ b/tool_dependencies.xml	Wed Nov 11 12:43:24 2015 -0500
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
   <package name="galaxy_sequence_utils" version="1.0.0">
-      <repository changeset_revision="0643676ad5f7" name="package_galaxy_utils_1_0" owner="devteam" prior_installation_required="False" toolshed="http://toolshed.g2.bx.psu.edu" />
+      <repository changeset_revision="0643676ad5f7" name="package_galaxy_utils_1_0" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>