Mercurial > repos > devteam > tophat2
comparison tophat2_wrapper.xml @ 9:0849fa93eadb draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/tophat2 commit d930385294c447acf3d18e3a8efbe5dbea524b5d
| author | devteam |
|---|---|
| date | Sun, 01 Jan 2017 06:51:32 -0500 |
| parents | 758594ed0364 |
| children | 16c4255042be |
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| 8:758594ed0364 | 9:0849fa93eadb |
|---|---|
| 93 --no-novel-indels | 93 --no-novel-indels |
| 94 #end if | 94 #end if |
| 95 | 95 |
| 96 ## Supplying junctions parameters. | 96 ## Supplying junctions parameters. |
| 97 #if $params.own_junctions.use_junctions == "Yes": | 97 #if $params.own_junctions.use_junctions == "Yes": |
| 98 #if $params.own_junctions.gene_model_ann.use_annotations == "Yes": | 98 #if $params.own_junctions.gene_model_ann.use_annotations == "indexed" |
| 99 -G $params.own_junctions.gene_model_ann.gene_annotation_model.fields.path | |
| 100 #elif $params.own_junctions.gene_model_ann.use_annotations == "history" | |
| 99 -G $params.own_junctions.gene_model_ann.gene_annotation_model | 101 -G $params.own_junctions.gene_model_ann.gene_annotation_model |
| 100 #end if | 102 #end if |
| 101 #if $params.own_junctions.raw_juncs.use_juncs == "Yes": | 103 #if $params.own_junctions.raw_juncs.use_juncs == "Yes": |
| 102 -j $params.own_junctions.raw_juncs.raw_juncs | 104 -j $params.own_junctions.raw_juncs.raw_juncs |
| 103 #end if | 105 #end if |