Mercurial > repos > devteam > tophat2

diff tophat2_wrapper.xml @ 9:0849fa93eadb draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/tophat2 commit d930385294c447acf3d18e3a8efbe5dbea524b5d
author devteam
date Sun, 01 Jan 2017 06:51:32 -0500
parents 758594ed0364
children 16c4255042be
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--- a/tophat2_wrapper.xml	Mon May 09 10:33:50 2016 -0400
+++ b/tophat2_wrapper.xml	Sun Jan 01 06:51:32 2017 -0500
@@ -95,7 +95,9 @@
 
             ## Supplying junctions parameters.
             #if $params.own_junctions.use_junctions == "Yes":
-                #if $params.own_junctions.gene_model_ann.use_annotations == "Yes":
+                #if $params.own_junctions.gene_model_ann.use_annotations == "indexed"
+                    -G $params.own_junctions.gene_model_ann.gene_annotation_model.fields.path
+                #elif $params.own_junctions.gene_model_ann.use_annotations == "history"
                     -G $params.own_junctions.gene_model_ann.gene_annotation_model
                 #end if
                 #if $params.own_junctions.raw_juncs.use_juncs == "Yes":