# HG changeset patch
# User devteam
# Date 1483272780 18000
# Node ID 16c4255042bef9e9582aea22babf92db00471715
# Parent  0849fa93eadbe2db31105ba95c965c5c0fa4d91e
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/tophat2 commit 9f1003eecdf81dc46af598617c8a1042c9d9eb8c

diff -r 0849fa93eadb -r 16c4255042be tool_dependencies.xml
--- a/tool_dependencies.xml	Sun Jan 01 06:51:32 2017 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,9 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-  <package name="bowtie2" version="2.2.5">
-      <repository changeset_revision="30bd7eaeddbf" name="package_bowtie_2_2_5" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-    </package>
-    <package name="tophat" version="2.1.0">
-      <repository changeset_revision="ed92d4c8e7f6" name="package_tophat_2_1_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-    </package>
-</tool_dependency>
diff -r 0849fa93eadb -r 16c4255042be tophat2_wrapper.xml
--- a/tophat2_wrapper.xml	Sun Jan 01 06:51:32 2017 -0500
+++ b/tophat2_wrapper.xml	Sun Jan 01 07:13:00 2017 -0500
@@ -1,5 +1,4 @@
-<tool id="tophat2" name="TopHat" version="2.1.0">
-    <!-- Wrapper compatible with Tophat version 2.0.0+ -->
+<tool id="tophat2" name="TopHat" version="2.1.1">
     <description>Gapped-read mapper for RNA-seq data</description>
     <macros>
       <import>tophat_macros.xml</import>
@@ -33,8 +32,8 @@
       </macro>
     </macros>
     <requirements>
-        <requirement type="package" version="2.2.5">bowtie2</requirement>
-        <requirement type="package" version="2.1.0">tophat</requirement>
+        <requirement type="package" version="2.2.8">bowtie2</requirement>
+        <requirement type="package" version="2.1.1">tophat</requirement>
     </requirements>
     <stdio>
         <regex match="Exception|Error" source="both" level="fatal" description="Tool execution failed"/>