Mercurial > repos > devteam > tophat2
changeset 10:16c4255042be draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/tophat2 commit 9f1003eecdf81dc46af598617c8a1042c9d9eb8c
| author | devteam |
|---|---|
| date | Sun, 01 Jan 2017 07:13:00 -0500 |
| parents | 0849fa93eadb |
| children | |
| files | tool_dependencies.xml tophat2_wrapper.xml |
| diffstat | 2 files changed, 3 insertions(+), 13 deletions(-) [+] |
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--- a/tool_dependencies.xml Sun Jan 01 06:51:32 2017 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,9 +0,0 @@ -<?xml version="1.0"?> -<tool_dependency> - <package name="bowtie2" version="2.2.5"> - <repository changeset_revision="30bd7eaeddbf" name="package_bowtie_2_2_5" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> - </package> - <package name="tophat" version="2.1.0"> - <repository changeset_revision="ed92d4c8e7f6" name="package_tophat_2_1_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> - </package> -</tool_dependency>
--- a/tophat2_wrapper.xml Sun Jan 01 06:51:32 2017 -0500 +++ b/tophat2_wrapper.xml Sun Jan 01 07:13:00 2017 -0500 @@ -1,5 +1,4 @@ -<tool id="tophat2" name="TopHat" version="2.1.0"> - <!-- Wrapper compatible with Tophat version 2.0.0+ --> +<tool id="tophat2" name="TopHat" version="2.1.1"> <description>Gapped-read mapper for RNA-seq data</description> <macros> <import>tophat_macros.xml</import> @@ -33,8 +32,8 @@ </macro> </macros> <requirements> - <requirement type="package" version="2.2.5">bowtie2</requirement> - <requirement type="package" version="2.1.0">tophat</requirement> + <requirement type="package" version="2.2.8">bowtie2</requirement> + <requirement type="package" version="2.1.1">tophat</requirement> </requirements> <stdio> <regex match="Exception|Error" source="both" level="fatal" description="Tool execution failed"/>