Mercurial > repos > devteam > tophat_fusion_post

diff tophat_fusion_post.xml @ 10:33aafd74bb31

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Fix bugs: (a) use value rather than dbkey to get bowtie indices and (b) point to correct bowtie table.
author devteam@galaxyproject.org
date Thu, 27 Feb 2014 14:58:22 -0500
parents 7d6658b2531a
children 08f88205d596
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line diff
--- a/tophat_fusion_post.xml	Thu Feb 20 13:19:38 2014 -0500
+++ b/tophat_fusion_post.xml	Thu Feb 27 14:58:22 2014 -0500
@@ -27,7 +27,7 @@
         #end if
 
 	    ## Bowtie indices.
-	    ${__get_data_table_entry__('bowtie_indexes', 'dbkey', $accepted_hits.dbkey, 'path')}
+	    ${__get_data_table_entry__('bowtie_indexes', 'value', $accepted_hits.dbkey, 'path')}
     </command>
 
     <inputs>