Mercurial > repos > devteam > variant_eval
diff test-data/1.vcf @ 0:fbca1c0956d2 draft default tip
Imported from capsule None
| author | devteam |
|---|---|
| date | Tue, 01 Apr 2014 10:49:25 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/1.vcf Tue Apr 01 10:49:25 2014 -0400 @@ -0,0 +1,17302 @@ +##fileformat=VCFv4.0 +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT chr10 chr11 +chr10 66922 . T A 15.1 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=60 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 131337 . A G 56.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=48 PL:DP:SP:GT:GQ 89,12,0:4:0:1/1:72 +chr10 170654 . CTCT CTCTCTTTCT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 209855 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 217843 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 255907 . T G 19.1 . DP=45;AF1=0.5;CI95=0.5,0.5;DP4=18,6,0,9;MQ=49;PV4=0.00013,0.00033,0.033,0.2 PL:DP:SP:GT:GQ 49,0,255:33:39:0/1:52 +chr10 282021 . AC ACCTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 282897 . C T 60 . DP=15;AF1=1;CI95=1,1;DP4=0,0,0,11;MQ=48 PL:DP:SP:GT:GQ 93,33,0:11:0:1/1:99 +chr10 292927 . C A 5.29 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr10 294953 . A G 11.3 . DP=20;AF1=0.5005;CI95=0.5,0.5;DP4=2,0,4,0;MQ=50;PV4=1,0.13,0.27,1 PL:DP:SP:GT:GQ 41,0,27:6:0:0/1:30 +chr10 297512 . T TCTATAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 299253 . T C 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 300784 . G GTGTCTCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 302656 . C T 14.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 46,6,0:2:0:1/1:49 +chr10 316660 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 323283 . A G 99 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=7,7,4,9;MQ=49;PV4=0.44,1.1e-05,0.0014,1 PL:DP:SP:GT:GQ 154,0,255:27:4:0/1:99 +chr10 329097 . C CTG 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 329425 . T C 34 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,5;MQ=48;PV4=1,0.38,0.18,0.012 PL:DP:SP:GT:GQ 64,0,54:9:0:0/1:57 +chr10 330706 . A T 9.31 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=47 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 333917 . A C 10.2 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=48 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr10 364501 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 370384 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 373048 . T C 68 . DP=51;AF1=0.5;CI95=0.5,0.5;DP4=15,12,11,4;MQ=49;PV4=0.33,1.6e-13,0.054,1 PL:DP:SP:GT:GQ 98,0,255:42:5:0/1:99 +chr10 387060 . G A 34.1 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=50 PL:DP:SP:GT:GQ 67,18,0:6:0:1/1:90 +chr10 388388 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 394714 . G A 20.1 . DP=23;AF1=0.5004;CI95=0.5,0.5;DP4=0,2,2,1;MQ=47;PV4=0.4,1,0.043,1 PL:DP:SP:GT:GQ 50,0,28:5:4:0/1:31 +chr10 395266 . T C 6.79 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr10 395463 . G A 38 . DP=32;AF1=1;CI95=1,1;DP4=0,1,0,27;MQ=50;PV4=1,0.00028,0.37,1 PL:DP:SP:GT:GQ 71,53,0:28:0:1/1:99 +chr10 415897 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 427441 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 429977 . G A 20 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=10,4,7,2;MQ=50;PV4=1,1.1e-14,1,1 PL:DP:SP:GT:GQ 50,0,255:23:0:0/1:53 +chr10 430502 . C G 14.2 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=4,12,8,0;MQ=49;PV4=0.0013,0.00012,0.012,1 PL:DP:SP:GT:GQ 44,0,255:24:29:0/1:47 +chr10 436010 . A G 3.01 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,44:2:0:0/1:33 +chr10 443775 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 444997 . C T 7.77 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 39,9,0:3:0:1/1:63 +chr10 445061 . C T 99 . DP=31;AF1=1;CI95=1,1;DP4=0,0,22,7;MQ=47 PL:DP:SP:GT:GQ 255,87,0:29:0:1/1:99 +chr10 459773 . A G 3.01 . DP=6;AF1=0.4997;CI95=0.5,0.5;DP4=3,0,2,0;MQ=49;PV4=1,0.14,0.0034,1 PL:DP:SP:GT:GQ 30,0,83:5:0:0/1:33 +chr10 459940 . G A 36.5 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=48 PL:DP:SP:GT:GQ 69,12,0:4:0:1/1:72 +chr10 468854 . TGGAG TCACTCAGAGAGGAG 12.7 . INDEL;DP=7;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 518547 . ACTCT ACT 99 . INDEL;DP=18;AF1=1;CI95=1,1;DP4=0,0,0,15;MQ=50 PL:DP:SP:GT:GQ 249,45,0:15:0:1/1:99 +chr10 533406 . A AGAGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 537741 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 555578 . GAG GAGAAG 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 569693 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 602486 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 610506 . C A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 617928 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 667505 . A T 4.77 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,36:2:0:0/1:34 +chr10 668181 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 706998 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 731058 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 739952 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 752193 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 752862 . cc cCAc 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 758105 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 758483 . T TGTCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 835606 . C T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 922988 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 941722 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 945698 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 1042023 . a aAAC 52.2 . INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 91,6,0:2:0:1/1:49 +chr10 1043221 . T A 6.2 . DP=19;AF1=0.4999;CI95=0.5,0.5;DP4=2,1,1,1;MQ=49;PV4=1,1,0.056,0.31 PL:DP:SP:GT:GQ 35,0,50:5:0:0/1:38 +chr10 1052950 . G A 83 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=16,0,10,0;MQ=48;PV4=1,8.3e-05,7.4e-07,1 PL:DP:SP:GT:GQ 113,0,228:26:0:0/1:99 +chr10 1056310 . G C 79 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=4,0,5,0;MQ=47;PV4=1,0.039,0.00012,0.43 PL:DP:SP:GT:GQ 109,0,126:9:0:0/1:99 +chr10 1061862 . A G 37 . DP=60;AF1=0.5;CI95=0.5,0.5;DP4=2,21,5,3;MQ=49;PV4=0.0056,3.9e-07,3e-06,1 PL:DP:SP:GT:GQ 67,0,255:31:22:0/1:70 +chr10 1070461 . C T 16.1 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=1,0,3,0;MQ=48;PV4=1,0.036,0.25,1 PL:DP:SP:GT:GQ 46,0,38:4:0:0/1:40 +chr10 1070710 . C G 99 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=1,13,1,18;MQ=48;PV4=1,4e-05,0.0011,1 PL:DP:SP:GT:GQ 147,0,215:33:0:0/1:99 +chr10 1076659 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 1089274 . G C 3.07 . DP=4;AF1=0.5126;CI95=0.5,0.5;DP4=0,1,0,2;MQ=49;PV4=1,0.41,0.33,1 PL:DP:SP:GT:GQ 30,0,13:3:0:0/1:16 +chr10 1090111 . A G 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 1110855 . a aCTAAGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 1115494 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 1128904 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 1142208 . T C 64 . DP=39;AF1=1;CI95=1,1;DP4=1,1,0,33;MQ=49;PV4=0.057,0.013,0.26,1 PL:DP:SP:GT:GQ 97,46,0:35:0:1/1:99 +chr10 1150928 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 1160913 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 1167722 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 1170304 . C G 99 . DP=40;AF1=0.5;CI95=0.5,0.5;DP4=3,14,4,11;MQ=48;PV4=0.68,3.3e-09,0.00038,0.49 PL:DP:SP:GT:GQ 171,0,255:32:2:0/1:99 +chr10 1195036 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 1204080 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 1204947 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 1230744 . G A 3.57 . DP=5;AF1=0.5048;CI95=0.5,0.5;DP4=1,0,2,0;MQ=49;PV4=1,0.24,0.33,1 PL:DP:SP:GT:GQ 31,0,17:3:0:0/1:20 +chr10 1230968 . C T 8.64 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,0,0,3;MQ=49;PV4=0.1,0.00042,0.25,1 PL:DP:SP:GT:GQ 38,0,77:5:10:0/1:41 +chr10 1254961 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 1263553 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 1283529 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 1310456 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 1350849 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 1352573 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 1352644 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 1353236 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 1373459 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 1421219 . A C 12.3 . DP=12;AF1=0.5008;CI95=0.5,0.5;DP4=2,0,3,0;MQ=49;PV4=1,1,0.2,1 PL:DP:SP:GT:GQ 42,0,25:5:0:0/1:28 +chr10 1433275 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 1489768 . G A 9.31 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 1489779 . A C,T 4.61 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 42,14,33,8,0,33:3:0:1/1:49 +chr10 1490725 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 1497258 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 1518317 . G GACGTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 1523964 . a aCCT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 1527079 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 1548264 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 1558548 . TC TCGAC 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 1605240 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 1611361 . T G 3.55 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 1623213 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 1645868 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 1651015 . G GTTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 1695429 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 1703265 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 1711741 . C CCCTATTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 1721206 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 1731544 . a aTATTAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 1737777 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 1749500 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 1761488 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 1817221 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 1852754 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 1852973 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 1864370 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 1898737 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 1898746 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 1914304 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 1915241 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 1924253 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 1933036 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 1984951 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 2017468 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 2022889 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 2036480 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 2051564 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 2053274 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 2076529 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 2095607 . AGGTG A 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 2113136 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 2114416 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 2136360 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 2197980 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 2232715 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 2241737 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 2247878 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 2337671 . A ACAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 2355472 . g gCTACAGC 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 2356045 . C CCTTAAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 2372111 . gg gGCGTATg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 2395355 . T G 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 2407844 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 2498965 . C CCTCTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 2508018 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 2520704 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 2556292 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 2588027 . T A 3.02 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 2596929 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 2624329 . G C 4.77 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 2663483 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 2663892 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 2706224 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 2714085 . G C 4.77 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,44:2:0:0/1:36 +chr10 2729351 . CTT CTTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 2734777 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 2742346 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 2748997 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 2751235 . a aTGACG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 2756672 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 2796523 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 2842254 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 2879429 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 2899820 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 2919978 . T C 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 2923945 . A T,G 3.41 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 36,10,31,4,0,31:3:0:1/1:49 +chr10 2929732 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 2950233 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 2952487 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 2952601 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 2955146 . a aGACGGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 2957192 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 2963110 . G GACTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 2964207 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 2985557 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 3023958 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 3054036 . T C 52.1 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=48 PL:DP:SP:GT:GQ 85,18,0:6:0:1/1:90 +chr10 3056560 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 3063846 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 3068551 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 3075387 . AG AGAGG 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 3080755 . c cTGAGT 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 3101616 . A T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 3112082 . T TCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 3119862 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 3120010 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 3124516 . G A 5.29 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr10 3143643 . A C 11.3 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 43,9,0:3:0:1/1:63 +chr10 3145906 . A C 60 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=7,0,6,0;MQ=47;PV4=1,0.0016,0.0043,1 PL:DP:SP:GT:GQ 90,0,174:13:0:0/1:93 +chr10 3146180 . C T 18 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 50,9,0:3:0:1/1:63 +chr10 3149402 . A G 99 . DP=13;AF1=1;CI95=1,1;DP4=0,0,9,2;MQ=47 PL:DP:SP:GT:GQ 165,33,0:11:0:1/1:99 +chr10 3150973 . C T 33.2 . DP=42;AF1=0.5263;CI95=0.5,1;DP4=0,1,1,3;MQ=49;PV4=1,0.29,0.25,1 PL:DP:SP:GT:GQ 63,0,10:5:0:0/1:13 +chr10 3155237 . A G 91 . DP=11;AF1=1;CI95=1,1;DP4=0,0,10,0;MQ=48 PL:DP:SP:GT:GQ 124,30,0:10:0:1/1:99 +chr10 3155540 . A G 99 . DP=10;AF1=1;CI95=1,1;DP4=0,0,9,1;MQ=48 PL:DP:SP:GT:GQ 132,30,0:10:0:1/1:99 +chr10 3155753 . G C 99 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,1,4;MQ=45 PL:DP:SP:GT:GQ 133,15,0:5:0:1/1:75 +chr10 3158848 . C T 25.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=45 PL:DP:SP:GT:GQ 57,6,0:2:0:1/1:49 +chr10 3159234 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 3161131 . C T 11.3 . DP=17;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 43,9,0:3:0:1/1:63 +chr10 3168373 . G C 8.65 . DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 3171995 . G T 3.01 . DP=8;AF1=0.4997;CI95=0.5,0.5;DP4=4,0,3,0;MQ=50;PV4=1,0.00025,0.14,1 PL:DP:SP:GT:GQ 30,0,135:7:0:0/1:33 +chr10 3172229 . G A 24 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,4;MQ=48;PV4=1,0.0029,0.013,1 PL:DP:SP:GT:GQ 54,0,142:9:0:0/1:57 +chr10 3178815 . G C 39 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=1,11,0,5;MQ=49;PV4=1,8.8e-05,3.1e-07,1 PL:DP:SP:GT:GQ 69,0,255:17:0:0/1:72 +chr10 3191727 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 3206365 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 3212187 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 3229964 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 3238997 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 3256461 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 3266803 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 3281251 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 3302979 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 3325037 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 3364820 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 3367318 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 3370814 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 3389660 . G GTCTAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 3390765 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 3424524 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 3434101 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 3450171 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 3451517 . G GGT 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 3465444 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 3473819 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 3474112 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 3486595 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 3492888 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 3499283 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 3521236 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 3526792 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 3539155 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 3584507 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 3586349 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 3590536 . AAGAGAGAG AAGAGAG 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 3606942 . CT CATAAGT 3.81 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 3643414 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 3660946 . T A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 3694363 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 3694597 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 3698288 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 3711002 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 3715278 . T C 9.31 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=26 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 3716521 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 3720097 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 3720385 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 3743697 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 3747686 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 3753120 . tgga t 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 3756309 . TAAG T 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 3800996 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 3812387 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 3835047 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 3851381 . T A 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 3853849 . GTGT G 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 3872341 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 3873419 . A T 4.77 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 3894179 . A C 3.54 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,42:2:0:0/1:34 +chr10 3907121 . GT GTT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 3909411 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 3911829 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 3913900 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 3931867 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 3935971 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 3938767 . C G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 3956629 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 3987365 . A G 9.31 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 3992909 . C G 12.3 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 4014922 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 4017381 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 4031135 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 4031735 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 4034594 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 4049052 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 4049847 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 4053810 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 4057160 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 4069192 . T TGTGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 4083656 . ct cTGCTTGAt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 4129954 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 4135785 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 4171409 . cg cGTGATATCTGTg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 4174241 . G GTTGTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 4185639 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 4233710 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 4251583 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 4276813 . g gTTTTCTCTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 4294415 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 4332523 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 4360945 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 4395806 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 4395821 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 4420491 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 4453877 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 4481483 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 4483673 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 4495977 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 4561636 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 4574896 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 4577724 . T TCTCAACAAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 4578308 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 4581124 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 4581619 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 4613801 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 4692001 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 4711974 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 4725899 . g gTGCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 4733335 . cG cGTAG 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 4753253 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 4788010 . CGG CGGG 13.4 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 52,6,0:2:0:1/1:49 +chr10 4788081 . A ACTCCT 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 4811809 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 4869585 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 4885208 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 4892308 . GC GCAAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 4927603 . G C 7.8 . DP=9;AF1=0.5003;CI95=0.5,0.5;DP4=1,0,2,0;MQ=48;PV4=1,0,0,0.44 PL:DP:SP:GT:GQ 37,0,28:3:0:0/1:30 +chr10 4929976 . GT GTCT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 4958031 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 5010913 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 5011048 . A C 4.77 . DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,3,0;MQ=47;PV4=1,0.016,0.22,1 PL:DP:SP:GT:GQ 33,0,40:4:0:0/1:35 +chr10 5014678 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 5016241 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 5018287 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 5019959 . G A 9.52 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,2;MQ=48;PV4=1,0.087,0.23,0.12 PL:DP:SP:GT:GQ 39,0,108:5:0:0/1:42 +chr10 5026052 . A G 26 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 58,9,0:3:0:1/1:63 +chr10 5037772 . C A 39 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=45;PV4=1,1,0.055,0.41 PL:DP:SP:GT:GQ 69,0,64:6:0:0/1:66 +chr10 5038853 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 5041028 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 5042852 . T A 13.2 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=0,4,2,0;MQ=47;PV4=0.067,0.086,0.0013,1 PL:DP:SP:GT:GQ 43,0,123:6:12:0/1:46 +chr10 5045884 . G GTAGACTT 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 5050761 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 5050793 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 5079812 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 5092192 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 5101028 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 5112354 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 5123006 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 5139685 . G A 50.1 . DP=17;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=49 PL:DP:SP:GT:GQ 83,18,0:6:0:1/1:90 +chr10 5165443 . CT CTT 37.5 . INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=6,0,3,0;MQ=50;PV4=1,1,1,0.26 PL:DP:SP:GT:GQ 75,0,110:9:0:0/1:78 +chr10 5165525 . G A 20.8 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 52,6,0:2:0:1/1:49 +chr10 5165809 . tcac t 6.55 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 43,0,44:2:0:0/1:43 +chr10 5175847 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 5177350 . G A 35.5 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=48 PL:DP:SP:GT:GQ 68,12,0:4:0:1/1:72 +chr10 5190458 . ga gAa 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 5200756 . C T 6.98 . DP=2;AF1=0.5002;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,30:2:0:0/1:32 +chr10 5202060 . C T 20 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 52,9,0:3:0:1/1:63 +chr10 5242346 . G A 97.1 . DP=10;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=46 PL:DP:SP:GT:GQ 130,21,0:7:0:1/1:84 +chr10 5249377 . A T 21.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 53,6,0:2:0:1/1:49 +chr10 5249770 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 5249973 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 5260611 . TTCACT TT 33.5 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=5,0,2,0;MQ=50;PV4=1,0.00027,1,1 PL:DP:SP:GT:GQ 71,0,160:7:0:0/1:74 +chr10 5260812 . A G 16.1 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 48,9,0:3:0:1/1:63 +chr10 5260813 . GCC GCCCC 12.7 . INDEL;DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 5283318 . aaataa aaa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 5283974 . A C 7.8 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 5319029 . A AGT 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 5320897 . C T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 5349776 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 5364097 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 5366794 . G GTGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 5384423 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 5385285 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 5394537 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 5402285 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 5409210 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 5416124 . G T 11.3 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=3,5,1,3;MQ=49;PV4=1,0.13,0.009,1 PL:DP:SP:GT:GQ 41,0,152:12:0:0/1:44 +chr10 5416130 . C A 13.2 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=2,2,0,4;MQ=48;PV4=0.43,0.064,0.036,1 PL:DP:SP:GT:GQ 43,0,80:8:4:0/1:46 +chr10 5435918 . G A 18.1 . DP=53;AF1=0.5;CI95=0.5,0.5;DP4=13,10,9,2;MQ=50;PV4=0.25,3.8e-08,0.00094,0.22 PL:DP:SP:GT:GQ 48,0,255:34:6:0/1:51 +chr10 5436273 . C T 21 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=17,6,0,9;MQ=49;PV4=0.00018,2e-07,0.00093,1 PL:DP:SP:GT:GQ 51,0,255:32:37:0/1:54 +chr10 5436462 . T C 6.2 . DP=11;AF1=0.4999;CI95=0.5,0.5;DP4=0,3,0,2;MQ=47;PV4=1,1,0.3,0.011 PL:DP:SP:GT:GQ 35,0,45:5:0:0/1:38 +chr10 5437365 . A G 16.1 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=7,8,1,4;MQ=49;PV4=0.6,0.00011,0.047,1 PL:DP:SP:GT:GQ 46,0,255:20:2:0/1:49 +chr10 5455799 . tgga t 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 5459010 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 5468709 . T C 14.2 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=1,4,0,4;MQ=50;PV4=1,0.056,0.013,1 PL:DP:SP:GT:GQ 44,0,128:9:0:0/1:47 +chr10 5471122 . T C 5.54 . DP=12;AF1=0.5128;CI95=0.5,0.5;DP4=1,0,2,0;MQ=47;PV4=1,1,0.33,0.077 PL:DP:SP:GT:GQ 34,0,13:3:0:0/1:16 +chr10 5471200 . C T 15.1 . DP=23;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=50 PL:DP:SP:GT:GQ 47,9,0:3:0:1/1:63 +chr10 5471251 . T G 3.03 . DP=17;AF1=0.5029;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.077,0.33,0.071 PL:DP:SP:GT:GQ 30,0,19:3:0:0/1:22 +chr10 5473242 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 5479131 . A ATTTGCCCGAGAACGGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 5481451 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 5499040 . AT ATT 99 . INDEL;DP=18;AF1=0.5001;CI95=0.5,0.5;DP4=0,3,0,14;MQ=50;PV4=1,1,1,0.39 PL:DP:SP:GT:GQ 172,0,33:17:0:0/1:36 +chr10 5500026 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 5504879 . c cCAG 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 5505591 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 5542320 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 5567366 . G A 92 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,0,3,4;MQ=47;PV4=0.44,0.00014,0.00085,1 PL:DP:SP:GT:GQ 122,0,61:9:4:0/1:64 +chr10 5571516 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 5577742 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 5578608 . ac aCCGTTTc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 5585992 . tac tACAGac 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 5602993 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 5607598 . T G 4.77 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 5617452 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 5637224 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 5640419 . G T 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 5640435 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 5652173 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 5652185 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 5652880 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 5667066 . C A 19.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 51,6,0:2:0:1/1:49 +chr10 5682641 . C T 18.6 . DP=17;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=48 PL:DP:SP:GT:GQ 51,12,0:4:0:1/1:72 +chr10 5683860 . A ANNNNNC 3.25 . INDEL;DP=19;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,88:4:0:0/1:41 +chr10 5688395 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 5689917 . A T 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 5690879 . G A 28 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=6,0,1,3;MQ=42;PV4=0.033,0.046,0.0014,0.43 PL:DP:SP:GT:GQ 58,0,149:10:15:0/1:61 +chr10 5693379 . A G 20.8 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 52,6,0:2:0:1/1:49 +chr10 5720721 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 5751578 . CTA CTAGTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 5781628 . T G 29.5 . DP=28;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=49 PL:DP:SP:GT:GQ 62,12,0:4:0:1/1:72 +chr10 5781969 . A T 99 . DP=51;AF1=1;CI95=1,1;DP4=0,1,23,22;MQ=48;PV4=1,0.3,0.26,1 PL:DP:SP:GT:GQ 254,113,0:46:0:1/1:99 +chr10 5788126 . ACT ACTCAGTGCTCT 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 5788608 . G C 70.5 . DP=32;AF1=1;CI95=0.5,1;DP4=1,0,8,0;MQ=48;PV4=1,1,0.17,1 PL:DP:SP:GT:GQ 103,12,0:9:0:1/1:72 +chr10 5789325 . T G 21 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=3,2,0,4;MQ=47;PV4=0.17,0.16,0.093,1 PL:DP:SP:GT:GQ 51,0,107:9:8:0/1:54 +chr10 5789966 . CCTGCCTCAGCTGCC CCTGCC 99 . INDEL;DP=49;AF1=0.5;CI95=0.5,0.5;DP4=8,18,6,7;MQ=50;PV4=0.48,0.0023,1,1 PL:DP:SP:GT:GQ 255,0,255:39:3:0/1:99 +chr10 5790420 . T C 99 . DP=51;AF1=1;CI95=1,1;DP4=1,0,17,25;MQ=49;PV4=0.42,0.046,0.29,1 PL:DP:SP:GT:GQ 237,97,0:43:0:1/1:99 +chr10 5790616 . A G 99 . DP=46;AF1=0.5;CI95=0.5,0.5;DP4=4,18,4,15;MQ=49;PV4=1,5e-14,0.00042,0.44 PL:DP:SP:GT:GQ 169,0,255:41:0:0/1:99 +chr10 5793899 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 5793938 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 5798782 . T A 7.59 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 5800811 . A C 25 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=2,0,4,0;MQ=48;PV4=1,0.038,0.17,1 PL:DP:SP:GT:GQ 55,0,59:6:0:0/1:57 +chr10 5803530 . AA AAGA 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 5804531 . G A 29.1 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=50 PL:DP:SP:GT:GQ 62,18,0:6:0:1/1:90 +chr10 5804633 . TTC TTCTC 99 . INDEL;DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,5;MQ=50;PV4=1,1,0.2,1 PL:DP:SP:GT:GQ 145,0,108:9:0:0/1:99 +chr10 5823705 . tg tGCGAGGAg 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 5828019 . T C 3.54 . DP=10;AF1=0.4998;CI95=0.5,0.5;DP4=2,1,0,2;MQ=49;PV4=0.4,1,0.026,0.25 PL:DP:SP:GT:GQ 31,0,50:5:4:0/1:34 +chr10 5828942 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 5836286 . C T 12 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr10 5872773 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 5874958 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 5902105 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 5917372 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 5925820 . gg gGCTg 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=3,0,0,1;MQ=50;PV4=0.25,1,1,1 PL:DP:SP:GT:GQ 38,0,102:4:0:0/1:41 +chr10 5925971 . C A 41.5 . DP=45;AF1=0.8277;CI95=0.5,1;DP4=0,1,8,0;MQ=49;PV4=0.11,0.077,0.21,1 PL:DP:SP:GT:GQ 70,0,1:9:0:1/1:5 +chr10 5929962 . G C 18.1 . DP=53;AF1=0.5;CI95=0.5,0.5;DP4=3,5,4,3;MQ=50;PV4=0.62,0.0016,0.073,1 PL:DP:SP:GT:GQ 48,0,191:15:2:0/1:51 +chr10 5938195 . TC TCGC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 5948657 . C T 63 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=0,9,0,10;MQ=49;PV4=1,4.9e-09,0.0028,1 PL:DP:SP:GT:GQ 93,0,199:19:0:0/1:96 +chr10 5953148 . A G 5.46 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=49;PV4=1,0.43,0.21,1 PL:DP:SP:GT:GQ 34,0,35:4:0:0/1:34 +chr10 5953588 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 5967256 . A C 22 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=4,1,5,0;MQ=48;PV4=1,0.0077,0.3,1 PL:DP:SP:GT:GQ 52,0,119:10:0:0/1:55 +chr10 5971969 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 5978411 . T C 3.54 . DP=34;AF1=0.4999;CI95=0.5,0.5;DP4=1,1,0,3;MQ=50;PV4=0.4,0.05,0.25,1 PL:DP:SP:GT:GQ 31,0,37:5:0:0/1:33 +chr10 5982573 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 5989110 . C CTTA 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 6013625 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 6056837 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 6060054 . G T 10.4 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=1,19,6,0;MQ=49;PV4=3e-05,9.3e-05,0.00041,1 PL:DP:SP:GT:GQ 40,0,255:26:45:0/1:43 +chr10 6062018 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 6063674 . T C 99 . DP=35;AF1=1;CI95=1,1;DP4=0,0,0,29;MQ=46 PL:DP:SP:GT:GQ 183,87,0:29:0:1/1:99 +chr10 6091069 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 6091333 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 6101041 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 6111851 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 6113666 . G A 8.64 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=48;PV4=1,0.26,0.0099,0.36 PL:DP:SP:GT:GQ 38,0,57:4:0:0/1:41 +chr10 6114328 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 6115635 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 6124519 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 6148059 . A G 10.5 . DP=11;AF1=0.5163;CI95=0.5,1;DP4=1,0,2,0;MQ=46;PV4=1,1,0.21,1 PL:DP:SP:GT:GQ 40,0,12:3:0:0/1:15 +chr10 6154392 . T A,G 5.29 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=47 PL:DP:SP:GT:GQ 48,19,34,13,0,34:3:0:1/1:49 +chr10 6156118 . T C 92 . DP=14;AF1=1;CI95=1,1;DP4=0,0,0,13;MQ=48 PL:DP:SP:GT:GQ 125,39,0:13:0:1/1:99 +chr10 6156166 . A ACGGCCGGACC 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 6189871 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 6204234 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 6211667 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 6212611 . CAAAA CAA 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 6258015 . T C 73 . DP=23;AF1=1;CI95=1,1;DP4=0,0,18,0;MQ=49 PL:DP:SP:GT:GQ 106,54,0:18:0:1/1:99 +chr10 6258052 . G A 97 . DP=36;AF1=1;CI95=1,1;DP4=0,0,18,0;MQ=48 PL:DP:SP:GT:GQ 130,54,0:18:0:1/1:99 +chr10 6258796 . T C 9.31 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 6258840 . GCCC GCC 78.7 . INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,1,4;MQ=50 PL:DP:SP:GT:GQ 119,15,0:5:0:1/1:75 +chr10 6259239 . G A 7.83 . DP=21;AF1=0.505;CI95=0.5,0.5;DP4=0,1,0,2;MQ=47;PV4=1,0.42,1,0.17 PL:DP:SP:GT:GQ 37,0,17:3:0:0/1:20 +chr10 6261704 . T C 14.2 . DP=30;AF1=0.5063;CI95=0.5,0.5;DP4=0,1,1,2;MQ=49;PV4=1,0.13,0.33,1 PL:DP:SP:GT:GQ 44,0,16:4:0:0/1:19 +chr10 6263171 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 6267717 . C CAG 38.2 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 77,6,0:2:0:1/1:49 +chr10 6274422 . G GCAGACCC 7.38 . INDEL;DP=2;AF1=0.504;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,18:2:0:0/1:21 +chr10 6276570 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 6313715 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 6335597 . C T 3.54 . DP=5;AF1=0.4998;CI95=0.5,0.5;DP4=3,0,2,0;MQ=48;PV4=1,0.023,0.2,0.12 PL:DP:SP:GT:GQ 31,0,106:5:0:0/1:34 +chr10 6335700 . G A 99 . DP=14;AF1=1;CI95=0.5,1;DP4=1,0,7,6;MQ=46;PV4=1,0.27,0.15,1 PL:DP:SP:GT:GQ 204,10,0:14:0:1/1:60 +chr10 6342380 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 6366381 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 6373367 . cg cGGGg 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 6393908 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 6459135 . G T 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 6467722 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 6472685 . T A 3.02 . DP=3;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,26:2:0:0/1:28 +chr10 6480173 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 6480254 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 6506384 . AA AACA 3.25 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,0.33,1,0.46 PL:DP:SP:GT:GQ 38,0,80:3:0:0/1:41 +chr10 6508703 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 6509248 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 6521147 . G A 65 . DP=13;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=48 PL:DP:SP:GT:GQ 98,27,0:9:0:1/1:99 +chr10 6528054 . A G 4.77 . DP=15;AF1=0.4999;CI95=0.5,0.5;DP4=0,4,3,1;MQ=48;PV4=0.14,0.0014,0.18,0.032 PL:DP:SP:GT:GQ 33,0,118:8:8:0/1:36 +chr10 6528069 . C A 14.2 . DP=8;AF1=0.5004;CI95=0.5,0.5;DP4=0,1,0,3;MQ=46;PV4=1,0.065,0.26,1 PL:DP:SP:GT:GQ 44,0,28:4:0:0/1:31 +chr10 6533877 . A G 69 . DP=18;AF1=1;CI95=1,1;DP4=0,0,0,17;MQ=50 PL:DP:SP:GT:GQ 102,51,0:17:0:1/1:99 +chr10 6539240 . T A 21 . DP=38;AF1=0.5;CI95=0.5,0.5;DP4=1,5,1,4;MQ=48;PV4=1,1,0.07,0.23 PL:DP:SP:GT:GQ 51,0,77:11:0:0/1:54 +chr10 6593396 . ccc cCCCCGAcc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 6614727 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 6624197 . ATTG A 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 6628630 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 6646946 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 6667778 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 6682640 . T A 3.02 . DP=2;AF1=0.501;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,23:2:0:0/1:25 +chr10 6690643 . cta cTAACAta 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 6691586 . A C,G 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,2;MQ=42 PL:DP:SP:GT:GQ 42,15,30,12,0,30:2:0:1/1:41 +chr10 6703009 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 6725954 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 6730785 . TG TGGGAGGGGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 6740930 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 6754861 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 6792845 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 6806667 . g gTTCCCC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 6888002 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 6954245 . GT GTCAGTGGAGTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 6975121 . T TCTAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 6975390 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 6993120 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 7007341 . cca cCATACTca 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 7015143 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 7018447 . ac aCAGGc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 7031669 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 7046145 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 7061643 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 7070475 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 7075395 . TA TAGAAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 7085152 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 7105859 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 7123620 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 7125307 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 7157289 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 7173098 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 7174159 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 7196088 . ATCT ATCTCT 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,42:2:0:0/1:43 +chr10 7205605 . TTCT TTCTCTCTCT 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 7206067 . A C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 7214659 . TACACACACACA TACACACACA 44.5 . INDEL;DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,3;MQ=50;PV4=1,0.13,1,1 PL:DP:SP:GT:GQ 82,0,193:11:0:0/1:85 +chr10 7223321 . ag aGAAGTTGTGCTg 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 7236802 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 7239386 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 7285632 . A G 99 . DP=17;AF1=1;CI95=1,1;DP4=0,0,2,9;MQ=43 PL:DP:SP:GT:GQ 255,33,0:11:0:1/1:99 +chr10 7289044 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 7313439 . tta tTAACta 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 7318803 . T C 99 . DP=11;AF1=1;CI95=0.5,1;DP4=1,0,8,0;MQ=45;PV4=1,1,0.017,0.22 PL:DP:SP:GT:GQ 160,5,0:9:0:1/1:46 +chr10 7326305 . GT GTTTAT 7.42 . INDEL;DP=2;AF1=0.5101;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,14:2:0:0/1:17 +chr10 7361824 . cag cAGTGag 12.7 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 7371582 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 7375689 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 7376814 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 7408103 . GG GGGAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 7415769 . A AGTTAGAGGTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 7417928 . CT CTTTCACGAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 7423960 . T C 10.2 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr10 7431307 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 7462134 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 7462539 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 7503975 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 7527102 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 7550321 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 7567698 . a aGGGCG 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 7596277 . CACG C 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 7605077 . TCC TC 99 . INDEL;DP=27;AF1=1;CI95=1,1;DP4=0,0,11,6;MQ=50 PL:DP:SP:GT:GQ 255,51,0:17:0:1/1:99 +chr10 7605101 . A G 77.1 . DP=28;AF1=1;CI95=1,1;DP4=0,0,5,2;MQ=49 PL:DP:SP:GT:GQ 110,21,0:7:0:1/1:84 +chr10 7608419 . T C 11.3 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,3;MQ=47;PV4=1,0.0074,0.028,1 PL:DP:SP:GT:GQ 41,0,164:9:0:0/1:44 +chr10 7618686 . T G 26.5 . DP=19;AF1=1;CI95=0.5,1;DP4=0,0,3,1;MQ=50 PL:DP:SP:GT:GQ 59,12,0:4:0:1/1:72 +chr10 7627750 . CT CTAT 5.09 . INDEL;DP=3;AF1=0.5025;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.042 PL:DP:SP:GT:GQ 41,0,20:3:0:0/1:23 +chr10 7638157 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 7641672 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 7659790 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 7677798 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 7683289 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 7692140 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 7702304 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 7763661 . A G 99 . DP=47;AF1=1;CI95=1,1;DP4=0,0,8,8;MQ=49 PL:DP:SP:GT:GQ 161,48,0:16:0:1/1:99 +chr10 7766565 . CG CGCGTGTCCCGCGCACGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 7770494 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 7773976 . A G 99 . DP=39;AF1=1;CI95=1,1;DP4=0,0,1,21;MQ=44 PL:DP:SP:GT:GQ 255,66,0:22:0:1/1:99 +chr10 7785245 . T G 8.64 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,3;MQ=48;PV4=1,0.26,0.00019,1 PL:DP:SP:GT:GQ 38,0,117:10:0:0/1:41 +chr10 7786065 . CT CTCTTT 5.08 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,0;MQ=49;PV4=1,1,1,0.17 PL:DP:SP:GT:GQ 41,0,61:3:0:0/1:44 +chr10 7788495 . T C 99 . DP=9;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=44 PL:DP:SP:GT:GQ 181,24,0:8:0:1/1:96 +chr10 7801960 . T C 3.01 . DP=4;AF1=0.4997;CI95=0.5,0.5;DP4=0,3,0,1;MQ=47;PV4=1,0.027,0.036,1 PL:DP:SP:GT:GQ 30,0,112:4:0:0/1:33 +chr10 7805774 . A ATCCAGGTTCTT 7.35 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 7805778 . TG TGTTCTTCTCG 5.08 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,0.48,1,1 PL:DP:SP:GT:GQ 41,0,68:3:0:0/1:44 +chr10 7809300 . AC ACGC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 7822169 . C A 9.52 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=4,4,0,4;MQ=49;PV4=0.21,0.027,0.0074,1 PL:DP:SP:GT:GQ 39,0,199:12:7:0/1:42 +chr10 7851888 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 7852709 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 7866268 . C G 99 . DP=28;AF1=1;CI95=1,1;DP4=0,0,23,2;MQ=45 PL:DP:SP:GT:GQ 252,75,0:25:0:1/1:99 +chr10 7866557 . T C 99 . DP=28;AF1=1;CI95=1,1;DP4=0,0,0,18;MQ=47 PL:DP:SP:GT:GQ 133,54,0:18:0:1/1:99 +chr10 7872431 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 7875874 . G A 10.4 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,3,1,1;MQ=48;PV4=1,0.01,0.24,0.3 PL:DP:SP:GT:GQ 40,0,155:6:0:0/1:43 +chr10 7887601 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 7891228 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 7899325 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 7923728 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 7925890 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 7937957 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 7978533 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 8006644 . A G 36 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=13,0,0,9;MQ=48;PV4=2e-06,3.5e-17,6.7e-07,1 PL:DP:SP:GT:GQ 66,0,230:22:57:0/1:69 +chr10 8006798 . A G 99 . DP=56;AF1=0.6671;CI95=0.5,1;DP4=1,1,6,6;MQ=48;PV4=1,0.4,0.15,1 PL:DP:SP:GT:GQ 136,0,3:14:0:0/1:5 +chr10 8006885 . A G 11.3 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=12,5,0,6;MQ=49;PV4=0.0046,0.00081,0.015,1 PL:DP:SP:GT:GQ 41,0,255:23:23:0/1:44 +chr10 8044177 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 8055615 . G C 40 . DP=3;AF1=0.5003;CI95=0.5,0.5;DP4=1,0,2,0;MQ=45;PV4=1,1,0,0.41 PL:DP:SP:GT:GQ 70,0,30:3:0:0/1:33 +chr10 8077137 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 8086696 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 8093034 . G T 99 . DP=18;AF1=1;CI95=1,1;DP4=0,1,13,2;MQ=47;PV4=0.19,1,0.098,0.22 PL:DP:SP:GT:GQ 197,29,0:16:0:1/1:99 +chr10 8093185 . T C 99 . DP=11;AF1=1;CI95=1,1;DP4=0,0,1,7;MQ=46 PL:DP:SP:GT:GQ 146,24,0:8:0:1/1:96 +chr10 8096732 . A T 3.02 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 8108088 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 8111409 . C T 15.9 . DP=13;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=46 PL:DP:SP:GT:GQ 47,6,0:2:0:1/1:49 +chr10 8111621 . C T 19.1 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,4;MQ=49;PV4=0.43,0.12,0.13,1 PL:DP:SP:GT:GQ 49,0,84:7:0:0/1:52 +chr10 8114348 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 8115497 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 8115662 . A C 11.1 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 +chr10 8155216 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 8155269 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 8172326 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 8190833 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 8201355 . A ACAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 8203309 . C A 5.46 . DP=7;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,1,2;MQ=49;PV4=0.14,0.002,0.067,1 PL:DP:SP:GT:GQ 34,0,127:7:8:0/1:37 +chr10 8211583 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 8215968 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 8234520 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 8284765 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 8284926 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 8289417 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 8309912 . t tCTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 8337290 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 8345579 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 8352236 . T A 4.77 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 8367461 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 8387158 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 8393506 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 8399328 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 8448137 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 8492037 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 8541239 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 8561586 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 8572310 . ac aCCTc 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 8585691 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 8590004 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 8595541 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 8638759 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 8658193 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 8663011 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 8664762 . G GAATACAA 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 8677236 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 8681979 . G C 7.09 . DP=2;AF1=0.5162;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,12:2:0:0/1:15 +chr10 8711664 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 8739470 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 8739638 . G GAAC 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 8759770 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 8831961 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 8836544 . CTC CTCTTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 8857858 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 8869670 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 8885928 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 8887331 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 8890480 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 8892410 . AA AAAGTTTGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 8899512 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 8957381 . T TAGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 8998393 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 9003658 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 9038727 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 9060327 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 9066319 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 9090506 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 9101007 . t tTTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 9122324 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 9124380 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 9140496 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 9178131 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 9219755 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 9226420 . ccgac cc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 9230681 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 9233338 . tg tGAGg 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr10 9246071 . T TGGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 9264004 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 9282465 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 9308551 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 9320741 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 9329469 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 9375811 . T TTG 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 9381802 . AC ACCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 9421092 . G GGA 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 9431374 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 9436847 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 9445672 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 9455377 . t tGTGTAACGGG 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=48 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 9483577 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 9541069 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 9573300 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 9577845 . ct cTCTt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 9583624 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 9609998 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 9674671 . g gCATTGA 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 9707901 . tg tGCCGGTACGGg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 9718567 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 9765758 . A G 15.9 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 47,6,0:2:0:1/1:49 +chr10 9776952 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 9813131 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 9823086 . tgg tGGCAgg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 9854472 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 9869585 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 9876725 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 9877633 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 9931942 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 9943942 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 9982267 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 9984782 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 10041367 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 10076976 . ag aGTg 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 10078799 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 10087614 . T TGC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 10102236 . A T 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 10105108 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 10166311 . gcc gCCTCcc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 10177963 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 10192456 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 10216139 . A C 7.8 . DP=2;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,32:2:0:0/1:34 +chr10 10236738 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 10240336 . CAT CATGAT 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 10287622 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 10297026 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 10326836 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 10336308 . t tTC 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 10366936 . attt a 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 10386137 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 10390135 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 10394734 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 10413316 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 10453431 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 10500059 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 10520185 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 10563972 . A T 7.8 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,42:2:0:0/1:39 +chr10 10577142 . T A 7.8 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 10579058 . ca cATTACTa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 10595794 . t tCTAAGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 10647722 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 10661897 . A ATT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 10718402 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 10723449 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 10728832 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 10761365 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 10768080 . A G 28.8 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=43 PL:DP:SP:GT:GQ 60,6,0:2:0:1/1:49 +chr10 10770717 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 10809234 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 10862463 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 10894842 . A AGTC 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 10908099 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 10909998 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 10924603 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 10924605 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 10963614 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 11000097 . G C 3.05 . DP=2;AF1=0.5078;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,15:2:0:0/1:18 +chr10 11019815 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 11038036 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 11038048 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 11047201 . G A 16.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=44 PL:DP:SP:GT:GQ 48,6,0:2:0:1/1:49 +chr10 11068174 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 11080269 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 11084300 . GGA GGAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 11150961 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 11151506 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 11155449 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 11165556 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 11165566 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 11205256 . A AGCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 11207285 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 11208549 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 11223563 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 11258710 . G GCATGTATTCTC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 11266822 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 11277624 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 11299654 . A C 7.59 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 11299735 . A T 26.3 . DP=50;AF1=0.5336;CI95=0.5,1;DP4=0,1,6,0;MQ=49;PV4=0.14,0.089,0.3,1 PL:DP:SP:GT:GQ 56,0,9:7:0:0/1:12 +chr10 11300468 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 11317245 . GT GTT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 11330576 . C T 11.3 . DP=16;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 43,9,0:3:0:1/1:63 +chr10 11356093 . TTTT TTTTGTTT 99 . INDEL;DP=42;AF1=0.95;CI95=0.5,1;DP4=1,2,11,15;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 255,15,15:29:0:1/1:10 +chr10 11356094 . TTT TTTGTT 99 . INDEL;DP=43;AF1=0.5;CI95=0.5,0.5;DP4=1,2,5,0;MQ=50;PV4=0.11,1,1,1 PL:DP:SP:GT:GQ 149,0,70:8:10:0/1:73 +chr10 11356095 . TT TTGT 25.5 . INDEL;DP=41;AF1=0.5;CI95=0.5,0.5;DP4=1,3,3,0;MQ=50;PV4=0.14,1,1,1 PL:DP:SP:GT:GQ 63,0,88:7:8:0/1:66 +chr10 11356097 . T TGGGG 25.5 . INDEL;DP=41;AF1=0.5;CI95=0.5,0.5;DP4=3,5,2,0;MQ=50;PV4=0.44,1,1,1 PL:DP:SP:GT:GQ 63,0,211:10:4:0/1:66 +chr10 11356712 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 11361413 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 11364839 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 11368490 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 11386437 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 11394181 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 11401659 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 11402817 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 11415052 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 11419772 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 11435630 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 11504428 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 11567686 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 11621538 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 11635951 . C G 3.01 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,1,0;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,37:2:0:0/1:32 +chr10 11658605 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 11684393 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 11706156 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 11706183 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 11711594 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 11712722 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 11723537 . A T 8.44 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr10 11733812 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 11744873 . A ACTTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 11758942 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 11762095 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 11763302 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 11783818 . ACCCCC ACCCCCCC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 11789250 . G A 71.1 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=48 PL:DP:SP:GT:GQ 104,18,0:6:0:1/1:90 +chr10 11789382 . G A 99 . DP=57;AF1=1;CI95=1,1;DP4=0,1,30,20;MQ=49;PV4=0.41,0.21,0.29,1 PL:DP:SP:GT:GQ 251,127,0:51:0:1/1:99 +chr10 11789405 . G A 48 . DP=56;AF1=1;CI95=1,1;DP4=0,0,3,5;MQ=49 PL:DP:SP:GT:GQ 81,24,0:8:0:1/1:96 +chr10 11789511 . C G 99 . DP=41;AF1=1;CI95=1,1;DP4=0,0,4,31;MQ=49 PL:DP:SP:GT:GQ 205,105,0:35:0:1/1:99 +chr10 11789553 . T C 6.98 . DP=19;AF1=0.4999;CI95=0.5,0.5;DP4=0,4,0,3;MQ=49;PV4=1,0.089,1,0.49 PL:DP:SP:GT:GQ 36,0,72:7:0:0/1:39 +chr10 11797434 . GTT GT 27.5 . INDEL;DP=41;AF1=0.5;CI95=0.5,0.5;DP4=2,1,1,2;MQ=50;PV4=1,0.0086,1,0.022 PL:DP:SP:GT:GQ 65,0,82:6:0:0/1:68 +chr10 11797436 . T C 55.1 . DP=39;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=48 PL:DP:SP:GT:GQ 88,21,0:7:0:1/1:84 +chr10 11797467 . G A 99 . DP=25;AF1=0.7303;CI95=0.5,1;DP4=0,2,2,15;MQ=47;PV4=1,0.16,0.1,1 PL:DP:SP:GT:GQ 153,0,2:19:0:0/1:3 +chr10 11805339 . C T 10.4 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=8,8,4,1;MQ=47;PV4=0.34,1.2e-08,0.025,1 PL:DP:SP:GT:GQ 40,0,255:21:5:0/1:43 +chr10 11805354 . A G 99 . DP=30;AF1=1;CI95=0.5,1;DP4=1,0,7,3;MQ=45;PV4=1,1,0.3,1 PL:DP:SP:GT:GQ 139,11,0:11:0:1/1:66 +chr10 11805357 . G A 84 . DP=30;AF1=1;CI95=1,1;DP4=0,0,7,1;MQ=42 PL:DP:SP:GT:GQ 117,24,0:8:0:1/1:96 +chr10 11815591 . T A 8.65 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 11835702 . t tCA 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 11840006 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 11854795 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 11877945 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 11884553 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 11904683 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 11915971 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 11928533 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 11939877 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 11942981 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 11944672 . T TCG 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 11978499 . T G 49 . DP=39;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=49 PL:DP:SP:GT:GQ 82,24,0:8:0:1/1:96 +chr10 11985670 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 12009399 . T G 6.98 . DP=18;AF1=0.4999;CI95=0.5,0.5;DP4=1,11,5,0;MQ=49;PV4=0.00097,4.5e-05,0.0016,0.25 PL:DP:SP:GT:GQ 36,0,239:17:30:0/1:39 +chr10 12011949 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 12039782 . T TGGC 3.25 . INDEL;DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,77:4:0:0/1:41 +chr10 12076250 . CA CAGA 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 12083993 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 12095914 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 12100742 . AAAAAG AAAAAGAAAAG 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 12106064 . tc tCGGGAc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 12111935 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 12112070 . TA TACA 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 12123666 . C T 15.1 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=0,10,0,9;MQ=50;PV4=1,5.5e-11,0.15,1 PL:DP:SP:GT:GQ 45,0,211:19:0:0/1:48 +chr10 12139569 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 12140030 . C G 32.4 . DP=20;AF1=0.5554;CI95=0.5,1;DP4=0,1,0,4;MQ=48;PV4=1,1,0.14,1 PL:DP:SP:GT:GQ 62,0,7:5:0:0/1:10 +chr10 12143105 . C G 42.1 . DP=44;AF1=0.5163;CI95=0.5,1;DP4=0,1,3,1;MQ=48;PV4=0.4,0.31,0.18,1 PL:DP:SP:GT:GQ 72,0,12:5:0:0/1:15 +chr10 12149939 . C T 32.1 . DP=50;AF1=0.9966;CI95=0.5,1;DP4=0,1,1,3;MQ=48;PV4=1,1,0.16,1 PL:DP:SP:GT:GQ 61,1,0:5:0:1/1:23 +chr10 12154676 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 12160965 . C T 5.49 . DP=8;AF1=0.5049;CI95=0.5,0.5;DP4=0,2,0,3;MQ=49;PV4=1,1,0.25,1 PL:DP:SP:GT:GQ 34,0,17:5:0:0/1:20 +chr10 12160969 . T TGACGC 3.81 . INDEL;DP=9;AF1=0.5006;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 39,0,26:2:0:0/1:29 +chr10 12162790 . GTCT GTCTCTGAGAGAGAGATCT 66.4 . INDEL;DP=17;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 106,9,0:3:0:1/1:63 +chr10 12162796 . TGGGC TGACTCGGGC 7.35 . INDEL;DP=17;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 12191616 . C G 6.2 . DP=23;AF1=0.4999;CI95=0.5,0.5;DP4=8,4,0,3;MQ=48;PV4=0.077,0.029,1.4e-10,1 PL:DP:SP:GT:GQ 35,0,255:15:11:0/1:38 +chr10 12191620 . C A 32 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=10,1,0,7;MQ=48;PV4=0.00025,0.00053,0.0011,1 PL:DP:SP:GT:GQ 62,0,222:18:36:0/1:65 +chr10 12198019 . G A 99 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,10;MQ=46;PV4=1,0.043,6.9e-16,1 PL:DP:SP:GT:GQ 179,0,186:18:0:0/1:99 +chr10 12200092 . A G 5.46 . DP=15;AF1=0.4999;CI95=0.5,0.5;DP4=1,2,0,3;MQ=48;PV4=1,0.47,1,0.42 PL:DP:SP:GT:GQ 34,0,40:6:0:0/1:36 +chr10 12200125 . C T 45 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,6;MQ=48;PV4=1,0.028,0.029,1 PL:DP:SP:GT:GQ 75,0,125:12:0:0/1:78 +chr10 12202866 . A T 70 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=11,0,10,0;MQ=49;PV4=1,1.9e-11,0.018,1 PL:DP:SP:GT:GQ 100,0,220:21:0:0/1:99 +chr10 12206193 . G T 42 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=3,0,4,0;MQ=47;PV4=1,0.26,1,1 PL:DP:SP:GT:GQ 72,0,67:7:0:0/1:69 +chr10 12206361 . A C 5.46 . DP=46;AF1=0.4999;CI95=0.5,0.5;DP4=5,15,7,0;MQ=49;PV4=0.00089,0.013,7.8e-05,1 PL:DP:SP:GT:GQ 34,0,255:27:30:0/1:37 +chr10 12208532 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 12209752 . T C 99 . DP=47;AF1=0.5;CI95=0.5,0.5;DP4=10,12,9,14;MQ=49;PV4=0.77,7.1e-16,0.22,1 PL:DP:SP:GT:GQ 142,0,255:45:1:0/1:99 +chr10 12221207 . GAA G 6.56 . INDEL;DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 12221208 . A T 6.02 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr10 12238325 . TGGGAGGG TGGG 99 . INDEL;DP=24;AF1=0.5;CI95=0.5,0.5;DP4=1,6,0,9;MQ=50;PV4=0.44,0.4,1,1 PL:DP:SP:GT:GQ 193,0,174:16:0:0/1:99 +chr10 12268401 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 12279328 . T A 18 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 50,9,0:3:0:1/1:63 +chr10 12287655 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 12290167 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 12292286 . C G 99 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=11,0,11,1;MQ=47;PV4=1,5.7e-10,4.6e-06,1 PL:DP:SP:GT:GQ 171,0,217:23:0:0/1:99 +chr10 12292344 . A G 21 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=1,20,0,8;MQ=49;PV4=1,9.2e-11,3.1e-25,1 PL:DP:SP:GT:GQ 51,0,255:29:0:0/1:54 +chr10 12333644 . g gCATGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 12410639 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 12477471 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 12505853 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 12578171 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 12580644 . G T 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 12588497 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 12595427 . G A 9.31 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 12615290 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 12630561 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 12657593 . t tG 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 12682308 . A C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 12692614 . T C 4.77 . DP=2;AF1=0.5009;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,24:2:0:0/1:26 +chr10 12708720 . TAT TATCTATAGAT 7.37 . INDEL;DP=25;AF1=0.5032;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,19:2:0:0/1:22 +chr10 12708728 . T C 3.41 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 32,6,0:2:0:1/1:49 +chr10 12708729 . T TCGCATAA 12.7 . INDEL;DP=18;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 12712070 . G A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 12712229 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 12730218 . T A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 12744139 . AGC AGCTGGGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 12748998 . G GT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 12763184 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 12793975 . T TCCAGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 12794757 . TA TACGTGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 12807754 . A T 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 12836121 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 12848660 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 12858045 . G A 99 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=6,0,6,0;MQ=47;PV4=1,6e-05,0,1 PL:DP:SP:GT:GQ 132,0,169:12:0:0/1:99 +chr10 12858409 . A G 46 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,4;MQ=48;PV4=1,0.027,0.007,0.19 PL:DP:SP:GT:GQ 76,0,146:9:0:0/1:79 +chr10 12867598 . C G 79 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=7,9,5,6;MQ=49;PV4=1,2.8e-08,0.12,1 PL:DP:SP:GT:GQ 109,0,255:27:0:0/1:99 +chr10 12872705 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 12891506 . G GGCCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 12930147 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 12956433 . A G 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 12993800 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 13010164 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 13069442 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 13100381 . A G 41 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=2,2,5,0;MQ=47;PV4=0.17,0.11,0.35,0.16 PL:DP:SP:GT:GQ 71,0,101:9:8:0/1:74 +chr10 13111744 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 13167674 . TTC TTCTCTCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 13168705 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 13171571 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 13184970 . T TCAAATG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 13192767 . aa aATTa 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 13199247 . A C 6.2 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,2;MQ=46;PV4=1,0.056,1,0.068 PL:DP:SP:GT:GQ 35,0,34:3:0:0/1:34 +chr10 13201520 . A G 12 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=34 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr10 13201533 . T G,C 3.41 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=47 PL:DP:SP:GT:GQ 48,22,30,16,0,30:3:0:1/1:49 +chr10 13208106 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 13214786 . G A 50.8 . DP=40;AF1=0.6243;CI95=0.5,1;DP4=0,1,1,4;MQ=48;PV4=1,1,0.26,1 PL:DP:SP:GT:GQ 80,0,4:6:0:0/1:6 +chr10 13214812 . A G 20.1 . DP=13;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=50 PL:DP:SP:GT:GQ 53,24,0:8:0:1/1:96 +chr10 13228110 . A G 7.81 . DP=13;AF1=0.5019;CI95=0.5,0.5;DP4=2,0,3,0;MQ=48;PV4=1,1,0.0057,0.44 PL:DP:SP:GT:GQ 37,0,21:5:0:0/1:24 +chr10 13237015 . G A 99 . DP=25;AF1=1;CI95=1,1;DP4=1,0,20,0;MQ=47;PV4=1,1,0.13,1 PL:DP:SP:GT:GQ 155,40,0:21:0:1/1:99 +chr10 13239547 . A G 12 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=45 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr10 13246031 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 13246190 . C T 99 . DP=17;AF1=1;CI95=1,1;DP4=0,0,9,1;MQ=46 PL:DP:SP:GT:GQ 150,30,0:10:0:1/1:99 +chr10 13250865 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 13251324 . C G 6.2 . DP=18;AF1=0.4999;CI95=0.5,0.5;DP4=1,10,0,4;MQ=48;PV4=1,0.17,0.038,0.31 PL:DP:SP:GT:GQ 35,0,180:15:0:0/1:38 +chr10 13268161 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 13275514 . A G 33.4 . DP=17;AF1=1;CI95=0.5,1;DP4=1,0,8,0;MQ=50;PV4=1,1,0.37,1 PL:DP:SP:GT:GQ 66,13,0:9:0:1/1:65 +chr10 13276179 . A G 99 . DP=13;AF1=1;CI95=1,1;DP4=0,0,7,1;MQ=46 PL:DP:SP:GT:GQ 154,24,0:8:0:1/1:96 +chr10 13276310 . C CATGCCGCT 5.08 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,72:3:0:0/1:44 +chr10 13308650 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 13308665 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 13313084 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 13337588 . G A 99 . DP=25;AF1=1;CI95=1,1;DP4=0,0,0,19;MQ=46 PL:DP:SP:GT:GQ 164,57,0:19:0:1/1:99 +chr10 13340112 . T A 6.02 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr10 13340293 . A G 18.6 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=50 PL:DP:SP:GT:GQ 51,12,0:4:0:1/1:72 +chr10 13352876 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 13370315 . C T 7.11 . DP=25;AF1=0.5206;CI95=0.5,1;DP4=1,0,2,0;MQ=48;PV4=1,1,0.26,1 PL:DP:SP:GT:GQ 36,0,11:3:0:0/1:14 +chr10 13375906 . T C 99 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,2,3;MQ=43 PL:DP:SP:GT:GQ 141,15,0:5:0:1/1:75 +chr10 13435101 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 13481427 . T A 7.8 . DP=38;AF1=0.5;CI95=0.5,0.5;DP4=8,19,2,7;MQ=50;PV4=1,5.1e-12,0.1,0.035 PL:DP:SP:GT:GQ 37,0,255:36:0:0/1:40 +chr10 13485321 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 13494594 . T C 99 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=3,19,1,15;MQ=48;PV4=0.62,4.9e-14,4e-05,1 PL:DP:SP:GT:GQ 136,0,255:38:2:0/1:99 +chr10 13506501 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 13541724 . TA TAAAACA 99 . INDEL;DP=30;AF1=0.5;CI95=0.5,0.5;DP4=16,1,7,1;MQ=50;PV4=1,0.14,0.074,0.0027 PL:DP:SP:GT:GQ 166,0,255:25:0:0/1:99 +chr10 13577625 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 13633835 . A G 25 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 57,9,0:3:0:1/1:63 +chr10 13639435 . AC ACGC 8.19 . INDEL;DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 13639766 . C T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 13652830 . A G 4.61 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr10 13653554 . A G 33 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=4,0,4,0;MQ=47;PV4=1,0.0075,0.029,1 PL:DP:SP:GT:GQ 63,0,124:8:0:0/1:66 +chr10 13653675 . T C 73 . DP=53;AF1=0.5;CI95=0.5,0.5;DP4=13,2,0,16;MQ=48;PV4=5.1e-07,0.012,0.0041,1 PL:DP:SP:GT:GQ 103,0,214:31:63:0/1:99 +chr10 13658335 . G A 17.5 . DP=20;AF1=1;CI95=0.5,1;DP4=1,0,7,0;MQ=49;PV4=1,0.27,1,1 PL:DP:SP:GT:GQ 49,7,0:8:0:1/1:57 +chr10 13661689 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 13676485 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 13683189 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 13693883 . C T 75.4 . DP=18;AF1=1;CI95=0.5,1;DP4=1,0,13,0;MQ=48;PV4=1,0.16,1,0.056 PL:DP:SP:GT:GQ 108,13,0:14:0:1/1:65 +chr10 13709869 . T TACAGCCGG 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=48 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 13743391 . C A 33 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=1,5,0,6;MQ=48;PV4=1,0.44,0.041,1 PL:DP:SP:GT:GQ 63,0,87:12:0:0/1:66 +chr10 13743517 . G A 51 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,7;MQ=49;PV4=1,0.016,0.028,1 PL:DP:SP:GT:GQ 81,0,153:14:0:0/1:84 +chr10 13750323 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 13769800 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 13782124 . A G 17.1 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 49,9,0:3:0:1/1:63 +chr10 13782496 . G A 4.77 . DP=37;AF1=0.4999;CI95=0.5,0.5;DP4=4,13,9,0;MQ=49;PV4=0.00046,1.3e-05,0.0015,1 PL:DP:SP:GT:GQ 33,0,255:26:33:0/1:36 +chr10 13782605 . G A 99 . DP=38;AF1=1;CI95=1,1;DP4=0,0,1,32;MQ=48 PL:DP:SP:GT:GQ 181,99,0:33:0:1/1:99 +chr10 13787542 . A ACCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 13799320 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 13807847 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 13813428 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 13815477 . C T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 13844326 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 13881094 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 13977906 . ccattgcatca cca 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 13988387 . A T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 14017839 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 14022285 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 14060134 . AACA AA 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 14060693 . TTGT TT 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 14066031 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 14066050 . G C 4.13 . DP=2;AF1=0.5008;CI95=0.5,0.5;DP4=0,1,0,1;MQ=40;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,24:2:0:0/1:26 +chr10 14082303 . G C 4.21 . DP=2;AF1=0.5161;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,12:2:0:0/1:15 +chr10 14094171 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 14097213 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 14156185 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 14186341 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 14241817 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 14250789 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 14256401 . C A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 14258267 . CT CTGT 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 14275204 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 14289519 . tc tCCTCc 12.7 . INDEL;DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 14303095 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 14304355 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 14320990 . T G 5.29 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr10 14351440 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 14352328 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 14356714 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 14366050 . g gGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 14368231 . G T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 14372063 . C T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 14381313 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 14382066 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 14410063 . C T 14.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 14414202 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 14448005 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 14462368 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 14493970 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 14497970 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 14503161 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 14514863 . AG AGTTTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 14519892 . G A 10.2 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr10 14519924 . A C 6.79 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr10 14529523 . t tGTCGCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 14563097 . A G 14.1 . DP=23;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 46,9,0:3:0:1/1:63 +chr10 14572300 . A G 13.5 . DP=6;AF1=0.543;CI95=0.5,1;DP4=1,0,3,0;MQ=47;PV4=1,1,0.13,0.45 PL:DP:SP:GT:GQ 43,0,8:4:0:0/1:11 +chr10 14572306 . A T 6.02 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr10 14592635 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 14611423 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 14632332 . A AGTAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 14635186 . T TGGTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 14637067 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 14663901 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 14681467 . GGA GGAGA 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 14693160 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 14700381 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 14765351 . T A 5.46 . DP=7;AF1=0.4999;CI95=0.5,0.5;DP4=0,4,1,2;MQ=39;PV4=0.43,0.0073,0.17,1 PL:DP:SP:GT:GQ 34,0,113:7:0:0/1:37 +chr10 14819973 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 14852334 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 14866927 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 14868593 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 14882003 . T G 4.77 . DP=12;AF1=0.5002;CI95=0.5,0.5;DP4=0,2,0,2;MQ=48;PV4=1,1,0.4,1 PL:DP:SP:GT:GQ 33,0,29:4:0:0/1:31 +chr10 14882003 . TT TTCGCTGCGCT 7.35 . INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 14905185 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 14906395 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 14934483 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 14963547 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 14967310 . GGAGA G 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 14976727 . G C 47 . DP=13;AF1=0.5013;CI95=0.5,0.5;DP4=0,2,1,4;MQ=48;PV4=1,0.49,0.14,0.033 PL:DP:SP:GT:GQ 77,0,23:7:0:0/1:26 +chr10 14977939 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 14981932 . G C 15.9 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=44 PL:DP:SP:GT:GQ 47,6,0:2:0:1/1:49 +chr10 14981942 . C G 16.9 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:DP:SP:GT:GQ 48,6,0:2:0:1/1:49 +chr10 15014418 . C G 44.1 . DP=10;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=47 PL:DP:SP:GT:GQ 77,21,0:7:0:1/1:84 +chr10 15014440 . A G 99 . DP=17;AF1=1;CI95=1,1;DP4=0,0,16,0;MQ=47 PL:DP:SP:GT:GQ 155,48,0:16:0:1/1:99 +chr10 15014698 . C T 5.29 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr10 15014702 . A G 13.2 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 45,9,0:3:0:1/1:63 +chr10 15023727 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 15036531 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 15057303 . g gCTGT 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 15106379 . A G 32 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=7,0,7,0;MQ=49;PV4=1,3.8e-06,3.1e-05,1 PL:DP:SP:GT:GQ 62,0,177:14:0:0/1:65 +chr10 15154974 . A G 13.9 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr10 15162964 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 15166243 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 15172078 . CAG CAGAG 3.25 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,0.14 PL:DP:SP:GT:GQ 38,0,92:4:0:0/1:41 +chr10 15173312 . T C 9.31 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=48 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 15221517 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 15234735 . TA TAAA 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 15237355 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 15263100 . C T 99 . DP=12;AF1=1;CI95=1,1;DP4=0,0,0,12;MQ=46 PL:DP:SP:GT:GQ 164,36,0:12:0:1/1:99 +chr10 15267089 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 15290696 . C T 28 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=1,12,0,4;MQ=49;PV4=1,0.18,7.5e-05,1 PL:DP:SP:GT:GQ 58,0,228:17:0:0/1:61 +chr10 15322767 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 15347616 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 15360676 . CC CCCGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 15372452 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 15376859 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 15388415 . T TCGAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 15396186 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 15396207 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 15428900 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 15449026 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 15485529 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 15486091 . A ACACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 15500468 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 15511853 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 15544750 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 15573050 . A G 99 . DP=12;AF1=1;CI95=1,1;DP4=0,0,10,0;MQ=44 PL:DP:SP:GT:GQ 186,30,0:10:0:1/1:99 +chr10 15611877 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 15640262 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 15648243 . C T 15.2 . DP=32;AF1=0.505;CI95=0.5,0.5;DP4=0,1,3,1;MQ=50;PV4=0.4,0.019,0.34,1 PL:DP:SP:GT:GQ 45,0,17:5:0:0/1:20 +chr10 15655696 . T G 9.52 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=4,0,2,1;MQ=47;PV4=0.43,0.044,1,0.28 PL:DP:SP:GT:GQ 39,0,63:7:0:0/1:42 +chr10 15669756 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 15685983 . A T 20.6 . DP=8;AF1=0.9998;CI95=0.5,1;DP4=1,0,4,0;MQ=49;PV4=1,1,0.25,1 PL:DP:SP:GT:GQ 50,2,0:5:0:1/1:37 +chr10 15693266 . TGT TGTAGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 15697393 . A T 14.2 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=1,17,8,0;MQ=49;PV4=5.8e-06,0.00016,0.0053,1 PL:DP:SP:GT:GQ 44,0,246:26:52:0/1:47 +chr10 15713541 . T C 60.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=45 PL:DP:SP:GT:GQ 93,12,0:4:0:1/1:72 +chr10 15713667 . C G 86 . DP=16;AF1=1;CI95=1,1;DP4=0,0,0,12;MQ=49 PL:DP:SP:GT:GQ 119,36,0:12:0:1/1:99 +chr10 15720866 . T A 13.9 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr10 15726159 . T G 24 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,5;MQ=49;PV4=1,0.1,1,1 PL:DP:SP:GT:GQ 54,0,58:9:0:0/1:56 +chr10 15728269 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 15729923 . C T 99 . DP=37;AF1=1;CI95=1,1;DP4=0,0,33,0;MQ=47 PL:DP:SP:GT:GQ 147,99,0:33:0:1/1:99 +chr10 15741312 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 15752619 . G GGCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 15760939 . A C 19.1 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=3,1,0,4;MQ=48;PV4=0.14,0.063,0.15,1 PL:DP:SP:GT:GQ 49,0,104:8:8:0/1:52 +chr10 15783293 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 15801258 . TC TCCTCACCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 15804694 . a aATGTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 15810275 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 15810280 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 15848318 . G T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 15865282 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 15874369 . A ATC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 15934887 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 15949600 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 15950296 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 15985072 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 15989335 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 16027306 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 16033307 . ttctct tt 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 16079971 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 16095235 . a aTCAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 16133005 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 16143359 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 16157798 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 16160492 . ACTTT A 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 16164486 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 16280024 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 16286037 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 16302424 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 16319885 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 16320233 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 16320495 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 16326927 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 16334786 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 16355076 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 16366063 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 16366096 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 16492175 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 16494946 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 16508921 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 16513396 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 16515744 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 16526840 . G A 48 . DP=21;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=50 PL:DP:SP:GT:GQ 81,27,0:9:0:1/1:99 +chr10 16547058 . A G 53.2 . DP=46;AF1=0.7303;CI95=0.5,1;DP4=0,1,6,0;MQ=47;PV4=0.14,1,0.027,1 PL:DP:SP:GT:GQ 82,0,2:7:0:0/1:3 +chr10 16556710 . T C 19.1 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=1,6,0,4;MQ=49;PV4=1,0.026,0.076,1 PL:DP:SP:GT:GQ 49,0,179:11:0:0/1:52 +chr10 16562600 . G A 33 . DP=58;AF1=0.5;CI95=0.5,0.5;DP4=9,8,6,3;MQ=50;PV4=0.68,2.8e-07,0.072,0.097 PL:DP:SP:GT:GQ 63,0,255:26:2:0/1:66 +chr10 16576504 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 16601106 . a aTCGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 16611152 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 16613165 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 16627346 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 16642901 . G GGTTCTGGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 16736977 . T C 9.49 . DP=25;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 41,9,0:3:0:1/1:63 +chr10 16748321 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 16776447 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 16797033 . A G 59 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,10;MQ=49;PV4=1,0.0019,0.099,1 PL:DP:SP:GT:GQ 89,0,99:14:0:0/1:92 +chr10 16797963 . ACTC AC 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 16843978 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 16853903 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 16856556 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 16887445 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 16905881 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 16943371 . G C 46.3 . DP=58;AF1=0.543;CI95=0.5,1;DP4=0,1,4,2;MQ=50;PV4=0.43,0.007,0.3,1 PL:DP:SP:GT:GQ 76,0,8:7:0:0/1:11 +chr10 16967401 . C T 11.1 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 +chr10 16970182 . G A 4.18 . DP=3;AF1=0.51;CI95=0.5,0.5;DP4=1,0,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,14:2:0:0/1:17 +chr10 16979751 . T A 23 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=9,5,0,7;MQ=49;PV4=0.0071,4.6e-05,0.014,1 PL:DP:SP:GT:GQ 53,0,255:21:21:0/1:56 +chr10 16997824 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 17009881 . a aACCATATC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 17024503 . G A 22.2 . DP=17;AF1=0.5207;CI95=0.5,1;DP4=0,1,3,1;MQ=49;PV4=0.4,0.12,0.34,1 PL:DP:SP:GT:GQ 52,0,11:5:0:0/1:14 +chr10 17024615 . A T 24.1 . DP=27;AF1=0.5064;CI95=0.5,0.5;DP4=0,1,0,3;MQ=48;PV4=1,0.31,0.1,1 PL:DP:SP:GT:GQ 54,0,16:4:0:0/1:19 +chr10 17030322 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 17040063 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 17075345 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 17086933 . A G 9.52 . DP=13;AF1=0.5002;CI95=0.5,0.5;DP4=2,0,3,0;MQ=49;PV4=1,0.085,0.2,0.16 PL:DP:SP:GT:GQ 39,0,30:5:0:0/1:32 +chr10 17086940 . A T 3.55 . DP=14;AF1=0.5014;CI95=0.5,0.5;DP4=2,0,3,0;MQ=50;PV4=1,0.14,1,1 PL:DP:SP:GT:GQ 31,0,22:5:0:0/1:24 +chr10 17100244 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 17113105 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 17130598 . TT TTGAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 17131442 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 17135012 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 17151714 . CTCTTC CTC 4.42 . INDEL;DP=17;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,2;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 40,0,36:4:0:0/1:38 +chr10 17156151 . A G 6.2 . DP=25;AF1=0.4999;CI95=0.5,0.5;DP4=2,7,2,2;MQ=49;PV4=0.53,0.0043,0.03,1 PL:DP:SP:GT:GQ 35,0,234:13:3:0/1:38 +chr10 17157630 . C T 99 . DP=44;AF1=0.5;CI95=0.5,0.5;DP4=2,9,4,23;MQ=49;PV4=1,4.7e-10,0.012,0.018 PL:DP:SP:GT:GQ 180,0,213:38:0:0/1:99 +chr10 17164366 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 17168042 . AA AAACA 5.08 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.22 PL:DP:SP:GT:GQ 41,0,56:3:0:0/1:44 +chr10 17168563 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 17168615 . T C 15.9 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 47,6,0:2:0:1/1:49 +chr10 17174567 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 17187287 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 17191011 . A G 3.54 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,2,0;MQ=49;PV4=1,0.17,0.21,0.48 PL:DP:SP:GT:GQ 31,0,62:4:0:0/1:34 +chr10 17196634 . TAAAA TATCAAAA 15.6 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=1,0,2,0;MQ=50;PV4=1,0.42,1,1 PL:DP:SP:GT:GQ 53,0,41:3:0:0/1:44 +chr10 17196649 . G C 3.54 . DP=6;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,2,0;MQ=49;PV4=1,0.055,0.21,1 PL:DP:SP:GT:GQ 31,0,49:4:0:0/1:34 +chr10 17199419 . C G 63 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=43 PL:DP:SP:GT:GQ 95,9,0:3:0:1/1:63 +chr10 17204139 . G A,T 36.5 . DP=17;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=46 PL:DP:SP:GT:GQ 75,18,64,6,0,64:5:0:1/1:72 +chr10 17204187 . G A 88.5 . DP=17;AF1=0.9998;CI95=0.5,1;DP4=0,1,5,4;MQ=48;PV4=1,0.23,0.28,1 PL:DP:SP:GT:GQ 118,2,0:10:0:1/1:37 +chr10 17211231 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 17216556 . C T 92 . DP=24;AF1=1;CI95=1,1;DP4=0,0,11,0;MQ=47 PL:DP:SP:GT:GQ 125,33,0:11:0:1/1:99 +chr10 17243372 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 17272648 . G C 18.1 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=4,7,4,0;MQ=48;PV4=0.077,0.052,0.00011,1 PL:DP:SP:GT:GQ 48,0,255:15:11:0/1:51 +chr10 17279224 . AAC AACTACGGCAC 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,1;MQ=50;PV4=1,1,1,0.43 PL:DP:SP:GT:GQ 38,0,96:4:0:0/1:41 +chr10 17279270 . A C 8.64 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,1,1;MQ=48;PV4=1,0.2,0.0061,1 PL:DP:SP:GT:GQ 38,0,51:4:0:0/1:41 +chr10 17305039 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 17305047 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 17362106 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 17365186 . A C 8.74 . DP=9;AF1=0.5128;CI95=0.5,0.5;DP4=0,1,0,2;MQ=46;PV4=1,1,0.042,0.14 PL:DP:SP:GT:GQ 38,0,13:3:0:0/1:16 +chr10 17421281 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 17434240 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 17476498 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 17510921 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 17512416 . G T 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 17558790 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 17560532 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 17588152 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 17601594 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 17619958 . C T 3.64 . DP=7;AF1=0.5205;CI95=0.5,0.5;DP4=0,1,0,2;MQ=47;PV4=1,1,0.3,1 PL:DP:SP:GT:GQ 31,0,11:3:0:0/1:14 +chr10 17620792 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 17623189 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 17636403 . G C 11.3 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,3;MQ=49;PV4=1,0.065,0.065,1 PL:DP:SP:GT:GQ 41,0,110:7:0:0/1:44 +chr10 17645814 . C T 85 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=0,2,4,2;MQ=47;PV4=0.43,0.026,0.057,0.41 PL:DP:SP:GT:GQ 115,0,56:8:4:0/1:59 +chr10 17646088 . T C 3.54 . DP=14;AF1=0.4998;CI95=0.5,0.5;DP4=0,3,0,3;MQ=49;PV4=1,0.077,0.079,0.22 PL:DP:SP:GT:GQ 31,0,77:6:0:0/1:34 +chr10 17653605 . G C 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 17686334 . C T 39 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=3,3,3,1;MQ=48;PV4=0.57,0.094,0.051,1 PL:DP:SP:GT:GQ 69,0,165:10:2:0/1:72 +chr10 17718013 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 17726972 . TT TTGCCCT 4.42 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 40,0,40:2:0:0/1:40 +chr10 17737028 . A G 10.4 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=9,2,6,0;MQ=50;PV4=0.51,0.01,4.5e-05,1 PL:DP:SP:GT:GQ 40,0,203:17:3:0/1:43 +chr10 17747053 . G C 13.2 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=1,17,0,12;MQ=50;PV4=1,3.9e-10,0.39,0.21 PL:DP:SP:GT:GQ 43,0,255:30:0:0/1:46 +chr10 17773371 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 17773389 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 17775063 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 18138639 . A G 13.9 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr10 18231855 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 18237298 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 18242304 . T C 99 . DP=31;AF1=1;CI95=1,1;DP4=0,0,8,15;MQ=46 PL:DP:SP:GT:GQ 255,69,0:23:0:1/1:99 +chr10 18251309 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 18251345 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 18254606 . C A 4.13 . DP=17;AF1=0.4998;CI95=0.5,0.5;DP4=1,9,0,4;MQ=50;PV4=1,0.0027,0.007,1 PL:DP:SP:GT:GQ 32,0,231:14:0:0/1:35 +chr10 18274943 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 18280016 . G A 6.98 . DP=10;AF1=0.5003;CI95=0.5,0.5;DP4=2,0,2,0;MQ=48;PV4=1,1,0.065,1 PL:DP:SP:GT:GQ 36,0,29:4:0:0/1:31 +chr10 18285348 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 18292428 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 18292446 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 18298932 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 18315373 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 18331799 . A C 12.3 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=49;PV4=1,1,0.074,1 PL:DP:SP:GT:GQ 42,0,43:6:0:0/1:42 +chr10 18340121 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 18353726 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 18405070 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 18439747 . C T 51.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=46 PL:DP:SP:GT:GQ 84,12,0:4:0:1/1:72 +chr10 18446561 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 18454685 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 18533770 . c cTT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 18561887 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 18568160 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 18596796 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 18727725 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 18737521 . c cTCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 18774450 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 18774471 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 18789252 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 18789671 . A C 9.31 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 18803915 . A C 6.98 . DP=15;AF1=0.4999;CI95=0.5,0.5;DP4=2,2,3,0;MQ=49;PV4=0.43,0.11,0.065,1 PL:DP:SP:GT:GQ 36,0,80:7:4:0/1:39 +chr10 18823250 . T C 12 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=44 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr10 18828663 . G T 17.1 . DP=8;AF1=0.6671;CI95=0.5,1;DP4=0,1,1,2;MQ=49;PV4=1,1,0.26,0.1 PL:DP:SP:GT:GQ 46,0,3:4:0:0/1:5 +chr10 18828721 . CAAA CAAAAA 99 . INDEL;DP=15;AF1=1;CI95=1,1;DP4=0,0,0,12;MQ=50 PL:DP:SP:GT:GQ 252,36,0:12:0:1/1:99 +chr10 18828723 . AAG AAGAG 96.5 . INDEL;DP=16;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=50 PL:DP:SP:GT:GQ 137,21,0:7:0:1/1:84 +chr10 18836957 . C T 3.28 . DP=9;AF1=0.5716;CI95=0.5,1;DP4=0,1,2,0;MQ=49;PV4=0.33,1,1,1 PL:DP:SP:GT:GQ 30,0,6:3:0:0/1:8 +chr10 18837285 . T C 25.5 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=50 PL:DP:SP:GT:GQ 58,12,0:4:0:1/1:72 +chr10 18868631 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 18871213 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 18872872 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 18898916 . T C 6.98 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=48;PV4=1,0.45,0.048,1 PL:DP:SP:GT:GQ 36,0,37:4:0:0/1:36 +chr10 18903605 . A C 29 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=45 PL:DP:SP:GT:GQ 61,9,0:3:0:1/1:63 +chr10 18931512 . T C 99 . DP=22;AF1=1;CI95=1,1;DP4=0,1,0,20;MQ=44;PV4=1,1,0.0023,1 PL:DP:SP:GT:GQ 222,47,0:21:0:1/1:99 +chr10 18937579 . AAAGAAG AAAGAAGAAG 19.5 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=50;PV4=1,1,0.19,1 PL:DP:SP:GT:GQ 57,0,83:6:0:0/1:60 +chr10 18957647 . T G 99 . DP=27;AF1=1;CI95=1,1;DP4=0,0,1,18;MQ=48 PL:DP:SP:GT:GQ 164,57,0:19:0:1/1:99 +chr10 19010724 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 19026387 . ACT A 3.25 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 19026886 . G A 20 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,4;MQ=49;PV4=1,0.0055,0.092,1 PL:DP:SP:GT:GQ 50,0,161:10:0:0/1:53 +chr10 19027478 . G A 37 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=5,5,6,0;MQ=49;PV4=0.093,0.0039,1.2e-07,1 PL:DP:SP:GT:GQ 67,0,255:16:10:0/1:70 +chr10 19072792 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 19072797 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 19091591 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 19139024 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 19160979 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 19176770 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 19209487 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 19293206 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 19309467 . t tTGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 19311918 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 19312899 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 19351043 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 19355861 . tt tTAGATTTTATGAGGt 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 19408059 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 19433630 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 19436928 . C CAGTCG 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 19528656 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 19541152 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 19633941 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 19638462 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 19658690 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 19667147 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 19694913 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 19794038 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 19808313 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 19820714 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 19830942 . CAAAA CA 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 19868214 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 19894830 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 19910989 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 19921743 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 19939805 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 19985215 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 19995903 . T A 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 20070047 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 20093007 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 20098326 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 20117318 . C T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 20137292 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 20162981 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 20213524 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 20213631 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 20257782 . T TCTTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 20258987 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 20261545 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 20296454 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 20354296 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 20406347 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 20406351 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 20432411 . G A 58.1 . DP=7;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=48 PL:DP:SP:GT:GQ 91,21,0:7:0:1/1:84 +chr10 20438863 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 20446540 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 20462052 . A AGTCGTCT 12.7 . INDEL;DP=8;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 20486215 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 20506418 . G A 99 . DP=55;AF1=0.5;CI95=0.5,0.5;DP4=18,11,11,12;MQ=48;PV4=0.4,5.8e-12,7.3e-17,1 PL:DP:SP:GT:GQ 207,0,255:52:4:0/1:99 +chr10 20511505 . T TTCAAACCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 20534333 . A G 99 . DP=55;AF1=0.5;CI95=0.5,0.5;DP4=22,11,9,4;MQ=48;PV4=1,5.1e-06,2.8e-15,0.003 PL:DP:SP:GT:GQ 200,0,255:46:0:0/1:99 +chr10 20562026 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 20568524 . T C 32 . DP=5;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,4,0;MQ=48;PV4=1,0.0054,0.16,1 PL:DP:SP:GT:GQ 62,0,33:5:0:0/1:36 +chr10 20573980 . A ACCTTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 20585605 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 20604764 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 20615538 . T G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 20631347 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 20646547 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 20668453 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 20723668 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 20732346 . C T 10.2 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=49 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr10 20740586 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 20759294 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 20782965 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 20813244 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 20852075 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 20879956 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 20930737 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 20969525 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 20970597 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 20985564 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 20992226 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 21014889 . A T 4.77 . DP=2;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,1,0;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,27:2:0:0/1:29 +chr10 21018539 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 21070217 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 21091805 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 21098688 . T G 3.54 . DP=12;AF1=0.4998;CI95=0.5,0.5;DP4=6,0,3,0;MQ=49;PV4=1,0.16,0.01,1 PL:DP:SP:GT:GQ 31,0,101:9:0:0/1:34 +chr10 21104534 . A C 10.6 . DP=11;AF1=0.5263;CI95=0.5,1;DP4=1,0,3,0;MQ=48;PV4=1,0.28,1,0.47 PL:DP:SP:GT:GQ 40,0,10:4:0:0/1:13 +chr10 21104535 . A T 5.47 . DP=11;AF1=0.5015;CI95=0.5,0.5;DP4=2,0,2,0;MQ=48;PV4=1,1,0.029,1 PL:DP:SP:GT:GQ 34,0,22:4:0:0/1:25 +chr10 21104613 . T C 11.3 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=1,16,2,3;MQ=50;PV4=0.12,8.5e-06,0.00013,0.41 PL:DP:SP:GT:GQ 41,0,255:22:9:0/1:44 +chr10 21115332 . T C 17.1 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=3,0,4,0;MQ=49;PV4=1,0.038,0.16,0.49 PL:DP:SP:GT:GQ 47,0,79:7:0:0/1:50 +chr10 21120116 . A G 58 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=17,0,12,0;MQ=49;PV4=1,1e-11,1e-10,1 PL:DP:SP:GT:GQ 88,0,239:29:0:0/1:91 +chr10 21137019 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 21139216 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 21139294 . A ACGAACGCTTGC 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 21141469 . T C 37 . DP=17;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=49 PL:DP:SP:GT:GQ 70,27,0:9:0:1/1:99 +chr10 21142950 . A T 6.02 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr10 21147133 . A T 6.79 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=42 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr10 21171173 . g gCGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 21172102 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 21176945 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 21178780 . A G 3.54 . DP=20;AF1=0.4998;CI95=0.5,0.5;DP4=3,1,2,0;MQ=49;PV4=1,0.35,0.00017,1 PL:DP:SP:GT:GQ 31,0,88:6:0:0/1:34 +chr10 21181442 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 21182448 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 21205345 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 21245697 . A G 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 21255162 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 21276302 . T G 4.77 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,44:2:0:0/1:36 +chr10 21277883 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 21279703 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 21319000 . G A 4.13 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,2;MQ=43;PV4=1,0.0068,0.026,0.077 PL:DP:SP:GT:GQ 32,0,41:3:0:0/1:34 +chr10 21319010 . A C 62 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,4;MQ=45;PV4=1,0.0093,0.023,0.27 PL:DP:SP:GT:GQ 92,0,74:6:0:0/1:77 +chr10 21319705 . G T 34 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,3;MQ=45;PV4=0.4,1,0.051,1 PL:DP:SP:GT:GQ 64,0,39:5:0:0/1:42 +chr10 21339698 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 21350826 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 21355042 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 21378160 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 21382589 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 21386615 . GT GTCTGGTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 21401765 . T C 21 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=49 PL:DP:SP:GT:GQ 53,9,0:3:0:1/1:63 +chr10 21414892 . C G 99 . DP=35;AF1=1;CI95=1,1;DP4=0,0,3,28;MQ=49 PL:DP:SP:GT:GQ 201,93,0:31:0:1/1:99 +chr10 21430083 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 21435340 . ACACTC AC 99 . INDEL;DP=60;AF1=0.5;CI95=0.5,0.5;DP4=12,18,6,15;MQ=50;PV4=0.55,1,1,1 PL:DP:SP:GT:GQ 255,0,255:51:3:0/1:99 +chr10 21437445 . G A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 21477647 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 21515638 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 21526523 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 21549839 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 21558102 . CT CTTAT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 21571385 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 21615784 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 21622030 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 21661948 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 21677509 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 21694896 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 21705615 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 21706830 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 21759405 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 21760159 . C G 4.2 . DP=2;AF1=0.9966;CI95=0.5,1;DP4=1,0,0,1;MQ=30;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,1,0:2:0:1/1:23 +chr10 21762607 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 21812972 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 21835046 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 21854943 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 21875209 . T TCACCCCACGGC 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 21884323 . T A 6.2 . DP=13;AF1=0.4999;CI95=0.5,0.5;DP4=2,1,0,3;MQ=49;PV4=0.4,0.19,0.1,1 PL:DP:SP:GT:GQ 35,0,69:6:4:0/1:38 +chr10 21888311 . A C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 21900476 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 21917713 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 21925020 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 21926169 . t tTTGCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 21926525 . ag aGTGAGAGCg 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 21931316 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 21936402 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 21946613 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 22022400 . A AGC 5.08 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.22 PL:DP:SP:GT:GQ 41,0,46:3:0:0/1:43 +chr10 22040779 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 22058925 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 22063990 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 22088505 . t tCCTCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 22159387 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 22164027 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 22169025 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 22171185 . A C 6.21 . DP=9;AF1=0.5019;CI95=0.5,0.5;DP4=2,0,3,0;MQ=49;PV4=1,1,0.19,1 PL:DP:SP:GT:GQ 35,0,21:5:0:0/1:24 +chr10 22218112 . G C 9.6 . DP=6;AF1=0.5101;CI95=0.5,0.5;DP4=0,1,0,2;MQ=46;PV4=1,1,1,0.3 PL:DP:SP:GT:GQ 39,0,14:3:0:0/1:17 +chr10 22221587 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 22233163 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 22263133 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 22275415 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 22291745 . T A 4.77 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 22315808 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 22327530 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 22337752 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 22339660 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 22395260 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 22411480 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 22423574 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 22427016 . c cGGATGAGA 3.81 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=48 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 22443359 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 22450408 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 22458197 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 22557442 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 22558589 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 22566299 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 22601686 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 22603667 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 22607823 . A C 11.1 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=44 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 +chr10 22617918 . AC ACCCC 5.09 . INDEL;DP=5;AF1=0.5025;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.037 PL:DP:SP:GT:GQ 41,0,20:3:0:0/1:23 +chr10 22640349 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 22649010 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 22670883 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 22671042 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 22717250 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 22724525 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 22727675 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 22756805 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 22768150 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 22780773 . T TCATACTGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 22796113 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 22803010 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 22804175 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 22830719 . G C 99 . DP=35;AF1=0.8277;CI95=0.5,1;DP4=2,1,21,7;MQ=48;PV4=1,0.046,0.098,1 PL:DP:SP:GT:GQ 201,0,1:31:0:1/1:5 +chr10 22839628 . T C 40.3 . DP=18;AF1=0.543;CI95=0.5,1;DP4=1,0,4,1;MQ=48;PV4=1,0.31,0.28,1 PL:DP:SP:GT:GQ 70,0,8:6:0:0/1:11 +chr10 22842835 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 22853322 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 22855048 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 22856946 . C T 91 . DP=8;AF1=1;CI95=1,1;DP4=0,0,1,7;MQ=48 PL:DP:SP:GT:GQ 124,24,0:8:0:1/1:96 +chr10 22861474 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 22862118 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 22870762 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 22875295 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 22896779 . C T 51 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=44 PL:DP:SP:GT:GQ 83,9,0:3:0:1/1:63 +chr10 22898553 . T G 12.3 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=8,0,4,0;MQ=48;PV4=1,0.039,0.047,1 PL:DP:SP:GT:GQ 42,0,146:12:0:0/1:45 +chr10 22898556 . A C 23 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=4,0,4,0;MQ=47;PV4=1,0.039,0.024,1 PL:DP:SP:GT:GQ 53,0,106:8:0:0/1:56 +chr10 22939572 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 22942178 . G A 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 22955961 . AAAAATA AA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 22956876 . A T 7.59 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=49 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 23009405 . AA AACTGTGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 23012836 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 23062705 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 23073724 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 23079836 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 23092095 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 23109543 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 23118486 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 23191990 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 23193496 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 23242996 . t tTCCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 23249104 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 23291048 . T C 15.2 . DP=8;AF1=0.5128;CI95=0.5,0.5;DP4=0,1,0,3;MQ=48;PV4=1,0.21,0.11,0.35 PL:DP:SP:GT:GQ 45,0,13:4:0:0/1:16 +chr10 23296137 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 23299017 . A G 7.89 . DP=2;AF1=0.5128;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,13:2:0:0/1:16 +chr10 23315954 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 23341661 . a aTTCTCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 23381659 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 23382132 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 23409588 . A ATT 5.08 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.28 PL:DP:SP:GT:GQ 41,0,55:3:0:0/1:44 +chr10 23426671 . T G 13.9 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr10 23482850 . G A 39.1 . DP=19;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=49 PL:DP:SP:GT:GQ 72,21,0:7:0:1/1:84 +chr10 23491503 . T TCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 23518618 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 23523618 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 23547338 . T A 4.13 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=0,2,1,0;MQ=48;PV4=0.33,0.45,0,1 PL:DP:SP:GT:GQ 32,0,65:3:0:0/1:35 +chr10 23550940 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 23552796 . G C 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 23567713 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 23640511 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 23641087 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 23661232 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 23688543 . A C 4.61 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr10 23693234 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 23721107 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 23737693 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 23757819 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 23765883 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 23777973 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 23794669 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 23837797 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 23935282 . CTAGATTTTA CTA 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 23946721 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 23954899 . C T 7.8 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 23964059 . A C 7.8 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 23973908 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 23977060 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 23995677 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 24028158 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 24037438 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 24059678 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 24090843 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 24102755 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 24106379 . T G 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 24124860 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 24164343 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 24168266 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 24169895 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 24203975 . A T 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 24233275 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 24276673 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 24283071 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 24332573 . G A 12.3 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 24345070 . C CTATTTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 24345650 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 24357819 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 24373487 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 24402613 . G T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 24412046 . gc gCTATTTTc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 24424210 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 24467851 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 24470332 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 24483516 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 24496177 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 24505055 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 24527059 . G GGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 24530360 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 24564830 . C T 9.56 . DP=29;AF1=0.505;CI95=0.5,0.5;DP4=0,1,0,3;MQ=50;PV4=1,0.083,0.33,1 PL:DP:SP:GT:GQ 39,0,17:4:0:0/1:20 +chr10 24564859 . A G 13.2 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,11,0,5;MQ=49;PV4=1,2.7e-05,2.1e-05,0.068 PL:DP:SP:GT:GQ 43,0,215:16:0:0/1:46 +chr10 24643207 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 24646710 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 24672258 . C CAGTTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 24714580 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 24727492 . C G 12.3 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,2;MQ=48;PV4=1,0.028,0.0038,1 PL:DP:SP:GT:GQ 42,0,153:7:0:0/1:45 +chr10 24740862 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 24759438 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 24762465 . A G 58 . DP=56;AF1=0.5;CI95=0.5,0.5;DP4=2,5,5,6;MQ=48;PV4=0.64,0.002,0.15,1 PL:DP:SP:GT:GQ 88,0,150:18:2:0/1:91 +chr10 24784206 . T C 3.01 . DP=10;AF1=0.4998;CI95=0.5,0.5;DP4=0,3,0,2;MQ=49;PV4=1,0.36,0.0034,1 PL:DP:SP:GT:GQ 30,0,52:5:0:0/1:33 +chr10 24786291 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 24802141 . T C 8.66 . DP=7;AF1=0.5015;CI95=0.5,0.5;DP4=1,0,2,0;MQ=48;PV4=1,0.21,0.17,0.24 PL:DP:SP:GT:GQ 38,0,22:3:0:0/1:25 +chr10 24830554 . C CGCGCGA 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 24849578 . C A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 24849657 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 24873369 . C G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 24873995 . C G 3.98 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 33,6,0:2:0:1/1:49 +chr10 24878129 . G A 6.79 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr10 24880232 . C G 4.77 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 24880712 . G A 25.5 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=49 PL:DP:SP:GT:GQ 58,12,0:4:0:1/1:72 +chr10 24880899 . C G 3.59 . DP=3;AF1=0.51;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,14:2:0:0/1:17 +chr10 24884779 . GAAAAAAAA GAAAAAAA,GAAAAAAAAA 28.5 . INDEL;DP=21;AF1=1;CI95=1,1;DP4=0,0,11,3;MQ=50 PL:DP:SP:GT:GQ 69,39,70,0,28,67:14:0:1/1:99 +chr10 24889383 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 24889901 . T G 94 . DP=23;AF1=1;CI95=1,1;DP4=0,1,0,19;MQ=47;PV4=1,0.38,0.15,1 PL:DP:SP:GT:GQ 127,33,0:20:0:1/1:99 +chr10 24896805 . T C 4.77 . DP=5;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,1;MQ=45;PV4=1,1,0.11,1 PL:DP:SP:GT:GQ 33,0,43:3:0:0/1:36 +chr10 24908430 . G T 5.46 . DP=13;AF1=0.4999;CI95=0.5,0.5;DP4=2,1,3,0;MQ=50;PV4=1,0.011,1,0.0089 PL:DP:SP:GT:GQ 34,0,106:6:0:0/1:37 +chr10 24909712 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 24915375 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 24929228 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 24949743 . G C 41 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=46 PL:DP:SP:GT:GQ 73,9,0:3:0:1/1:63 +chr10 24949895 . G T 38 . DP=8;AF1=0.5002;CI95=0.5,0.5;DP4=0,1,5,0;MQ=47;PV4=0.17,1.4e-05,0.21,1 PL:DP:SP:GT:GQ 68,0,32:6:0:0/1:35 +chr10 24949901 . C T 18.1 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=2,1,2,0;MQ=46;PV4=1,1,0.0057,0.41 PL:DP:SP:GT:GQ 48,0,69:5:0:0/1:51 +chr10 24959320 . T G 6.36 . DP=8;AF1=0.5262;CI95=0.5,1;DP4=0,1,0,3;MQ=49;PV4=1,0.28,0.33,0.11 PL:DP:SP:GT:GQ 35,0,10:4:0:0/1:13 +chr10 24964343 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 24982001 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 24989171 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 25000133 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 25020356 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 25035761 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 25049852 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 25062338 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 25074367 . g gACATA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 25091751 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 25109228 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 25142026 . T TTTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 25145181 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 25149612 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 25152926 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 25156443 . T TGA 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 25175792 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 25181296 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 25195328 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 25196566 . T TCTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 25203253 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 25232308 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 25242523 . C CTGTCTCTAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 25252099 . A T 4.13 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,1,0;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,36:2:0:0/1:34 +chr10 25281468 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 25326618 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 25373322 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 25388883 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 25394178 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 25407530 . TGG TGGGGG 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 25414815 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 25419172 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 25433221 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 25469239 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 25481970 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 25505099 . C T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 25529710 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 25565557 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 25574194 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 25631568 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 25656602 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 25684768 . T C 24 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=6,0,2,0;MQ=48;PV4=1,0.015,0.00019,1 PL:DP:SP:GT:GQ 54,0,174:8:0:0/1:57 +chr10 25695747 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 25700509 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 25724296 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 25733895 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 25755678 . G C 30 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,9,0,5;MQ=49;PV4=1,0.1,0.0013,0.13 PL:DP:SP:GT:GQ 60,0,154:14:0:0/1:63 +chr10 25755716 . Tacacacacacacacacaca TACacacacacacacacacaca 12.7 . INDEL;DP=10;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 25755732 . cacataca caca 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 25789973 . ATGG ATGGTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 25797774 . tg tGGGg 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 25802650 . t tGG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 25825969 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 25861632 . C T 87 . DP=40;AF1=0.5;CI95=0.5,0.5;DP4=4,16,3,15;MQ=49;PV4=1,1.1e-15,0.014,1 PL:DP:SP:GT:GQ 117,0,255:38:0:0/1:99 +chr10 25862838 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 25885765 . T G 3.01 . DP=19;AF1=0.4997;CI95=0.5,0.5;DP4=0,9,0,4;MQ=49;PV4=1,0.23,0.00066,0.052 PL:DP:SP:GT:GQ 30,0,118:13:0:0/1:33 +chr10 25888180 . A G 95.4 . DP=43;AF1=1;CI95=0.5,1;DP4=0,1,9,2;MQ=48;PV4=0.25,0.45,0.19,1 PL:DP:SP:GT:GQ 128,13,0:12:0:1/1:65 +chr10 25916827 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 25935332 . A ATTTAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 25942395 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 25965204 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 25969301 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 25987085 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 25991954 . gg gGCTATg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 25998967 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 26081084 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 26087479 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 26093713 . C CTGAACAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 26097794 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 26100643 . c cGTCGA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 26123606 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 26154450 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 26189856 . ata aTAGTta 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 26285537 . A C 22 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=47 PL:DP:SP:GT:GQ 54,9,0:3:0:1/1:63 +chr10 26304985 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 26309385 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 26310341 . GTT GTTCTCGGACTT 7.62 . INDEL;DP=2;AF1=0.543;CI95=0.5,1;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,8:2:0:0/1:11 +chr10 26324557 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 26357650 . AC ACGTAGTGTC 5.79 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 42,0,44:2:0:0/1:43 +chr10 26357748 . G A 99 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=13,9,8,7;MQ=48;PV4=0.75,7.4e-08,7.6e-11,1 PL:DP:SP:GT:GQ 213,0,255:37:1:0/1:99 +chr10 26357885 . A ACGC 5.08 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,57:3:0:0/1:44 +chr10 26360035 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 26399950 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 26414552 . AG AGCTG 7.57 . INDEL;DP=5;AF1=0.5336;CI95=0.5,1;DP4=0,1,0,1;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,9:2:0:0/1:12 +chr10 26427899 . G GCC 5.08 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 26443747 . T C 14.2 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=2,2,0,3;MQ=48;PV4=0.43,0.38,0.029,1 PL:DP:SP:GT:GQ 44,0,82:7:4:0/1:47 +chr10 26458830 . c cAGAGACCCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 26460161 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 26463130 . C A 61 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=14,11,2,14;MQ=50;PV4=0.0082,1.9e-16,0.014,1 PL:DP:SP:GT:GQ 91,0,255:41:21:0/1:94 +chr10 26463507 . A G 6.79 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr10 26463513 . T A 6.98 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=48;PV4=1,0.42,0.0061,0.051 PL:DP:SP:GT:GQ 36,0,38:4:0:0/1:37 +chr10 26510364 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 26514979 . T A 3.01 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,44:2:0:0/1:33 +chr10 26534937 . C T 19.1 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=2,8,0,4;MQ=49;PV4=1,0.033,0.00074,1 PL:DP:SP:GT:GQ 49,0,239:14:0:0/1:52 +chr10 26534985 . A ACAGAGA 7.35 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 26559732 . T G 49 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,9;MQ=49;PV4=1,0.027,0.037,1 PL:DP:SP:GT:GQ 79,0,67:13:0:0/1:70 +chr10 26562658 . T C 14.2 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,4;MQ=49;PV4=1,0.0016,0.33,0.01 PL:DP:SP:GT:GQ 44,0,113:10:0:0/1:47 +chr10 26567492 . ac aCCCGTCc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 26583312 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 26593934 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 26598614 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 26676296 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 26676611 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 26681008 . C CATA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 26696506 . A AAC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 26701154 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 26723497 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 26735923 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 26738081 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 26754271 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 26774337 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 26781388 . G A 99 . DP=23;AF1=1;CI95=1,1;DP4=0,0,0,18;MQ=48 PL:DP:SP:GT:GQ 150,54,0:18:0:1/1:99 +chr10 26802653 . G A 29.4 . DP=10;AF1=0.5554;CI95=0.5,1;DP4=0,1,0,3;MQ=45;PV4=1,1,0.12,1 PL:DP:SP:GT:GQ 59,0,7:4:0:0/1:10 +chr10 26815521 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 26830672 . T C 4.77 . DP=3;AF1=0.5005;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.14,0.33,1 PL:DP:SP:GT:GQ 33,0,26:3:0:0/1:28 +chr10 26849292 . G C 6.79 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr10 26855591 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 26877005 . AGC AGTGGC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 26877393 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 26877700 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 26910525 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 26911761 . AT ATTT 3.25 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 26948411 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 26955910 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 26995907 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 27007312 . CCTC CCTCTCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 27009334 . A G 77 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=0,15,0,18;MQ=49;PV4=1,0.0004,0.0048,1 PL:DP:SP:GT:GQ 107,0,190:33:0:0/1:99 +chr10 27035296 . A T 8.64 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=1,11,5,0;MQ=49;PV4=0.00097,0.0046,0.12,1 PL:DP:SP:GT:GQ 38,0,217:17:30:0/1:41 +chr10 27035414 . G T 8.64 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,5;MQ=48;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,64:11:0:0/1:41 +chr10 27078026 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 27082119 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 27141395 . c cTCA 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 27176042 . A ATATGGGCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 27176732 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 27181324 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 27183981 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 27192343 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 27250908 . AC ACC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 27252564 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 27266617 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 27288586 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 27298855 . AA AGTAGA 12.7 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 27303852 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 27311595 . C G 4.13 . DP=10;AF1=0.4998;CI95=0.5,0.5;DP4=5,0,0,2;MQ=49;PV4=0.048,0.32,0.0026,1 PL:DP:SP:GT:GQ 32,0,115:7:13:0/1:35 +chr10 27322304 . AACC A 3.25 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,1;MQ=50;PV4=1,0.42,1,1 PL:DP:SP:GT:GQ 38,0,103:4:0:0/1:41 +chr10 27333119 . CC CCAGATGTC 7.35 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 27352908 . A C 7.8 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 27352923 . CTT CTTTT 5.08 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.17 PL:DP:SP:GT:GQ 41,0,70:3:0:0/1:44 +chr10 27355381 . T G 17.8 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 49,6,0:2:0:1/1:49 +chr10 27364301 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 27375559 . C T 38 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,7;MQ=49;PV4=1,0.00056,0,0.28 PL:DP:SP:GT:GQ 68,0,54:9:0:0/1:57 +chr10 27382586 . G C 28 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,2;MQ=42;PV4=0.4,0.13,0.015,1 PL:DP:SP:GT:GQ 58,0,90:6:4:0/1:61 +chr10 27388945 . AC ACTC 12.7 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 27388949 . A ACTAGT 12.7 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 27400861 . G A 3.55 . DP=8;AF1=0.5014;CI95=0.5,0.5;DP4=2,0,2,0;MQ=45;PV4=1,1,1,0.13 PL:DP:SP:GT:GQ 31,0,22:4:0:0/1:24 +chr10 27400862 . T C 54 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=3,0,5,0;MQ=47;PV4=1,0.43,0.24,1 PL:DP:SP:GT:GQ 84,0,54:8:0:0/1:57 +chr10 27400965 . T A 6.2 . DP=12;AF1=0.4999;CI95=0.5,0.5;DP4=4,3,0,3;MQ=48;PV4=0.2,0.35,0.016,0.29 PL:DP:SP:GT:GQ 35,0,129:10:7:0/1:38 +chr10 27401056 . C T 38 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=2,5,0,5;MQ=49;PV4=0.47,0.0046,0.026,0.23 PL:DP:SP:GT:GQ 68,0,218:12:3:0/1:71 +chr10 27405096 . A G 30 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,1,7,0;MQ=50;PV4=0.3,3.3e-16,0.27,1 PL:DP:SP:GT:GQ 60,0,112:10:0:0/1:63 +chr10 27409555 . G A 22 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 54,9,0:3:0:1/1:63 +chr10 27423744 . T C 13.2 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=11,0,5,1;MQ=50;PV4=0.35,1.8e-10,0.33,1 PL:DP:SP:GT:GQ 43,0,222:17:0:0/1:46 +chr10 27456003 . G A 23 . DP=27;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=48 PL:DP:SP:GT:GQ 55,9,0:3:0:1/1:63 +chr10 27482685 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 27493513 . T A 7.8 . DP=18;AF1=0.5001;CI95=0.5,0.5;DP4=0,2,0,4;MQ=50;PV4=1,0.13,0.27,1 PL:DP:SP:GT:GQ 37,0,33:6:0:0/1:35 +chr10 27496624 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 27506854 . C T 63.1 . DP=13;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=48 PL:DP:SP:GT:GQ 96,21,0:7:0:1/1:84 +chr10 27520629 . T G 6.02 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr10 27535600 . T C 4.13 . DP=42;AF1=0.4998;CI95=0.5,0.5;DP4=14,7,5,3;MQ=36;PV4=1,4.8e-05,0.28,0.068 PL:DP:SP:GT:GQ 32,0,252:29:0:0/1:35 +chr10 27536378 . GA GACA 3.25 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,0;MQ=45;PV4=1,1,1,0.17 PL:DP:SP:GT:GQ 38,0,37:3:0:0/1:37 +chr10 27536428 . T C 99 . DP=20;AF1=1;CI95=1,1;DP4=0,0,10,8;MQ=31 PL:DP:SP:GT:GQ 255,54,0:18:0:1/1:99 +chr10 27539507 . C T 4.13 . DP=27;AF1=0.4998;CI95=0.5,0.5;DP4=7,7,3,1;MQ=49;PV4=0.59,1.8e-05,0.017,1 PL:DP:SP:GT:GQ 32,0,255:18:2:0/1:35 +chr10 27540670 . A C 18.1 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=3,1,0,3;MQ=47;PV4=0.14,1,0.21,1 PL:DP:SP:GT:GQ 48,0,73:7:8:0/1:51 +chr10 27546303 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 27572205 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 27577568 . G A 53.3 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=47 PL:DP:SP:GT:GQ 86,15,0:5:0:1/1:75 +chr10 27579600 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 27596223 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 27598418 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 27629880 . T C 29.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=46 PL:DP:SP:GT:GQ 61,6,0:2:0:1/1:49 +chr10 27636782 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 27654688 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 27661241 . A AAGACTTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 27687775 . T C 47.3 . DP=21;AF1=1;CI95=0.5,1;DP4=0,0,3,2;MQ=50 PL:DP:SP:GT:GQ 80,15,0:5:0:1/1:75 +chr10 27687965 . A G 99 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=11,4,5,6;MQ=47;PV4=0.23,1,1.1e-12,1 PL:DP:SP:GT:GQ 255,0,255:26:6:0/1:99 +chr10 27692099 . A G 98.2 . DP=17;AF1=0.5207;CI95=0.5,1;DP4=1,0,12,0;MQ=47;PV4=1,0.0035,0.12,1 PL:DP:SP:GT:GQ 128,0,11:13:0:0/1:14 +chr10 27692205 . G A 14.2 . DP=46;AF1=0.5;CI95=0.5,0.5;DP4=10,14,5,2;MQ=49;PV4=0.22,1.5e-06,3.2e-05,1 PL:DP:SP:GT:GQ 44,0,255:31:7:0/1:47 +chr10 27692279 . A C 43.3 . DP=41;AF1=1;CI95=0.5,1;DP4=0,0,1,4;MQ=49 PL:DP:SP:GT:GQ 76,15,0:5:0:1/1:75 +chr10 27692371 . T G 91 . DP=20;AF1=1;CI95=1,1;DP4=0,0,0,14;MQ=48 PL:DP:SP:GT:GQ 124,42,0:14:0:1/1:99 +chr10 27692403 . C A 68.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=43 PL:DP:SP:GT:GQ 101,12,0:4:0:1/1:72 +chr10 27700887 . G A 7.09 . DP=7;AF1=0.5162;CI95=0.5,0.5;DP4=0,1,0,3;MQ=49;PV4=1,0.14,1,1 PL:DP:SP:GT:GQ 36,0,12:4:0:0/1:15 +chr10 27702256 . GCCCCCC GCCCCCCC 48.9 . INDEL;DP=19;AF1=1;CI95=0.5,1;DP4=0,1,2,7;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 89,13,0:10:0:1/1:65 +chr10 27714898 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 27725648 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 27743051 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 27746663 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 27771950 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 27775448 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 27794202 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 27822619 . TTCT TT 60.5 . INDEL;DP=9;AF1=0.5;CI95=0.5,0.5;DP4=5,0,3,0;MQ=50;PV4=1,0.32,1,0.34 PL:DP:SP:GT:GQ 98,0,144:8:0:0/1:99 +chr10 27857932 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 27895628 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 27899499 . C CCTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 27915819 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 27933701 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 27944016 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 27960297 . g gCTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 27964100 . T C 99 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=3,0,10,0;MQ=45;PV4=1,0.039,0,1 PL:DP:SP:GT:GQ 181,0,82:13:0:0/1:85 +chr10 28023747 . G C 15.1 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,6;MQ=49;PV4=1,0.034,0.27,1 PL:DP:SP:GT:GQ 45,0,126:12:0:0/1:48 +chr10 28024038 . A ATGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 28041936 . t tGG 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 28050697 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 28076426 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 28100895 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 28111738 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 28115604 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 28138431 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 28223886 . A C 40 . DP=26;AF1=0.5006;CI95=0.5,0.5;DP4=3,0,7,0;MQ=48;PV4=1,1,0.0037,1 PL:DP:SP:GT:GQ 70,0,26:10:0:0/1:29 +chr10 28223896 . C T 6.98 . DP=26;AF1=0.4999;CI95=0.5,0.5;DP4=14,0,5,0;MQ=49;PV4=1,0.0079,0.00024,0.41 PL:DP:SP:GT:GQ 36,0,210:19:0:0/1:39 +chr10 28224075 . G A 99 . DP=49;AF1=0.5;CI95=0.5,0.5;DP4=10,17,5,11;MQ=48;PV4=0.75,0.00039,6e-10,1 PL:DP:SP:GT:GQ 215,0,255:43:1:0/1:99 +chr10 28228865 . A G 99 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=14,6,4,7;MQ=47;PV4=0.13,0.00015,1.7e-08,1 PL:DP:SP:GT:GQ 208,0,255:31:9:0/1:99 +chr10 28233120 . A C 39 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=5,0,6,0;MQ=48;PV4=1,0.00034,0.068,1 PL:DP:SP:GT:GQ 69,0,136:11:0:0/1:72 +chr10 28268132 . c cCCTCGGAAGGG 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 28268146 . G C 4.13 . DP=3;AF1=0.5002;CI95=0.5,0.5;DP4=1,1,0,1;MQ=47;PV4=1,1,0,0.17 PL:DP:SP:GT:GQ 32,0,29:3:0:0/1:30 +chr10 28281725 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 28293616 . A G 7.94 . DP=2;AF1=0.5206;CI95=0.5,1;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,11:2:0:0/1:14 +chr10 28296883 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 28335272 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 28345418 . T C 48.1 . DP=50;AF1=1;CI95=0.5,1;DP4=0,0,2,4;MQ=50 PL:DP:SP:GT:GQ 81,18,0:6:0:1/1:90 +chr10 28346033 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 28347457 . T G 24 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=13,0,0,7;MQ=49;PV4=1.3e-05,0.00098,0.0037,0.07 PL:DP:SP:GT:GQ 54,0,197:20:49:0/1:57 +chr10 28349707 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 28372269 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 28409614 . C T,G 44 . DP=26;AF1=1;CI95=0.5,1;DP4=0,1,0,23;MQ=49;PV4=1,0.0037,0.18,1 PL:DP:SP:GT:GQ 148,81,93,72,0,120:24:0:1/1:63 +chr10 28423989 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 28424010 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 28424243 . G C 18.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=37 PL:DP:SP:GT:GQ 50,6,0:2:0:1/1:49 +chr10 28438835 . TCTGCACT TCT 99 . INDEL;DP=9;AF1=0.508;CI95=0.5,0.5;DP4=2,0,7,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 184,0,15:9:0:0/1:18 +chr10 28495301 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 28501685 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 28509185 . T TGTACATC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 28566207 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 28599615 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 28604345 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 28649437 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 28651677 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 28653257 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 28660854 . g gAAGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 28695563 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 28695655 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 28697330 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 28705236 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 28725226 . A G 4.13 . DP=5;AF1=0.4998;CI95=0.5,0.5;DP4=1,2,0,2;MQ=34;PV4=1,9.2e-05,1,0.017 PL:DP:SP:GT:GQ 32,0,61:5:0:0/1:35 +chr10 28739829 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 28742624 . t tTAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 28776787 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 28846505 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 28849741 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 28878641 . A ATAGTAT 5.08 . INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,73:3:0:0/1:44 +chr10 28878643 . T TACGTGCG 7.35 . INDEL;DP=11;AF1=0.5003;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,29:2:0:0/1:32 +chr10 28879477 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 28879779 . T A 10.2 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr10 28904977 . TAACAA TAA 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 28928558 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 28948138 . A ACGGCGTGCAC 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=48;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,40:2:0:0/1:42 +chr10 28953509 . tg tGCCGACAg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 28971009 . C G 4.23 . DP=10;AF1=0.5205;CI95=0.5,0.5;DP4=0,1,0,3;MQ=46;PV4=1,1,0.28,1 PL:DP:SP:GT:GQ 32,0,11:4:0:0/1:14 +chr10 28980658 . cc cCGc 6.56 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 28986296 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 29052613 . GGA GGAACATGA 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 29083956 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 29084099 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 29093841 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 29106417 . C G 7.8 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,35:2:0:0/1:36 +chr10 29160998 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 29191656 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 29191664 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 29199021 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 29199030 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 29234587 . gc gCGGAAATACc 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 29276689 . ttc tTCAGGACCAtc 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 29276857 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 29285078 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 29285093 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 29290434 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 29290895 . T A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 29336403 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 29348351 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 29356371 . aag aAGTCag 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 29430408 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 29450642 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 29452690 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 29454157 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 29483889 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 29507765 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 29519469 . g gGGC 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 29530035 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 29539915 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 29559085 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 29580743 . G A 4.77 . DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,1,0;MQ=48;PV4=1,1,0,0.45 PL:DP:SP:GT:GQ 33,0,58:3:0:0/1:36 +chr10 29599294 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 29607747 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 29645924 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 29710689 . AC ACTC 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,1,0,1;MQ=50;PV4=1,1,1,0.48 PL:DP:SP:GT:GQ 38,0,101:4:0:0/1:41 +chr10 29741672 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 29747417 . C T 8.44 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=50 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr10 29747618 . T A 99 . DP=19;AF1=1;CI95=1,1;DP4=0,0,0,15;MQ=46 PL:DP:SP:GT:GQ 149,45,0:15:0:1/1:99 +chr10 29754609 . T C 7.19 . DP=4;AF1=0.5335;CI95=0.5,1;DP4=0,1,0,2;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,9:3:0:0/1:12 +chr10 29759167 . CGG CG 39.5 . INDEL;DP=15;AF1=0.5;CI95=0.5,0.5;DP4=4,0,5,0;MQ=50;PV4=1,0.00066,1,1 PL:DP:SP:GT:GQ 77,0,87:9:0:0/1:80 +chr10 29759169 . GT G 15.6 . INDEL;DP=16;AF1=0.5;CI95=0.5,0.5;DP4=4,0,8,0;MQ=50;PV4=1,5.6e-05,1,1 PL:DP:SP:GT:GQ 53,0,81:12:0:0/1:56 +chr10 29760209 . C T 81 . DP=14;AF1=1;CI95=1,1;DP4=0,0,0,12;MQ=49 PL:DP:SP:GT:GQ 114,36,0:12:0:1/1:99 +chr10 29773804 . G GGC 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,43:2:0:0/1:43 +chr10 29783908 . A G 36 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,3,0;MQ=47;PV4=0.1,0.32,0.26,1 PL:DP:SP:GT:GQ 66,0,50:5:10:0/1:53 +chr10 29784114 . T C 4.13 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=48;PV4=1,1,0,1 PL:DP:SP:GT:GQ 32,0,32:3:0:0/1:32 +chr10 29791839 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 29822032 . C T 99 . DP=22;AF1=1;CI95=0.5,1;DP4=1,0,11,6;MQ=49;PV4=1,6.3e-06,0.29,0.47 PL:DP:SP:GT:GQ 137,7,0:18:0:1/1:57 +chr10 29839787 . A G 82 . DP=38;AF1=0.5;CI95=0.5,0.5;DP4=11,8,7,5;MQ=49;PV4=1,1.2e-12,0.011,1 PL:DP:SP:GT:GQ 112,0,255:31:0:0/1:99 +chr10 29839864 . A C 99 . DP=42;AF1=1;CI95=1,1;DP4=2,0,19,16;MQ=47;PV4=0.5,1,0.39,1 PL:DP:SP:GT:GQ 255,75,0:37:3:1/1:99 +chr10 29844206 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 29845359 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 29855816 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 29889831 . T TTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 29895387 . t tAGACATTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 29896626 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 29910283 . C CGAGTTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 29919045 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 29921156 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 29925913 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 29940540 . A T 4.77 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 29999426 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 30026739 . g gCGTGT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 30033737 . T G 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 30037434 . G GGTGCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 30046412 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 30050175 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 30054757 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 30072066 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 30118929 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 30124912 . T TCC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 30127347 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 30140239 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 30155679 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 30176262 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 30204435 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 30209756 . A C 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 30210343 . tctc tCTCGAGGCctc 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=48 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 30216046 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 30237399 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 30239732 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 30240255 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 30255183 . C CGGGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 30258081 . C G 4.77 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 30258121 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 30274476 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 30316072 . C G 99 . DP=40;AF1=0.5;CI95=0.5,0.5;DP4=10,7,6,12;MQ=48;PV4=0.18,4.1e-09,1.6e-07,1 PL:DP:SP:GT:GQ 218,0,255:35:7:0/1:99 +chr10 30317685 . A T 6.98 . DP=25;AF1=0.4999;CI95=0.5,0.5;DP4=10,5,0,5;MQ=49;PV4=0.033,0.21,0.024,0.12 PL:DP:SP:GT:GQ 36,0,209:20:15:0/1:39 +chr10 30325997 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 30345850 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 30363733 . t tGGCCCAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 30373017 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 30382564 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 30398459 . T A 9.31 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=44 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 30398499 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 30407091 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 30414155 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 30414643 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 30432174 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 30435257 . tcact tCACTACTGGcact 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 30449482 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 30463645 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 30466340 . TTC TTCATAGAGGCTC 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 30469332 . GAATTTC G 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 30469376 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 30488485 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 30488912 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 30522173 . T TGTTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 30572761 . a aAATG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 30609054 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 30609658 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 30611459 . C A 5.46 . DP=20;AF1=0.4999;CI95=0.5,0.5;DP4=9,2,0,5;MQ=49;PV4=0.0048,0.0032,0.14,1 PL:DP:SP:GT:GQ 34,0,231:16:23:0/1:37 +chr10 30613176 . g gCCCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 30617792 . GA GAAA 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 30629082 . C T 4.61 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr10 30646971 . CT CTTACTATAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 30654785 . G GACGAAGC 7.35 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,42:2:0:0/1:43 +chr10 30657670 . A C 12.3 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,2;MQ=45;PV4=1,0.24,1,1 PL:DP:SP:GT:GQ 42,0,65:4:0:0/1:45 +chr10 30669367 . G A 9.31 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 30669430 . G A 8.44 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr10 30669878 . G C 38.8 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=43 PL:DP:SP:GT:GQ 70,6,0:2:0:1/1:49 +chr10 30669952 . A T 6.55 . DP=2;AF1=0.8277;CI95=0.5,1;DP4=0,1,0,1;MQ=30;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,1:2:0:1/1:5 +chr10 30682317 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 30711201 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 30740530 . A T 19 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=48 PL:DP:SP:GT:GQ 51,9,0:3:0:1/1:63 +chr10 30749895 . G A 50 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,3,0,5;MQ=48;PV4=0.44,0.038,0.014,0.35 PL:DP:SP:GT:GQ 80,0,116:9:0:0/1:83 +chr10 30767146 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 30767773 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 30785897 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 30806124 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 30812680 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 30818863 . AG AGGCGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 30831066 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 30856181 . gtctt gTCTtctt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 30861203 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 30861208 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 30862111 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 30866024 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 30875171 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 30900802 . C T 7.8 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,44:2:0:0/1:39 +chr10 30912354 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 30915994 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 30918668 . G T 55 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,8;MQ=47;PV4=1,0.00091,0.076,1 PL:DP:SP:GT:GQ 85,0,83:11:0:0/1:84 +chr10 30940579 . A T 8.65 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 30944881 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 30966282 . C CATGCTAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 30978288 . C CACAAT 7.46 . INDEL;DP=2;AF1=0.5163;CI95=0.5,1;DP4=0,1,1,0;MQ=48;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,12:2:0:0/1:15 +chr10 30984774 . C A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 30985081 . G A 53 . DP=14;AF1=1;CI95=1,1;DP4=0,0,0,14;MQ=49 PL:DP:SP:GT:GQ 86,42,0:14:0:1/1:99 +chr10 30985990 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 30986253 . G A 6.98 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,44:2:0:0/1:38 +chr10 30993448 . G A 34 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=47 PL:DP:SP:GT:GQ 66,9,0:3:0:1/1:63 +chr10 30998358 . GAT GATAT 5.11 . INDEL;DP=11;AF1=0.505;CI95=0.5,0.5;DP4=0,2,0,1;MQ=49;PV4=1,1,1,0.24 PL:DP:SP:GT:GQ 41,0,17:3:0:0/1:20 +chr10 31005821 . A G 3.01 . DP=7;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,1,0;MQ=45;PV4=1,1,0.33,1 PL:DP:SP:GT:GQ 30,0,46:3:0:0/1:33 +chr10 31005822 . C T 16.3 . DP=7;AF1=0.5263;CI95=0.5,1;DP4=1,0,2,0;MQ=45;PV4=1,1,1,0.29 PL:DP:SP:GT:GQ 46,0,10:3:0:0/1:13 +chr10 31016165 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 31032764 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 31071408 . C T 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 31089738 . ca cAGGGa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 31093803 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 31112732 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 31134557 . T C 5.46 . DP=11;AF1=0.4999;CI95=0.5,0.5;DP4=0,6,0,3;MQ=49;PV4=1,0.00059,0.043,1 PL:DP:SP:GT:GQ 34,0,170:9:0:0/1:37 +chr10 31137100 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 31144153 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 31194971 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 31209090 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 31246634 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 31258118 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 31259590 . TA TAGACGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 31262929 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 31276314 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 31310642 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 31317281 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 31371060 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 31409249 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 31424171 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 31443901 . T TCTAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 31444562 . t tCGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 31448285 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 31480439 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 31499998 . C CCCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 31508956 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 31520483 . ttca t 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 31567677 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 31568601 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 31572145 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 31580319 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 31581189 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 31591487 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 31597995 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 31601921 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 31610346 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 31634971 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 31638243 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 31639872 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 31646567 . TA TATTGTAAAA 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 31681055 . T TTCAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 31706798 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 31707184 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 31803516 . G A 17.7 . DP=10;AF1=0.5939;CI95=0.5,1;DP4=1,0,2,1;MQ=47;PV4=1,1,0.4,1 PL:DP:SP:GT:GQ 47,0,5:4:0:0/1:7 +chr10 31804022 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 31809515 . G T 12.3 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=11,6,0,6;MQ=49;PV4=0.014,0.0022,0.0014,0.33 PL:DP:SP:GT:GQ 42,0,255:23:19:0/1:45 +chr10 31810289 . A C 3.01 . DP=28;AF1=0.4997;CI95=0.5,0.5;DP4=3,14,5,0;MQ=49;PV4=0.0021,0.016,0.0032,1 PL:DP:SP:GT:GQ 30,0,255:22:27:0/1:33 +chr10 31859556 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 31883050 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 31917189 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 31917344 . A C 17.1 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 49,9,0:3:0:1/1:63 +chr10 31917546 . T A 3.57 . DP=7;AF1=0.5048;CI95=0.5,0.5;DP4=0,1,0,2;MQ=49;PV4=1,0.24,0.33,1 PL:DP:SP:GT:GQ 31,0,17:3:0:0/1:20 +chr10 31919729 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 31924186 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 32001764 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 32031141 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 32041079 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 32079212 . a aGAGAGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 32096439 . G T 4.77 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 32103166 . A T 4.14 . DP=19;AF1=0.5014;CI95=0.5,0.5;DP4=1,0,3,0;MQ=47;PV4=1,0.15,0.25,1 PL:DP:SP:GT:GQ 32,0,22:4:0:0/1:25 +chr10 32103171 . G A 8.64 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=3,0,4,0;MQ=47;PV4=1,0.013,0.31,0.065 PL:DP:SP:GT:GQ 38,0,65:7:0:0/1:41 +chr10 32112242 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 32115133 . A G 12 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr10 32141460 . T C 70.1 . DP=19;AF1=1;CI95=1,1;DP4=0,0,6,1;MQ=49 PL:DP:SP:GT:GQ 103,21,0:7:0:1/1:84 +chr10 32157745 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 32160753 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 32180365 . T A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 32197505 . T G 27 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=12,2,0,7;MQ=49;PV4=0.00031,0.00016,0.0043,0.49 PL:DP:SP:GT:GQ 57,0,255:21:35:0/1:60 +chr10 32204519 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 32264492 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 32290211 . t tGCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 32307049 . G A 82.6 . DP=12;AF1=1;CI95=0.5,1;DP4=0,1,0,9;MQ=47;PV4=1,1,0.48,1 PL:DP:SP:GT:GQ 115,11,0:10:0:1/1:66 +chr10 32315698 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 32324951 . C T 8.65 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 32326558 . ATGT ACTTGT 5.11 . INDEL;DP=5;AF1=0.505;CI95=0.5,0.5;DP4=0,1,0,1;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,17:2:0:0/1:20 +chr10 32344736 . CG CGTG 12.7 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 32379291 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 32390152 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 32399317 . C T 57.5 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=46 PL:DP:SP:GT:GQ 90,12,0:4:0:1/1:72 +chr10 32399487 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 32501005 . A T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 32502906 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 32517672 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 32575793 . A G 99 . DP=14;AF1=1;CI95=1,1;DP4=0,0,1,9;MQ=42 PL:DP:SP:GT:GQ 188,30,0:10:0:1/1:99 +chr10 32621379 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 32692473 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 32724393 . aaga aa 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 32726281 . tcaa t 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 32735805 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 32735896 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 32742256 . T G 42.3 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=48 PL:DP:SP:GT:GQ 75,15,0:5:0:1/1:75 +chr10 32745248 . A C 19.1 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,5;MQ=47;PV4=1,9.6e-05,1,1 PL:DP:SP:GT:GQ 49,0,179:13:0:0/1:52 +chr10 32745262 . T C 74 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,5;MQ=46;PV4=1,0.16,0.0054,1 PL:DP:SP:GT:GQ 104,0,158:12:0:0/1:99 +chr10 32749831 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 32751901 . G A 13 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr10 32800536 . G C 13 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr10 32804925 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 32807487 . G C 7.81 . DP=11;AF1=0.5025;CI95=0.5,0.5;DP4=0,2,0,3;MQ=50;PV4=1,1,0.25,1 PL:DP:SP:GT:GQ 37,0,20:5:0:0/1:23 +chr10 32839297 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 32860841 . TT TTCAGAT 5.08 . INDEL;DP=7;AF1=0.5002;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.33 PL:DP:SP:GT:GQ 41,0,31:3:0:0/1:34 +chr10 32890341 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 32952347 . C G 6.79 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr10 32952365 . G C 7.8 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 32983966 . T TAAAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 33015855 . G A 9.31 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 33029519 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 33038105 . t tCAC 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 33085705 . taag tAAGAaag 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 33089383 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 33113632 . C T 5.51 . DP=2;AF1=0.5079;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,15:2:0:0/1:18 +chr10 33115117 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 33119453 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 33123824 . G C 19 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 51,9,0:3:0:1/1:63 +chr10 33143396 . G A 4.81 . DP=13;AF1=0.5079;CI95=0.5,0.5;DP4=1,0,0,2;MQ=49;PV4=0.33,0.44,0.33,1 PL:DP:SP:GT:GQ 33,0,15:3:0:0/1:18 +chr10 33145334 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 33145928 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 33148070 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 33148573 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 33152548 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 33190620 . A G 3.54 . DP=6;AF1=0.5001;CI95=0.5,0.5;DP4=0,1,0,2;MQ=46;PV4=1,0.016,0.14,1 PL:DP:SP:GT:GQ 31,0,30:3:0:0/1:30 +chr10 33200782 . C T 91 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=3,7,11,4;MQ=49;PV4=0.049,1.5e-06,0.058,1 PL:DP:SP:GT:GQ 121,0,249:25:13:0/1:99 +chr10 33209266 . G T 99 . DP=23;AF1=1;CI95=1,1;DP4=0,0,6,12;MQ=48 PL:DP:SP:GT:GQ 232,54,0:18:0:1/1:99 +chr10 33226033 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 33233751 . C G 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 33285892 . g gCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 33292963 . AA AAAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 33303714 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 33318275 . T TACTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 33335752 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 33346584 . T G 3.01 . DP=10;AF1=0.4998;CI95=0.5,0.5;DP4=1,1,2,0;MQ=43;PV4=1,0.12,1,0.3 PL:DP:SP:GT:GQ 30,0,48:4:0:0/1:33 +chr10 33364433 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 33377110 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 33384037 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 33469181 . A G 55 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=9,5,6,1;MQ=48;PV4=0.61,0.00041,0.015,0.39 PL:DP:SP:GT:GQ 85,0,255:21:2:0/1:88 +chr10 33471761 . gcacacacacacacacacacacacacacac gcacacacacacacacacacacacacac 5.08 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=48 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 33475282 . C T 92 . DP=39;AF1=0.5;CI95=0.5,0.5;DP4=8,12,5,9;MQ=49;PV4=1,8.9e-08,0.031,0.45 PL:DP:SP:GT:GQ 122,0,255:34:0:0/1:99 +chr10 33510614 . G A 51.8 . DP=17;AF1=0.6243;CI95=0.5,1;DP4=1,0,7,0;MQ=48;PV4=1,0.17,0.091,1 PL:DP:SP:GT:GQ 81,0,4:8:0:0/1:6 +chr10 33510663 . G A 99 . DP=49;AF1=1;CI95=1,1;DP4=1,1,25,14;MQ=49;PV4=1,1,0.22,1 PL:DP:SP:GT:GQ 242,80,0:41:0:1/1:99 +chr10 33510768 . G A 68 . DP=45;AF1=0.6671;CI95=0.5,1;DP4=0,1,4,3;MQ=49;PV4=1,0.15,0.25,1 PL:DP:SP:GT:GQ 97,0,3:8:0:0/1:5 +chr10 33551333 . aa aACTCa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 33552696 . A G 77.8 . DP=62;AF1=0.6243;CI95=0.5,1;DP4=1,1,16,3;MQ=49;PV4=0.35,0.0032,0.27,0.38 PL:DP:SP:GT:GQ 107,0,4:21:5:0/1:6 +chr10 33566180 . A T 3.01 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=43;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,30:2:0:0/1:30 +chr10 33581447 . AAG AAGGCCAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 33619562 . C T 13 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr10 33679163 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 33680953 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 33688437 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 33704864 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 33745011 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 33772539 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 33779045 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 33793557 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 33793577 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 33811251 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 33816055 . ca cAAGTAGa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 33846170 . T TGTGCAGACTCAG 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 33856097 . CT CTGTAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 33886304 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 33921529 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 33921748 . A ATGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 33940618 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 33953462 . c cACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 33957586 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 33957592 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 33970415 . G GGGAGT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 33985959 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 34022963 . aa aAGAGa 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 34027178 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 34037782 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 34077189 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 34077433 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 34120975 . GA GAGGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 34155205 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 34263230 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 34277429 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 34305605 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 34336428 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 34346099 . T A 3.02 . DP=2;AF1=0.5002;CI95=0.5,0.5;DP4=1,0,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,27:2:0:0/1:28 +chr10 34385456 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 34400305 . C A 3.54 . DP=27;AF1=0.4998;CI95=0.5,0.5;DP4=1,14,5,0;MQ=49;PV4=0.00039,0.0001,0.26,0.17 PL:DP:SP:GT:GQ 31,0,250:20:34:0/1:34 +chr10 34405844 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 34408745 . A C 93 . DP=12;AF1=1;CI95=1,1;DP4=0,0,0,10;MQ=46 PL:DP:SP:GT:GQ 126,30,0:10:0:1/1:99 +chr10 34424917 . C G 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 34467671 . AAA AAATAA 9.94 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 34476224 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 34492722 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 34502059 . ct cTTCGt 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=48 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 34508702 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 34510912 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 34528178 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 34598285 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 34603449 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 34620220 . C T 99 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=1,4,1,7;MQ=47;PV4=1,0.069,0.0033,0.44 PL:DP:SP:GT:GQ 166,0,149:13:0:0/1:99 +chr10 34637858 . A ACT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 34641925 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 34642719 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 34648017 . G A 20.1 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,0,3,0;MQ=46;PV4=1,0.29,0.059,1 PL:DP:SP:GT:GQ 50,0,42:5:0:0/1:44 +chr10 34648022 . G A 11.3 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=47;PV4=1,0.11,0.011,1 PL:DP:SP:GT:GQ 41,0,56:6:0:0/1:44 +chr10 34666840 . CTGGAAATGGAA CTGGAA 7.35 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 34685371 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 34686175 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 34688287 . G A 99 . DP=50;AF1=1;CI95=1,1;DP4=1,1,22,20;MQ=48;PV4=1,0.043,0.043,1 PL:DP:SP:GT:GQ 255,70,0:44:0:1/1:99 +chr10 34795202 . TC TCGCATAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 34832501 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 34860661 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 34881684 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 34888960 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 34892821 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 34892829 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 34948451 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 34964725 . A G 33 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=47;PV4=1,0.023,0,1 PL:DP:SP:GT:GQ 63,0,80:4:0:0/1:66 +chr10 34973192 . G C 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 34975586 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 35020367 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 35032751 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 35033774 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 35075060 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 35135850 . t tGGGAGTCGACCAATC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 35162419 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 35182174 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 35211799 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 35264234 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 35320028 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 35321297 . T TCC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 35321414 . C T 99 . DP=41;AF1=0.5;CI95=0.5,0.5;DP4=5,15,7,10;MQ=48;PV4=0.48,1.1e-05,5.1e-11,0.032 PL:DP:SP:GT:GQ 227,0,255:37:3:0/1:99 +chr10 35324076 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 35390907 . g gTAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 35402077 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 35437239 . ATTT ATTTT 78.5 . INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=3,0,7,0;MQ=50;PV4=1,1,1,0.3 PL:DP:SP:GT:GQ 116,0,46:10:0:0/1:49 +chr10 35447721 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 35481270 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 35489790 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 35490529 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 35496669 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 35497694 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 35500610 . G T 37 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=1,3,1,5;MQ=47;PV4=1,0.34,0.18,0.02 PL:DP:SP:GT:GQ 67,0,65:10:0:0/1:66 +chr10 35515710 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 35524932 . c cTT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 35578862 . TT TTTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 35579757 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 35592328 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 35599488 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 35612605 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 35636553 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 35640926 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 35660812 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 35661341 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 35672794 . T C 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 35679072 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 35682167 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 35715145 . ac aCTc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 35737225 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 35741294 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 35772402 . G A 33.5 . DP=17;AF1=0.9998;CI95=0.5,1;DP4=1,0,1,4;MQ=49;PV4=0.33,1,0.35,1 PL:DP:SP:GT:GQ 63,2,0:6:0:1/1:37 +chr10 35805284 . A C 43.5 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=48 PL:DP:SP:GT:GQ 76,12,0:4:0:1/1:72 +chr10 35805292 . A C 6.79 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=46 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr10 35825055 . T A 25.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=45 PL:DP:SP:GT:GQ 57,6,0:2:0:1/1:49 +chr10 35841699 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 35849787 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 35896573 . C G 7.8 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=11,5,3,2;MQ=49;PV4=1,0.00063,0.0017,1 PL:DP:SP:GT:GQ 37,0,255:21:0:0/1:40 +chr10 35896957 . G A 47 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=2,4,3,2;MQ=49;PV4=0.57,0.12,0.0019,0.26 PL:DP:SP:GT:GQ 77,0,141:11:2:0/1:80 +chr10 35916812 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 35930156 . C A 13.2 . DP=8;AF1=0.5012;CI95=0.5,0.5;DP4=0,1,0,4;MQ=48;PV4=1,0.077,0.33,1 PL:DP:SP:GT:GQ 43,0,23:5:0:0/1:26 +chr10 35932534 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 35939575 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 35949655 . ct cTCATt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 35954103 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 35961919 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 35975741 . G A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 35986246 . AA AAGCTCCCA 5.08 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,69:3:0:0/1:44 +chr10 36001484 . C CG 4.42 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 36004723 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 36048239 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 36048325 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 36061113 . c cTCGGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 36062718 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 36090010 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 36095237 . GAA GAAGAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 36099878 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 36109092 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 36161639 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 36201619 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 36229604 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 36237351 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 36243380 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 36312704 . c cGCTAGTGA 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 36341543 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 36362344 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 36394201 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 36401357 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 36435558 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 36476779 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 36487659 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 36487671 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 36501855 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 36575379 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 36576304 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 36584592 . at aTCGTGCt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 36617356 . a aTAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 36704557 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 36744306 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 36774593 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 36812362 . C T 26.1 . DP=4;AF1=0.508;CI95=0.5,0.5;DP4=0,1,1,1;MQ=45;PV4=1,1,0.33,1 PL:DP:SP:GT:GQ 56,0,15:3:0:0/1:18 +chr10 36844958 . T TATAGGAAAAC 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 36873622 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 36897766 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 36917282 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 36932165 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 36950857 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 36969325 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 37012400 . T C 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 37040999 . tgg tGGCGTGgg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 37071858 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 37076675 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 37109440 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 37111515 . CA CAGTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 37123899 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 37129537 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 37150017 . GA GAGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 37155429 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 37156838 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 37193832 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 37220931 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 37274043 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 37293525 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 37325174 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 37342964 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 37344593 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 37365872 . ag aGAGg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 37383784 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 37399312 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 37400015 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 37400474 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 37414826 . G A 4.83 . DP=8;AF1=0.51;CI95=0.5,0.5;DP4=1,0,2,0;MQ=49;PV4=1,1,0,0.18 PL:DP:SP:GT:GQ 33,0,14:3:0:0/1:17 +chr10 37438777 . G C 13 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr10 37455643 . TAAAAA TAAAAAAA 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 37508381 . G GTGTAA 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,3,1,0;MQ=50;PV4=0.25,1,1,0.22 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr10 37537105 . GA GAAA 3.81 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 37546319 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 37554685 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 37554693 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 37582979 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 37583351 . a aGCTCCTAT 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 37631071 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 37631894 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 37670280 . C A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 37721461 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 37766047 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 37779455 . c cCA 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 37787952 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 37824960 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 37841266 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 37890590 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 37899950 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 37954419 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 37989659 . gg gGTATCATTg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 37992909 . G GTT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 37993621 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 38024750 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 38038459 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 38041731 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 38042313 . T A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 38060527 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 38065888 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 38108101 . T A 7.8 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,2;MQ=48;PV4=0.33,0,0,1 PL:DP:SP:GT:GQ 37,0,41:3:0:0/1:39 +chr10 38109805 . A G 18.1 . DP=4;AF1=0.504;CI95=0.5,0.5;DP4=1,0,3,0;MQ=49;PV4=1,0.24,0.33,1 PL:DP:SP:GT:GQ 48,0,18:4:0:0/1:21 +chr10 38121983 . A G 7.8 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=1,11,5,0;MQ=49;PV4=0.00097,0.069,0.46,1 PL:DP:SP:GT:GQ 37,0,175:17:30:0/1:40 +chr10 38134087 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 38140254 . t tCACTCAGAGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 38167867 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 38167875 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 38172407 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 38195174 . t tCC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 38215980 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 38232051 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 38244388 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 38246545 . A G 4.77 . DP=22;AF1=0.4999;CI95=0.5,0.5;DP4=0,8,0,3;MQ=49;PV4=1,0.0085,0.0012,1 PL:DP:SP:GT:GQ 33,0,189:11:0:0/1:36 +chr10 38306228 . T C 14.1 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=41 PL:DP:SP:GT:GQ 46,9,0:3:0:1/1:63 +chr10 38343260 . G A 78 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=3,0,9,0;MQ=48;PV4=1,0.18,0.046,0.36 PL:DP:SP:GT:GQ 108,0,46:12:0:0/1:49 +chr10 38343351 . C G 9.52 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,0,0,2;MQ=48;PV4=0.33,0.039,0.13,0.088 PL:DP:SP:GT:GQ 39,0,79:4:5:0/1:42 +chr10 38343591 . T C 15.9 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:DP:SP:GT:GQ 47,6,0:2:0:1/1:49 +chr10 38344124 . C G 48 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=5,5,2,7;MQ=39;PV4=0.35,0.45,0.00022,1 PL:DP:SP:GT:GQ 78,0,202:19:5:0/1:81 +chr10 38344700 . C G 10.5 . DP=15;AF1=0.5128;CI95=0.5,0.5;DP4=1,0,1,1;MQ=26;PV4=1,0.33,1,1 PL:DP:SP:GT:GQ 40,0,13:3:0:0/1:16 +chr10 38345186 . C CTCAAT 5.08 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.28 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr10 38369770 . ACTCT ACT 99 . INDEL;DP=11;AF1=0.5016;CI95=0.5,0.5;DP4=0,2,0,8;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 174,0,22:10:0:0/1:25 +chr10 38385574 . T G 8.65 . DP=11;AF1=0.5012;CI95=0.5,0.5;DP4=0,2,0,5;MQ=49;PV4=1,0.013,0.25,1 PL:DP:SP:GT:GQ 38,0,23:7:0:0/1:26 +chr10 38385639 . G C 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 38397536 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 38406536 . A AGTC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 38420624 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 38421929 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 38464723 . T A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 38464886 . T C 23 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=44 PL:DP:SP:GT:GQ 55,9,0:3:0:1/1:63 +chr10 38466941 . A G 5.29 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr10 38475579 . T C 4.77 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 38486447 . G A 6.98 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,2,0;MQ=47;PV4=0.33,0.068,0.23,1 PL:DP:SP:GT:GQ 36,0,41:3:0:0/1:38 +chr10 38498027 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 38537070 . A G 26.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:DP:SP:GT:GQ 58,6,0:2:0:1/1:49 +chr10 38561825 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 38599101 . CTT CTTT 21.3 . INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 60,6,0:2:0:1/1:49 +chr10 38658853 . A C,T 6.4 . DP=7;AF1=0.5335;CI95=0.5,1;DP4=1,0,3,0;MQ=49;PV4=1,1,0.21,1 PL:DP:SP:GT:GQ 39,4,25,13,0,38:4:0:0/1:12 +chr10 38871788 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 38897584 . G A 7.59 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 38909099 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 38909111 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 38934239 . A T 7.81 . DP=5;AF1=0.5025;CI95=0.5,0.5;DP4=1,0,0,3;MQ=48;PV4=0.25,0.031,1,0.18 PL:DP:SP:GT:GQ 37,0,20:4:0:0/1:23 +chr10 38941010 . ta tAAGTGGGa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 38944447 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 38978114 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 38986462 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 38989987 . T G 15.9 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:DP:SP:GT:GQ 47,6,0:2:0:1/1:49 +chr10 39011138 . G A 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 39119414 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 42378441 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 42383985 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 42384737 . C T 3.41 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=16 PL:DP:SP:GT:GQ 32,6,0:2:0:1/1:49 +chr10 42389892 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 42394484 . T C 5.05 . DP=3;AF1=0.5553;CI95=0.5,1;DP4=0,1,1,1;MQ=30;PV4=1,0.0073,1,1 PL:DP:SP:GT:GQ 33,0,7:3:0:0/1:10 +chr10 42396883 . A C 10.5 . DP=18;AF1=0.5101;CI95=0.5,0.5;DP4=0,1,1,2;MQ=35;PV4=1,0.22,0.15,1 PL:DP:SP:GT:GQ 40,0,14:4:0:0/1:17 +chr10 42424342 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 42443761 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 42451586 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 42495754 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 42495991 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 42508370 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 42515435 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 42515581 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 42529727 . t tTCCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 42534887 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 42621092 . attt at 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 42630809 . c cGAGGACTGT 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 42668969 . c cAACATTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 42678350 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 42742932 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 42742936 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 42772221 . A G 14.2 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,2,1,2;MQ=49;PV4=1,0.00097,0.27,0.47 PL:DP:SP:GT:GQ 44,0,76:5:0:0/1:47 +chr10 42780589 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 42881308 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 42900083 . A T 3.57 . DP=3;AF1=0.5062;CI95=0.5,0.5;DP4=0,1,1,1;MQ=47;PV4=1,0.11,1,0.46 PL:DP:SP:GT:GQ 31,0,16:3:0:0/1:19 +chr10 42918346 . a aTT 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 42949730 . G A 3.06 . DP=7;AF1=0.5099;CI95=0.5,0.5;DP4=0,1,0,1;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,14:2:0:0/1:17 +chr10 42961699 . G GTACTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 42976227 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 42987856 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 43011426 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 43062089 . t tGGGGC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 43062370 . C CATT 7.46 . INDEL;DP=7;AF1=0.5163;CI95=0.5,1;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,12:2:0:0/1:15 +chr10 43068222 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 43079863 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 43088919 . T G 99 . DP=25;AF1=1;CI95=1,1;DP4=1,0,7,12;MQ=39;PV4=0.4,0.00023,1,1 PL:DP:SP:GT:GQ 169,43,0:20:0:1/1:99 +chr10 43089965 . G A 40 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=46 PL:DP:SP:GT:GQ 72,9,0:3:0:1/1:63 +chr10 43110771 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 43118982 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 43140452 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 43154505 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 43155500 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 43159907 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 43166888 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 43193149 . TC TCCTGACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 43205315 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 43209943 . G A 99 . DP=9;AF1=1;CI95=0.5,1;DP4=0,1,2,5;MQ=42;PV4=1,1,0.42,0.15 PL:DP:SP:GT:GQ 170,7,0:8:0:1/1:57 +chr10 43209944 . T C 19.1 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=2,4,1,1;MQ=42;PV4=1,1,1,1 PL:DP:SP:GT:GQ 49,0,138:8:0:0/1:52 +chr10 43211236 . C G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 43213996 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 43227793 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 43232105 . A G 3.56 . DP=3;AF1=0.5038;CI95=0.5,0.5;DP4=1,0,2,0;MQ=42;PV4=1,1,0.32,1 PL:DP:SP:GT:GQ 31,0,18:3:0:0/1:21 +chr10 43240676 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 43240686 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 43254205 . T A 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 43270792 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 43280639 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 43281009 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 43285781 . T A 3.01 . DP=12;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,2,0;MQ=49;PV4=0.33,0.05,0.33,0.33 PL:DP:SP:GT:GQ 30,0,34:3:0:0/1:32 +chr10 43285916 . C T 4.13 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,43:2:0:0/1:35 +chr10 43305256 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 43312964 . C G 4.84 . DP=5;AF1=0.5127;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,13:2:0:0/1:16 +chr10 43319197 . G A 18.1 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=16,5,8,3;MQ=32;PV4=1,3.5e-11,0.003,0.32 PL:DP:SP:GT:GQ 48,0,255:32:0:0/1:51 +chr10 43324391 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 43354252 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 43369352 . A G 46.8 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=43 PL:DP:SP:GT:GQ 78,6,0:2:0:1/1:49 +chr10 43372868 . A AAGAGT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 43381270 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 43386651 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 43390965 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 43411070 . t tCGGGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 43452326 . cc cCCTAc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 43460671 . C G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 43465747 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 43478601 . tcacatgc tc 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr10 43489494 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 43500774 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 43533359 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 43541490 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 43560153 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 43581361 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 43586506 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 43590531 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 43602118 . T C 3.01 . DP=3;AF1=0.4997;CI95=0.5,0.5;DP4=0,2,0,1;MQ=47;PV4=1,0.23,0.042,1 PL:DP:SP:GT:GQ 30,0,79:3:0:0/1:33 +chr10 43604370 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 43606687 . A G 99 . DP=56;AF1=0.5;CI95=0.5,0.5;DP4=1,7,16,10;MQ=46;PV4=0.039,0.45,0.0054,0.39 PL:DP:SP:GT:GQ 255,0,74:34:14:0/1:77 +chr10 43609690 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 43617515 . T C 12.3 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=0,14,0,4;MQ=49;PV4=1,0.23,7.3e-05,1 PL:DP:SP:GT:GQ 42,0,167:18:0:0/1:45 +chr10 43658410 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 43671495 . C T 7.19 . DP=7;AF1=0.5335;CI95=0.5,1;DP4=0,1,0,2;MQ=48;PV4=1,1,0.33,1 PL:DP:SP:GT:GQ 36,0,9:3:0:0/1:12 +chr10 43674252 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 43686061 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 43691691 . C T 76 . DP=27;AF1=0.5006;CI95=0.5,0.5;DP4=2,0,3,3;MQ=48;PV4=0.46,0.46,0.094,1 PL:DP:SP:GT:GQ 106,0,26:8:3:0/1:29 +chr10 43694363 . C CA 70.5 . INDEL;DP=25;AF1=1;CI95=1,1;DP4=1,0,15,0;MQ=50;PV4=1,1,0.4,1 PL:DP:SP:GT:GQ 111,31,0:16:0:1/1:99 +chr10 43694394 . A C 21 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=10,0,7,0;MQ=49;PV4=1,0.034,0.28,0.32 PL:DP:SP:GT:GQ 51,0,129:17:0:0/1:54 +chr10 43696086 . C T 7.59 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 43703904 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 43711436 . G T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 43752619 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 43753532 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 43817396 . ag aGCg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 43833850 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 43833857 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 43839782 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 43869097 . C A 38.8 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=43 PL:DP:SP:GT:GQ 70,6,0:2:0:1/1:49 +chr10 43872550 . G GAGAGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 43875938 . c cTT 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 43882160 . G T 4.13 . DP=24;AF1=0.4998;CI95=0.5,0.5;DP4=2,4,4,0;MQ=48;PV4=0.076,0.029,0.3,1 PL:DP:SP:GT:GQ 32,0,163:10:11:0/1:35 +chr10 43883342 . T A 43 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=1,10,0,12;MQ=49;PV4=0.48,3.3e-10,0.005,1 PL:DP:SP:GT:GQ 73,0,249:23:0:0/1:76 +chr10 43904754 . GC GCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 43949736 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 43968020 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 43988321 . t tGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 44019949 . C G 22 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=46 PL:DP:SP:GT:GQ 54,9,0:3:0:1/1:63 +chr10 44019972 . A G 42.1 . DP=7;AF1=0.9966;CI95=0.5,1;DP4=1,0,3,1;MQ=47;PV4=1,1,0.098,0.078 PL:DP:SP:GT:GQ 71,1,0:5:0:1/1:23 +chr10 44052457 . A G 18.1 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=4,16,3,3;MQ=46;PV4=0.29,0.0011,0.0022,1 PL:DP:SP:GT:GQ 48,0,255:26:5:0/1:51 +chr10 44053408 . A G 3.01 . DP=32;AF1=0.4997;CI95=0.5,0.5;DP4=0,18,6,0;MQ=49;PV4=7.4e-06,0.00019,9.9e-05,1 PL:DP:SP:GT:GQ 30,0,226:24:51:0/1:33 +chr10 44054256 . T G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 44069453 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 44080017 . T A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 44080671 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 44089268 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 44099918 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 44100369 . T TCG 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,38:2:0:0/1:40 +chr10 44100941 . A C 4.77 . DP=3;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,2;MQ=49;PV4=1,0.11,0.33,1 PL:DP:SP:GT:GQ 33,0,41:3:0:0/1:35 +chr10 44101391 . G A 34.2 . DP=10;AF1=0.5207;CI95=0.5,1;DP4=0,1,1,3;MQ=49;PV4=1,0.26,0.21,1 PL:DP:SP:GT:GQ 64,0,11:5:0:0/1:14 +chr10 44104137 . G T 17.1 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=5,3,5,0;MQ=48;PV4=0.23,0.083,1,1 PL:DP:SP:GT:GQ 47,0,129:13:6:0/1:50 +chr10 44104568 . A T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 44137058 . g gCT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 44159000 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 44223273 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 44228919 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 44236046 . G C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 44239515 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 44239873 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 44241461 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 44274912 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 44283455 . C CAT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 44295410 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 44304643 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 44376797 . AC ACAGGACAGGTGC 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=48 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 44386300 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 44390258 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 44400139 . A ATAGCTGTCC 7.36 . INDEL;DP=2;AF1=0.501;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,24:2:0:0/1:27 +chr10 44418365 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 44421163 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 44477505 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 44478843 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 44501317 . CCG C 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 44553371 . C CTTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 44561179 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 44580917 . T G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 44599243 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 44601178 . G T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 44611150 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 44611183 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 44618473 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 44666904 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 44676362 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 44692139 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 44692169 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 44692954 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 44703344 . c cGGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 44735750 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 44735806 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 44783392 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 44813794 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 44847630 . t tTCAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 44853859 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 44866267 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 44895656 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 44898983 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 44906595 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 44906626 . T A 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 44934663 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 44955009 . TT TTCTTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 44963983 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 45005486 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 45039380 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 45057369 . ga gACGAa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 45082413 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 45083749 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 45103768 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 45119007 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 45135599 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 45143690 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 45157480 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 45185736 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 45207743 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 45249128 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 45251803 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 45320058 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 45321780 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 45331944 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 45357413 . A T 32.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=44 PL:DP:SP:GT:GQ 64,6,0:2:0:1/1:49 +chr10 45363773 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 45376575 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 45380126 . aa aATTAACCa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 45386177 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 45389704 . T C 43.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:DP:SP:GT:GQ 75,6,0:2:0:1/1:49 +chr10 45391509 . G T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 45401177 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 45401687 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 45423282 . C G 25 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=4,0,3,0;MQ=48;PV4=1,0.064,0.065,1 PL:DP:SP:GT:GQ 55,0,113:7:0:0/1:58 +chr10 45429564 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 45430699 . A G 48 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,4;MQ=47;PV4=1,0.0034,0.026,0.36 PL:DP:SP:GT:GQ 78,0,107:7:0:0/1:81 +chr10 45454570 . T TGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 45476265 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 45490821 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 45496119 . A T 7.5 . DP=23;AF1=0.5939;CI95=0.5,1;DP4=0,1,1,1;MQ=49;PV4=1,1,0.33,1 PL:DP:SP:GT:GQ 36,0,5:3:0:0/1:7 +chr10 45499565 . T C 4.61 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr10 45500458 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 45517126 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 45531309 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 45554315 . T A 4.77 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 45602500 . G A 42.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:DP:SP:GT:GQ 74,6,0:2:0:1/1:49 +chr10 45608933 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 45622885 . C T 33.8 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:DP:SP:GT:GQ 65,6,0:2:0:1/1:49 +chr10 45629683 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 45637078 . C T 94.1 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,3,3;MQ=47 PL:DP:SP:GT:GQ 127,18,0:6:0:1/1:90 +chr10 45637163 . T A 3.01 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,0,2;MQ=49;PV4=1,0.017,0.17,1 PL:DP:SP:GT:GQ 30,0,41:3:0:0/1:33 +chr10 45638239 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 45644160 . G GCA 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,37:2:0:0/1:39 +chr10 45644923 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 45647012 . A T 17.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 49,6,0:2:0:1/1:49 +chr10 45649852 . tt tTGt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 45665031 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 45676536 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 45710533 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 45731301 . C T 38 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=6,0,5,0;MQ=48;PV4=1,0.012,0.049,1 PL:DP:SP:GT:GQ 68,0,133:11:0:0/1:71 +chr10 45737350 . A T 13.6 . DP=5;AF1=0.5554;CI95=0.5,1;DP4=1,0,3,0;MQ=49;PV4=1,1,0.22,0.31 PL:DP:SP:GT:GQ 43,0,7:4:0:0/1:10 +chr10 45772951 . cacaa c 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 45787780 . CA CAGTGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 45792000 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 45792003 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 45799378 . CT CCCTT 12.7 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 45799379 . TGT TGTAGT 4.42 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 45804740 . GCT GCTCACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 45808324 . tg tGAg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 45821687 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 45879266 . A T 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 45879334 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 45882860 . GTTTTT GT 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 45907569 . CG CGTG 7.35 . INDEL;DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,38:2:0:0/1:40 +chr10 45911521 . g gTTCAGTAC 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 45924023 . G A 92.5 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=43 PL:DP:SP:GT:GQ 125,12,0:4:0:1/1:72 +chr10 45924333 . T C 3.54 . DP=5;AF1=0.4998;CI95=0.5,0.5;DP4=0,3,0,2;MQ=49;PV4=1,0.33,0.0034,1 PL:DP:SP:GT:GQ 31,0,67:5:0:0/1:34 +chr10 45935954 . T A 4.13 . DP=27;AF1=0.4998;CI95=0.5,0.5;DP4=3,5,0,4;MQ=46;PV4=0.49,0.17,0.26,1 PL:DP:SP:GT:GQ 32,0,150:12:3:0/1:35 +chr10 45935955 . C G 24 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=9,7,0,5;MQ=47;PV4=0.045,0.12,0.0077,0.5 PL:DP:SP:GT:GQ 54,0,255:21:13:0/1:57 +chr10 45941209 . CTG CTGTG 12.7 . INDEL;DP=9;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 45956643 . T G 21.1 . DP=9;AF1=0.504;CI95=0.5,0.5;DP4=2,0,4,0;MQ=48;PV4=1,1,0.23,0.061 PL:DP:SP:GT:GQ 51,0,18:6:0:0/1:21 +chr10 45959845 . G GT 3.25 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 45961424 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 45964741 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 45966681 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 45980109 . G GGCCATCT 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 45982239 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 45988742 . A ACAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 46015159 . t tGTCCGG 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr10 46057661 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 46076841 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 46081072 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 46083766 . ACCTCC AC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 46090892 . T TGTAGTGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 46098391 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 46103646 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 46113625 . CA CAGGA 5.08 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,82:3:0:0/1:44 +chr10 46113638 . AT ATCCGAGTCGGT 5.08 . INDEL;DP=9;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,38:3:0:0/1:39 +chr10 46113639 . TGA TGAGA 3.8 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 39,0,59:3:0:0/1:42 +chr10 46134054 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 46144015 . T A 4.13 . DP=20;AF1=0.4998;CI95=0.5,0.5;DP4=1,2,0,4;MQ=48;PV4=0.43,0.32,0.027,1 PL:DP:SP:GT:GQ 32,0,55:7:0:0/1:35 +chr10 46202388 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 46202539 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 46217148 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 46221477 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 46261311 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 46315109 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 46914737 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 46948835 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 46956469 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 46969458 . G GTAGACCACGTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 46971576 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 46972162 . ac aCCAGc 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 46974426 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 46976166 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 46993338 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 46998346 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 46998719 . GTCACTCACT GTCACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 46998795 . A G 43 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=7,0,7,0;MQ=49;PV4=1,2.1e-05,0.093,0.22 PL:DP:SP:GT:GQ 73,0,177:14:0:0/1:76 +chr10 46998894 . G A 99 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=0,13,0,17;MQ=48;PV4=1,3.8e-16,3.8e-06,0.3 PL:DP:SP:GT:GQ 132,0,221:30:0:0/1:99 +chr10 46999198 . G T 8.64 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,1;MQ=49;PV4=1,0.0076,0,0.33 PL:DP:SP:GT:GQ 38,0,41:3:0:0/1:39 +chr10 46999377 . G A,T 21 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=45 PL:DP:SP:GT:GQ 59,15,50,6,0,50:4:0:1/1:63 +chr10 46999382 . G A 3.54 . DP=12;AF1=0.4998;CI95=0.5,0.5;DP4=2,1,4,0;MQ=47;PV4=0.43,1,0.021,1 PL:DP:SP:GT:GQ 31,0,57:7:0:0/1:34 +chr10 46999465 . A G 6.2 . DP=23;AF1=0.4999;CI95=0.5,0.5;DP4=0,11,0,4;MQ=49;PV4=1,0.0026,0.00045,1 PL:DP:SP:GT:GQ 35,0,210:15:0:0/1:38 +chr10 46999577 . G T 6.2 . DP=19;AF1=0.4999;CI95=0.5,0.5;DP4=10,1,1,3;MQ=49;PV4=0.033,3.9e-05,0.011,1 PL:DP:SP:GT:GQ 35,0,255:15:15:0/1:38 +chr10 46999591 . CATGAGGGAG CATGAGGGAGATGAGGGAG 99 . INDEL;DP=24;AF1=1;CI95=0.5,1;DP4=1,0,3,5;MQ=50;PV4=0.44,1,1,1 PL:DP:SP:GT:GQ 206,11,0:9:0:1/1:66 +chr10 46999604 . A G 7.8 . DP=38;AF1=0.5;CI95=0.5,0.5;DP4=7,0,3,2;MQ=50;PV4=0.15,0.0019,0.17,0.18 PL:DP:SP:GT:GQ 37,0,164:12:8:0/1:40 +chr10 46999747 . T C 20 . DP=71;AF1=0.5;CI95=0.5,0.5;DP4=17,20,1,9;MQ=49;PV4=0.065,3.2e-05,8.5e-11,1 PL:DP:SP:GT:GQ 50,0,255:47:12:0/1:53 +chr10 47000004 . T C 99 . DP=33;AF1=1;CI95=0.5,1;DP4=1,1,11,8;MQ=47;PV4=1,1,0.13,1 PL:DP:SP:GT:GQ 217,17,0:21:0:1/1:85 +chr10 47005264 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 47014681 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 47038485 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 47056793 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 47087474 . C T 18.6 . DP=78;AF1=0.5718;CI95=0.5,1;DP4=0,1,0,6;MQ=49;PV4=1,0.039,1,1 PL:DP:SP:GT:GQ 48,0,6:7:0:0/1:8 +chr10 47087501 . C T 99 . DP=71;AF1=0.5;CI95=0.5,0.5;DP4=17,17,7,19;MQ=48;PV4=0.11,2.6e-09,5.6e-11,1 PL:DP:SP:GT:GQ 248,0,255:60:10:0/1:99 +chr10 47087608 . T C 99 . DP=44;AF1=0.7303;CI95=0.5,1;DP4=1,1,3,9;MQ=48;PV4=0.51,1,0.096,1 PL:DP:SP:GT:GQ 128,0,2:14:3:0/1:3 +chr10 47087680 . C T 99 . DP=35;AF1=1;CI95=1,1;DP4=0,0,9,18;MQ=45 PL:DP:SP:GT:GQ 255,81,0:27:0:1/1:99 +chr10 47087731 . C T 99 . DP=62;AF1=1;CI95=1,1;DP4=0,0,34,21;MQ=48 PL:DP:SP:GT:GQ 255,166,0:55:0:1/1:99 +chr10 47087830 . G A 35.5 . DP=81;AF1=0.8277;CI95=0.5,1;DP4=0,1,3,3;MQ=50;PV4=1,0.16,0.36,1 PL:DP:SP:GT:GQ 64,0,1:7:0:1/1:5 +chr10 47094419 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 47094855 . acacccc ac 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 47097816 . c cGGTCTTG 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 47119108 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 47124144 . T G 63 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=44 PL:DP:SP:GT:GQ 95,9,0:3:0:1/1:63 +chr10 47127875 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 47130982 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 47133818 . G A 12.3 . DP=39;AF1=0.5;CI95=0.5,0.5;DP4=2,5,2,4;MQ=22;PV4=1,0.004,0.076,1 PL:DP:SP:GT:GQ 42,0,81:13:0:0/1:45 +chr10 47141259 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 47144848 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 47151301 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 47162137 . G C 4.13 . DP=11;AF1=0.4998;CI95=0.5,0.5;DP4=3,4,3,0;MQ=49;PV4=0.2,0.081,0.032,1 PL:DP:SP:GT:GQ 32,0,185:10:7:0/1:35 +chr10 47166232 . G A 27 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=3,1,3,2;MQ=48;PV4=1,0.026,0.099,0.2 PL:DP:SP:GT:GQ 57,0,121:9:0:0/1:60 +chr10 47167115 . G A 15.1 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=3,0,2,1;MQ=48;PV4=1,0.22,1,0.25 PL:DP:SP:GT:GQ 45,0,65:6:0:0/1:48 +chr10 47193197 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 47193206 . C CCT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 47533679 . a aTT 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 47537768 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 47567381 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 47589755 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 47596044 . TG TGAGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 47610244 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 47663830 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 47664230 . GA GACTCCTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 47701205 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 47703041 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 47728608 . T C 47 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=7,4,3,2;MQ=32;PV4=1,1,1,1 PL:DP:SP:GT:GQ 77,0,78:16:0:0/1:77 +chr10 48126719 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 48153406 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 48190102 . C T 3.54 . DP=2;AF1=0.5002;CI95=0.5,0.5;DP4=0,1,0,1;MQ=41;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,28:2:0:0/1:29 +chr10 48255408 . G GCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 48318048 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 48318892 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 48319262 . CT CTCTT 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 48331324 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 48373600 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 48384075 . T C 53 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,6;MQ=48;PV4=1,0.0031,0.00077,1 PL:DP:SP:GT:GQ 83,0,171:13:0:0/1:86 +chr10 48386110 . T C 99 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=0,6,1,13;MQ=48;PV4=1,4.7e-07,0.00011,1 PL:DP:SP:GT:GQ 144,0,145:20:0:0/1:99 +chr10 48386149 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 48388547 . C T 9.52 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=48;PV4=1,1,0.16,1 PL:DP:SP:GT:GQ 39,0,37:4:0:0/1:38 +chr10 48390890 . G A 28 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=1,5,0,5;MQ=49;PV4=1,0.0014,0.0048,0.022 PL:DP:SP:GT:GQ 58,0,167:11:0:0/1:61 +chr10 48391278 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 48408389 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 48414570 . A G 24 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=0,13,0,6;MQ=49;PV4=1,6.6e-06,0,1 PL:DP:SP:GT:GQ 54,0,227:19:0:0/1:57 +chr10 48420419 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 48426091 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 48431294 . AG AGTCTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 48431630 . T TGAC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 48454342 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 48459939 . T TAGTAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 48475954 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 48479559 . C T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 48488556 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 48499042 . TCT TCTGACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 48511458 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 48512018 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 48540053 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 48560126 . TT TTTAT 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 48588530 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 48592883 . A C 8.44 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=48 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr10 48651019 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 48651488 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 49199692 . AAATC A 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 49393736 . T G 4.13 . DP=14;AF1=0.4998;CI95=0.5,0.5;DP4=0,3,0,2;MQ=48;PV4=1,1,0.096,0.37 PL:DP:SP:GT:GQ 32,0,47:5:0:0/1:35 +chr10 49408308 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 49426735 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 49450443 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 49478882 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 49493630 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 49537656 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 49549436 . aact aACTGACCact 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 49552505 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 49568296 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 49613043 . TT TAAGGAT 9.94 . INDEL;DP=8;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 49614419 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 49632396 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 49639932 . ct cTGTGCTCAt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 49646005 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 49649842 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 49654342 . C T 41 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=46 PL:DP:SP:GT:GQ 73,9,0:3:0:1/1:63 +chr10 49654403 . C T 83 . DP=20;AF1=1;CI95=1,1;DP4=0,0,17,0;MQ=49 PL:DP:SP:GT:GQ 116,51,0:17:0:1/1:99 +chr10 49661341 . A G 99 . DP=32;AF1=1;CI95=1,1;DP4=0,0,22,7;MQ=48 PL:DP:SP:GT:GQ 242,87,0:29:0:1/1:99 +chr10 49666348 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 49667713 . G A 17.1 . DP=25;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=47 PL:DP:SP:GT:GQ 49,9,0:3:0:1/1:63 +chr10 49667795 . T C 55.1 . DP=23;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=48 PL:DP:SP:GT:GQ 88,18,0:6:0:1/1:90 +chr10 49687085 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 49687594 . G A 7.59 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 49720206 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 49748830 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 49754491 . A T 13 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=46 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr10 49760281 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 49764654 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 49779004 . C CTTCACTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 49790972 . C T 31 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=48;PV4=1,0.088,0.016,0.33 PL:DP:SP:GT:GQ 61,0,94:6:0:0/1:64 +chr10 49794358 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 49812913 . C A 4.18 . DP=6;AF1=0.51;CI95=0.5,0.5;DP4=0,1,0,2;MQ=39;PV4=1,0.33,0.23,0.33 PL:DP:SP:GT:GQ 32,0,14:3:0:0/1:17 +chr10 49823925 . C T 7.8 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 49828914 . CAC CACGCTTATGGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 49862396 . C G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 49863042 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 49871487 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 49879482 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 49884974 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 49893296 . C CGA 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 49901001 . C CAGTAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 49914313 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 49932611 . G C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 49932799 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 49942260 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 49946785 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 49952907 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 49960023 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 49960282 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 49969353 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 49971979 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 49972309 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 49999675 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50000783 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 50008478 . CA CAATTTTGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 50024289 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50041563 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50085477 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 50095232 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 50104844 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 50121784 . T C 63 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=12,2,10,1;MQ=49;PV4=1,7e-12,0.01,1 PL:DP:SP:GT:GQ 93,0,255:25:0:0/1:96 +chr10 50151003 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50170048 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50171908 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 50189124 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50191543 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 50196258 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 50196963 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50221496 . C A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 50227785 . T C 46.5 . DP=37;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=48 PL:DP:SP:GT:GQ 79,12,0:4:0:1/1:72 +chr10 50227927 . C A 33.1 . DP=7;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=50 PL:DP:SP:GT:GQ 66,21,0:7:0:1/1:84 +chr10 50262104 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50263483 . A AGTCGCGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 50278385 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 50292054 . CTT CTTTCCTCGATTT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 50299331 . G GT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 50311745 . T C 6.2 . DP=18;AF1=0.4999;CI95=0.5,0.5;DP4=10,0,4,0;MQ=49;PV4=1,0.1,0.00019,1 PL:DP:SP:GT:GQ 35,0,142:14:0:0/1:38 +chr10 50313012 . ag aGGg 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 50313372 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 50313567 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50368313 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 50391621 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 50409807 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 50413409 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 50418957 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50440197 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 50461759 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50463994 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 50490333 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50510576 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 50527891 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 50532869 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50557057 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 50559443 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50574798 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 50574807 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 50576422 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 50588349 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 50620540 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 50634525 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50648909 . A AGTCCTC 5.08 . INDEL;DP=4;AF1=0.5002;CI95=0.5,0.5;DP4=2,0,1,0;MQ=34;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,30:3:0:0/1:33 +chr10 50666784 . A ACTTCTGG 4.46 . INDEL;DP=6;AF1=0.508;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 40,0,15:3:0:0/1:18 +chr10 50667544 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50678252 . A T 3.01 . DP=19;AF1=0.4997;CI95=0.5,0.5;DP4=7,0,1,2;MQ=48;PV4=0.067,0.14,1,1 PL:DP:SP:GT:GQ 30,0,126:10:12:0/1:33 +chr10 50678317 . C G 81 . DP=83;AF1=0.5002;CI95=0.5,0.5;DP4=2,1,16,3;MQ=49;PV4=0.47,0.001,0.12,1 PL:DP:SP:GT:GQ 111,0,31:22:3:0/1:34 +chr10 50679040 . T G 17.1 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=6,0,0,4;MQ=49;PV4=0.0048,0.025,0.03,1 PL:DP:SP:GT:GQ 47,0,149:10:23:0/1:50 +chr10 50679878 . T C 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50691360 . T C 65 . DP=20;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=48 PL:DP:SP:GT:GQ 98,24,0:8:0:1/1:96 +chr10 50708114 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50712789 . TCTG T 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 50717628 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 50724016 . C T 5.29 . DP=19;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr10 50741083 . A G 49.3 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=48 PL:DP:SP:GT:GQ 82,15,0:5:0:1/1:75 +chr10 50743577 . C A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 50762600 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 50792515 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 50810610 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50820345 . C A 99 . DP=16;AF1=1;CI95=0.5,1;DP4=0,1,9,4;MQ=48;PV4=0.36,0.15,0.22,1 PL:DP:SP:GT:GQ 152,14,0:14:0:1/1:70 +chr10 50828506 . G A 15.3 . DP=14;AF1=0.5207;CI95=0.5,1;DP4=1,0,4,0;MQ=47;PV4=1,0.16,1,1 PL:DP:SP:GT:GQ 45,0,11:5:0:0/1:14 +chr10 50838972 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 50841099 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 50852223 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 50856120 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 50856652 . G A 54.5 . DP=10;AF1=0.9998;CI95=0.5,1;DP4=0,1,0,5;MQ=47;PV4=1,1,0.21,1 PL:DP:SP:GT:GQ 84,2,0:6:0:1/1:37 +chr10 50856659 . TCTG T 7.42 . INDEL;DP=8;AF1=0.5101;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,14:2:0:0/1:17 +chr10 50857973 . GG GGTTACATTTTTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 50863051 . A C 49 . DP=14;AF1=0.5032;CI95=0.5,0.5;DP4=2,0,6,0;MQ=47;PV4=1,1,0.023,0.23 PL:DP:SP:GT:GQ 79,0,19:8:0:0/1:22 +chr10 50863147 . T C 95 . DP=46;AF1=1;CI95=1,1;DP4=0,0,6,2;MQ=48 PL:DP:SP:GT:GQ 128,24,0:8:0:1/1:96 +chr10 50863565 . C T 26 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,3;MQ=48;PV4=1,0.067,0.3,0.29 PL:DP:SP:GT:GQ 56,0,38:4:0:0/1:41 +chr10 50870751 . A G 18.1 . DP=44;AF1=0.5;CI95=0.5,0.5;DP4=13,2,0,8;MQ=49;PV4=9.2e-05,0.00029,7.3e-05,1 PL:DP:SP:GT:GQ 48,0,252:23:40:0/1:51 +chr10 50890496 . g gATCGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 50901809 . T G 52 . DP=29;AF1=0.9999;CI95=0.5,1;DP4=1,0,0,8;MQ=48;PV4=0.11,0.36,0.17,1 PL:DP:SP:GT:GQ 82,3,0:9:0:1/1:41 +chr10 50902684 . C T 99 . DP=41;AF1=1;CI95=1,1;DP4=0,1,0,30;MQ=46;PV4=1,1,0.088,1 PL:DP:SP:GT:GQ 187,77,0:31:0:1/1:99 +chr10 50909290 . G A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 50916484 . A G 54.1 . DP=68;AF1=1;CI95=1,1;DP4=1,1,19,0;MQ=49;PV4=0.095,0.31,0.19,1 PL:DP:SP:GT:GQ 87,19,0:21:0:1/1:76 +chr10 50916542 . C T 68.8 . DP=57;AF1=1;CI95=0.5,1;DP4=0,1,2,8;MQ=49;PV4=1,0.23,0.31,1 PL:DP:SP:GT:GQ 101,10,0:11:0:1/1:60 +chr10 50921374 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 50936620 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 50944009 . T C 99 . DP=9;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=42 PL:DP:SP:GT:GQ 182,24,0:8:0:1/1:96 +chr10 50947918 . A G 35.1 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=50 PL:DP:SP:GT:GQ 68,18,0:6:0:1/1:90 +chr10 50955061 . CC CCCCCGC 7.46 . INDEL;DP=17;AF1=0.5163;CI95=0.5,1;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,12:2:0:0/1:15 +chr10 50971535 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 50980097 . T A,G 16.9 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=44 PL:DP:SP:GT:GQ 59,17,47,11,0,47:3:0:1/1:49 +chr10 50991686 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 51011952 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 51023268 . TG TGTGG 7.35 . INDEL;DP=3;AF1=0.5008;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,25:2:0:0/1:28 +chr10 51052856 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 51059525 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 51118047 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 51362108 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 51374389 . G C 6.2 . DP=5;AF1=0.4999;CI95=0.5,0.5;DP4=3,0,1,1;MQ=48;PV4=0.4,0.045,0.12,0.39 PL:DP:SP:GT:GQ 35,0,99:5:0:0/1:38 +chr10 51378214 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 51381775 . T G 16.1 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=1,1,3,0;MQ=47;PV4=0.4,0.19,0.11,0.077 PL:DP:SP:GT:GQ 46,0,46:5:0:0/1:46 +chr10 51383614 . G C 6.79 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr10 51384373 . A G 13.2 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 51384388 . GTTAA GTTAACTTAA 4.42 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 51384392 . AAG AAGGCCAG 7.35 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 51388556 . T TAC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 51396109 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 51503381 . T TACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 51511273 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 51515620 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 51532367 . A G 38 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=4,6,1,6;MQ=35;PV4=0.34,8.9e-05,0.0047,0.32 PL:DP:SP:GT:GQ 68,0,219:17:5:0/1:71 +chr10 51549496 . T C 55 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=9,0,10,0;MQ=48;PV4=1,1.2e-07,8.1e-16,1 PL:DP:SP:GT:GQ 85,0,196:19:0:0/1:88 +chr10 51549545 . G T 97 . DP=39;AF1=1;CI95=1,1;DP4=0,0,12,1;MQ=49 PL:DP:SP:GT:GQ 130,39,0:13:0:1/1:99 +chr10 51563835 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 51583018 . CATT C 54.5 . INDEL;DP=15;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,4;MQ=50;PV4=1,0.00031,0.1,0.33 PL:DP:SP:GT:GQ 92,0,189:11:0:0/1:95 +chr10 51610365 . TT TTGT 12.7 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 51610507 . C T 3.54 . DP=5;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.046,0.33,1 PL:DP:SP:GT:GQ 31,0,41:3:0:0/1:34 +chr10 51613231 . T C 7.8 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,1;MQ=48;PV4=1,0.16,0,1 PL:DP:SP:GT:GQ 37,0,66:4:0:0/1:40 +chr10 51620350 . T C 4.13 . DP=6;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,0,2;MQ=48;PV4=0.33,0.05,0.092,1 PL:DP:SP:GT:GQ 32,0,72:4:5:0/1:35 +chr10 51629295 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 51644038 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 51650246 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 51676639 . aa aAATCGTGTa 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr10 51677212 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 51679838 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 51682365 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 51685245 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 51738537 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 51768674 . CAAA CA 15.6 . INDEL;DP=5;AF1=0.6671;CI95=0.5,1;DP4=2,0,1,2;MQ=32;PV4=0.4,0.15,1,1 PL:DP:SP:GT:GQ 52,0,3:5:4:0/1:5 +chr10 51786463 . G A 6.02 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr10 51787710 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 52005242 . C CTCCTTT 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.22 PL:DP:SP:GT:GQ 38,0,107:4:0:0/1:41 +chr10 52007620 . a aGTACAGT 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 52031581 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 52067059 . ATCT AT 4.42 . INDEL;DP=24;AF1=0.5;CI95=0.5,0.5;DP4=4,4,3,0;MQ=50;PV4=0.24,1,1,0.4 PL:DP:SP:GT:GQ 40,0,132:11:6:0/1:43 +chr10 52067074 . T G 26 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=3,1,0,6;MQ=46;PV4=0.033,0.025,0.17,0.46 PL:DP:SP:GT:GQ 56,0,72:10:15:0/1:59 +chr10 52067075 . T G 20 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=4,6,0,5;MQ=47;PV4=0.23,0.19,1,1 PL:DP:SP:GT:GQ 50,0,174:15:6:0/1:53 +chr10 52072803 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 52076422 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 52091852 . a aGAAGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 52121065 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 52142114 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 52146509 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 52157658 . A ACTAGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 52210039 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 52213868 . G C 5.47 . DP=2;AF1=0.5007;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,25:2:0:0/1:27 +chr10 52267179 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 52274303 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 52276837 . A AATT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 52314980 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 52326199 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 52346890 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 52364905 . C CT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 52385653 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 52390407 . G C 11.3 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=4,0,2,0;MQ=48;PV4=1,0.38,0.16,1 PL:DP:SP:GT:GQ 41,0,93:6:0:0/1:44 +chr10 52390836 . A G 65.3 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,1,4;MQ=48 PL:DP:SP:GT:GQ 98,15,0:5:0:1/1:75 +chr10 52400608 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 52411197 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 52419433 . G C,T 3.41 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=48 PL:DP:SP:GT:GQ 42,16,31,10,0,31:3:0:1/1:49 +chr10 52438942 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 52486716 . G GGCC 3.25 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,0.34 PL:DP:SP:GT:GQ 38,0,80:4:0:0/1:41 +chr10 52486792 . G A 36 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=1,1,2,1;MQ=48;PV4=1,0.06,0.068,1 PL:DP:SP:GT:GQ 66,0,73:5:0:0/1:68 +chr10 52502787 . tgtgcgtgcgtgcgtgcgtg tgtgcgtgcgtgcgtg 5.08 . INDEL;DP=18;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,5;MQ=32;PV4=1,1,0.048,1 PL:DP:SP:GT:GQ 41,0,94:11:0:0/1:44 +chr10 52505273 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 52506074 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 52553649 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 52566594 . G C 99 . DP=73;AF1=0.5;CI95=0.5,0.5;DP4=17,25,15,13;MQ=48;PV4=0.33,1.4e-14,5.7e-16,1 PL:DP:SP:GT:GQ 253,0,255:70:5:0/1:99 +chr10 52576068 . G A 97 . DP=39;AF1=1;CI95=1,1;DP4=0,1,0,31;MQ=48;PV4=1,1,0.19,1 PL:DP:SP:GT:GQ 130,79,0:32:0:1/1:99 +chr10 52593210 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 52604764 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 52619758 . T A 3.55 . DP=4;AF1=0.5004;CI95=0.5,0.5;DP4=0,2,0,2;MQ=47;PV4=1,1,0,1 PL:DP:SP:GT:GQ 31,0,26:4:0:0/1:28 +chr10 52620815 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 52638515 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 52646304 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 52646978 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 52650361 . A AAATTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 52669948 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 52674322 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 52684875 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 52691160 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 52775286 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 52805500 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 52861101 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 52887108 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 52891444 . A ATCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 52902274 . g gCTGACC 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 52911674 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 52932813 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 52969600 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 53063556 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 53068694 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 53088211 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 53143038 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 53156863 . t tAAATTAAC 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=48 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 53171754 . C CGG 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 53182209 . CCT CCTAAACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 53206469 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 53206474 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 53227627 . T G 3.98 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 33,6,0:2:0:1/1:49 +chr10 53279059 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 53297488 . a aTCACTCGACTCACTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 53308080 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 53343623 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 53360727 . G T 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 53398853 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 53408380 . C CCGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 53417659 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 53417886 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 53422219 . TG TGATCCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 53438703 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 53457421 . A G 3.01 . DP=21;AF1=0.4997;CI95=0.5,0.5;DP4=3,0,2,0;MQ=49;PV4=1,0.25,0.037,1 PL:DP:SP:GT:GQ 30,0,65:5:0:0/1:33 +chr10 53462957 . aata aATata 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 53492814 . T G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 53593551 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 53620305 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 53629139 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 53662270 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 53666283 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 53699869 . C A 10.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 53719492 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 53739361 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 53753112 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 53758793 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 53764987 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 53767895 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 53770946 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 53816889 . G C 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 53817077 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 53819444 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 53886171 . t tTCCTGAAAC 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=48 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 53895379 . A ACTGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 53903748 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 53910290 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 53910309 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 53965920 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 54021363 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 54032269 . A G 32 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,11;MQ=50;PV4=1,3.6e-16,0.18,1 PL:DP:SP:GT:GQ 62,0,189:19:0:0/1:65 +chr10 54041759 . T TAACAACAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 54060043 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 54069505 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 54148888 . C A 47 . DP=11;AF1=1;CI95=1,1;DP4=0,0,11,0;MQ=38 PL:DP:SP:GT:GQ 80,33,0:11:0:1/1:99 +chr10 54171074 . AC ACCC 6.55 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 43,0,40:2:0:0/1:41 +chr10 54198253 . C T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 54198907 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 54221969 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 54240122 . caa cAAAaa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 54258423 . tct tCTCATACct 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 54262016 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 54278577 . a aGG 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 54330007 . GTTTTT GTTTTTTT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 54351043 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 54359378 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 54380104 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 54380375 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 54389841 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 54435325 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 54458439 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 54463840 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 54474588 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 54480153 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 54512618 . TGCAGTC T 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 54513379 . ta tAGTGa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 54528266 . G C 99 . DP=13;AF1=1;CI95=1,1;DP4=0,0,6,2;MQ=45 PL:DP:SP:GT:GQ 190,24,0:8:0:1/1:96 +chr10 54528298 . G C 96 . DP=9;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=47 PL:DP:SP:GT:GQ 129,24,0:8:0:1/1:96 +chr10 54528353 . C G 69.1 . DP=8;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=48 PL:DP:SP:GT:GQ 102,21,0:7:0:1/1:84 +chr10 54530636 . A G 10.2 . DP=13;AF1=0.6243;CI95=0.5,1;DP4=0,1,0,3;MQ=49;PV4=1,1,0.24,1 PL:DP:SP:GT:GQ 39,0,4:4:0:0/1:6 +chr10 54548708 . T C 9.53 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 54578598 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 54596759 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 54654033 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 54666460 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 54674396 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 54677033 . A AGT 3.25 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 54677683 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 54683843 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 54714977 . tgaa tGAATAgaa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 54826592 . T TCCGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 54866275 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 54869796 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 54880850 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 54885272 . C CGAGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 54885341 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 54885350 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 54920991 . T TCGTAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 54927684 . AGT AGTCTTGT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 54938997 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 54955102 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 54966229 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 55003777 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 55007597 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 55011177 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 55012422 . tga tGAGTTCTGga 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 55020162 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 55062508 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 55104797 . c cTATA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 55122639 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 55150676 . tgtggt tgt 5.8 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 55242189 . ta tACa 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 55303712 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 55343940 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 55389450 . G A 9.31 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 55403276 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 55411325 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 55425031 . aat aATCCTat 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 55436299 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 55447073 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 55481535 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 55506732 . a aGAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 55539078 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 55568880 . C G 6.79 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr10 55582905 . G T 55.1 . DP=44;AF1=1;CI95=0.5,1;DP4=0,0,1,5;MQ=49 PL:DP:SP:GT:GQ 88,18,0:6:0:1/1:90 +chr10 55617054 . T C 35 . DP=21;AF1=0.5016;CI95=0.5,0.5;DP4=0,2,0,6;MQ=49;PV4=1,0.19,0.097,1 PL:DP:SP:GT:GQ 65,0,22:8:0:0/1:25 +chr10 55643054 . CA CAATATGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 55719652 . C T 56 . DP=11;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=50 PL:DP:SP:GT:GQ 89,27,0:9:0:1/1:99 +chr10 55720489 . G GATCTGAAGACTGTA 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 55721679 . T G 13 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr10 55757997 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 55779909 . G C 35 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=7,0,8,0;MQ=49;PV4=1,0.0018,0.047,0.41 PL:DP:SP:GT:GQ 65,0,106:15:0:0/1:68 +chr10 55782196 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 55782991 . C T 42 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,5;MQ=49;PV4=1,7.3e-05,0.023,0.49 PL:DP:SP:GT:GQ 72,0,132:9:0:0/1:75 +chr10 55893518 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 55911601 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 55924765 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 55938318 . A ACAGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 55955444 . T G 99 . DP=25;AF1=1;CI95=1,1;DP4=0,0,17,1;MQ=45 PL:DP:SP:GT:GQ 220,54,0:18:0:1/1:99 +chr10 55980073 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 55990923 . T C 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 56026915 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 56029516 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 56038509 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 56045466 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 56047358 . T TCA 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 56050369 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 56094727 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 56094737 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 56100959 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 56129066 . A G 43 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,5;MQ=48;PV4=1,0.093,0.027,0.23 PL:DP:SP:GT:GQ 73,0,97:9:0:0/1:76 +chr10 56141189 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 56171592 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 56188435 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 56188485 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 56219670 . TT TTACATAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 56244889 . AT ATTGTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 56248862 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 56271612 . AA AATGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 56287569 . T C 80 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=6,1,5,2;MQ=48;PV4=1,0.047,0.00093,0.35 PL:DP:SP:GT:GQ 110,0,153:14:0:0/1:99 +chr10 56287689 . A C 16.1 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 48,9,0:3:0:1/1:63 +chr10 56300684 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 56301556 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 56310053 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 56374517 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 56399546 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 56403219 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 56437620 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 56437633 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 56444029 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 56472510 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 56473789 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 56510130 . TT TTTCAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 56538467 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 56541456 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 56628184 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 56693376 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 56702663 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 56767962 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 56770523 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 56807321 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 56840259 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 56847051 . T TTAG 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 56848425 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 56903981 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 56963272 . g gCC 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr10 56972063 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 56983342 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 56984145 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 57018227 . A G 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 57044209 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 57050326 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 57093281 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 57104106 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 57164947 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 57164954 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 57206158 . G T,C 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,1;MQ=44 PL:DP:SP:GT:GQ 46,18,31,15,0,31:2:0:1/1:41 +chr10 57206560 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 57224742 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 57273633 . A ACCGGTGTGG 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 57283077 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 57283095 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 57345114 . A AGCGAGAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 57427218 . C CAAACGTTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 57427259 . A C 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 57433589 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 57437377 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 57450039 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 57514504 . G T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 57587744 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 57618044 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 57638703 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 57768431 . GCT G 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 57785494 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 57798043 . cagaga caga 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr10 57828560 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 57834675 . AA AAATCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 57836769 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 57884344 . tc tCTGCTAGCGTCc 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 57962283 . T G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 57986270 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 58002958 . t tGTCTAGG 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 58047027 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 58056289 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 58118458 . A C 7.8 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=14,1,0,5;MQ=49;PV4=0.00039,0.006,0.012,1 PL:DP:SP:GT:GQ 37,0,238:20:34:0/1:40 +chr10 58118630 . T C 6.33 . DP=48;AF1=0.5206;CI95=0.5,1;DP4=0,1,2,1;MQ=50;PV4=1,0.021,1,1 PL:DP:SP:GT:GQ 35,0,11:4:0:0/1:14 +chr10 58119976 . G A 49.1 . DP=25;AF1=1;CI95=0.5,1;DP4=0,0,1,5;MQ=49 PL:DP:SP:GT:GQ 82,18,0:6:0:1/1:90 +chr10 58120988 . C A 55 . DP=40;AF1=0.5;CI95=0.5,0.5;DP4=5,23,1,7;MQ=48;PV4=1,4e-06,2.6e-05,1 PL:DP:SP:GT:GQ 85,0,255:36:0:0/1:88 +chr10 58137797 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 58152746 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 58190497 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 58237045 . TT TTCAGTCCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 58289254 . t tGG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 58296043 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 58316378 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 58362159 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 58381243 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 58425293 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 58428951 . g gAGACTGA 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 58458475 . C CGTCCAGGGTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 58511227 . C A 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 58514798 . TCtct TCTCTACtct 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 58606573 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 58606768 . t tTATA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 58667494 . a aTC 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 58682099 . CCTTTA C 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 58684651 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 58688414 . gg gGTGTAACg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 58711866 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 58716548 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 58719064 . C G 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 58757911 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 58775391 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 58784593 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 58784692 . t tGGCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 58805037 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 58873812 . CTACTTGG C 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 58895439 . c cAGGGCCGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 58897984 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 58955004 . CTAACT C 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 58961153 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 58963872 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 58996140 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 59015063 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 59027763 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 59066266 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 59104155 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 59113519 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 59138064 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 59150702 . CT CTGAAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 59176615 . T G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 59222037 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 59225619 . C A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 59241230 . A AGAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 59272498 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 59276578 . ag aGCg 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 59348187 . a aCTTGCTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 59350671 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 59384292 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 59409575 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 59434994 . A AACTCATACC 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr10 59441447 . A T 4.8 . DP=3;AF1=0.5062;CI95=0.5,0.5;DP4=0,1,0,2;MQ=49;PV4=1,0.26,0.23,0.44 PL:DP:SP:GT:GQ 33,0,16:3:0:0/1:19 +chr10 59496132 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 59499258 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 59511633 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 59523527 . G A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 59533993 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 59535213 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 59595571 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 59617927 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 59652840 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 59675969 . G GAGGCCGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 59680886 . g gAGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 59750203 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 59767938 . CA CAGAGTGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 59845324 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 59873087 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 59875795 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 59948078 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 59951636 . G C 7.8 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 59956043 . T TATG 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 59958956 . C A 14.2 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=49;PV4=1,0.021,0.092,1 PL:DP:SP:GT:GQ 44,0,99:6:0:0/1:47 +chr10 59965761 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 59980002 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 59984326 . A C 6.79 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr10 59999546 . G T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 60027213 . C G 17.1 . DP=9;AF1=0.5002;CI95=0.5,0.5;DP4=1,0,0,3;MQ=46;PV4=0.25,0.026,0.1,1 PL:DP:SP:GT:GQ 47,0,32:4:0:0/1:35 +chr10 60036815 . A G 55 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=5,0,7,0;MQ=49;PV4=1,2.6e-05,0.061,1 PL:DP:SP:GT:GQ 85,0,147:12:0:0/1:88 +chr10 60036961 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 60063738 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 60080219 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 60091347 . CCT CCTCT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 60124520 . T G 7.85 . DP=6;AF1=0.508;CI95=0.5,0.5;DP4=1,0,2,0;MQ=44;PV4=1,1,0,1 PL:DP:SP:GT:GQ 37,0,15:3:0:0/1:18 +chr10 60124530 . G C 5.46 . DP=9;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,2,0;MQ=47;PV4=1,0.013,0,1 PL:DP:SP:GT:GQ 34,0,131:6:0:0/1:37 +chr10 60127793 . T G 6.02 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr10 60128470 . G A 7.59 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 60128474 . C G 22 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=3,0,2,1;MQ=49;PV4=1,0.25,0.07,0.069 PL:DP:SP:GT:GQ 52,0,67:6:0:0/1:55 +chr10 60141943 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 60146076 . C T 6.98 . DP=11;AF1=0.5001;CI95=0.5,0.5;DP4=0,1,0,2;MQ=47;PV4=1,0.087,0.3,1 PL:DP:SP:GT:GQ 36,0,31:3:0:0/1:33 +chr10 60146081 . T A,G 5.29 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 45,16,34,10,0,34:3:0:1/1:49 +chr10 60148606 . TT TCTCTTGGT 5.09 . INDEL;DP=9;AF1=0.5025;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,20:3:0:0/1:23 +chr10 60206169 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 60206264 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 60235696 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 60237878 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 60273189 . ACGGCCGGCCGG ACGGCCGG 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 60310156 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 60322917 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 60338911 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 60383162 . ACT ACTTCT 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 60397511 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 60410887 . g gTCAAGTGCGGGCGGA 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=48 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 60423915 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 60425966 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 60515252 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 60521389 . GT GTGTCTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 60542330 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 60559910 . A G 6.79 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr10 60562252 . AC ACTC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 60563062 . G C 22 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,6;MQ=50;PV4=1,4.6e-13,1,0.38 PL:DP:SP:GT:GQ 52,0,102:9:0:0/1:55 +chr10 60612887 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 60642629 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 60650515 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 60673194 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 60692494 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 60718566 . CT CTCAATTTCTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 60729663 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 60767341 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 60797364 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 60818478 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 60837797 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 60839743 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 60840745 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 60848772 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 60848788 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 60873443 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 60883204 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 60897975 . CA CAAA 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.23 PL:DP:SP:GT:GQ 41,0,77:3:0:0/1:44 +chr10 60905529 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 60920725 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 60937151 . AA AAGA 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 60985996 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 60987012 . C A 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 60996453 . G A 69 . DP=24;AF1=1;CI95=1,1;DP4=0,1,0,13;MQ=49;PV4=1,1,0.2,1 PL:DP:SP:GT:GQ 102,25,0:14:0:1/1:99 +chr10 60996454 . T C 44 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,6;MQ=48;PV4=1,0.21,0.0063,0.24 PL:DP:SP:GT:GQ 74,0,111:13:0:0/1:77 +chr10 61005244 . G C 99 . DP=40;AF1=1;CI95=1,1;DP4=0,0,5,22;MQ=48 PL:DP:SP:GT:GQ 230,81,0:27:0:1/1:99 +chr10 61011286 . C T 3.54 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,1,0;MQ=48;PV4=1,0.38,0,1 PL:DP:SP:GT:GQ 31,0,71:3:0:0/1:34 +chr10 61047529 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 61062538 . T C 51 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=9,0,10,0;MQ=49;PV4=1,6.4e-06,0.081,1 PL:DP:SP:GT:GQ 81,0,190:19:0:0/1:84 +chr10 61075720 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 61079827 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 61083689 . CAG CAGTTAG 38.7 . INDEL;DP=28;AF1=0.5263;CI95=0.5,1;DP4=3,0,17,0;MQ=50;PV4=1,0.0041,1,1 PL:DP:SP:GT:GQ 76,0,10:20:0:0/1:13 +chr10 61083690 . AG AGTTGG 99 . INDEL;DP=28;AF1=0.5;CI95=0.5,0.5;DP4=4,0,19,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 235,0,37:23:0:0/1:40 +chr10 61114221 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 61122268 . TG TTAG,TGTTAG 99 . INDEL;DP=11;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=50 PL:DP:SP:GT:GQ 242,47,204,23,0,201:9:0:1/1:96 +chr10 61135422 . aag aAGGag 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 61147791 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 61149934 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 61150029 . a aGGGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 61211853 . C G 6.98 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=41;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,34:2:0:0/1:35 +chr10 61267873 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 61274360 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 61304196 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 61311416 . TAAA TAA 46.5 . INDEL;DP=5;AF1=0.5064;CI95=0.5,0.5;DP4=1,0,1,3;MQ=50;PV4=0.4,0.18,1,1 PL:DP:SP:GT:GQ 84,0,16:5:0:0/1:19 +chr10 61317423 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 61321730 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 61323292 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 61323303 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 61346065 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 61363799 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 61388421 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 61395859 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 61400896 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 61419418 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 61424464 . TGT TGTGAGGCAGGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 61438266 . T TCCCGAAAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 61443790 . CATGAT C 31.5 . INDEL;DP=16;AF1=0.5;CI95=0.5,0.5;DP4=6,0,9,0;MQ=50;PV4=1,4.1e-13,1,1 PL:DP:SP:GT:GQ 69,0,130:15:0:0/1:72 +chr10 61443791 . ATGATGT AT 99 . INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=7,0,5,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 150,0,145:12:0:0/1:99 +chr10 61445020 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 61460488 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 61485881 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 61552774 . C T 65.5 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=43 PL:DP:SP:GT:GQ 98,12,0:4:0:1/1:72 +chr10 61552878 . G A 4.77 . DP=16;AF1=0.5001;CI95=0.5,0.5;DP4=0,1,1,3;MQ=50;PV4=1,0.0038,0.34,0.25 PL:DP:SP:GT:GQ 33,0,31:5:0:0/1:32 +chr10 61554656 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 61559913 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 61563994 . GCATTT G 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 61605201 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 61615695 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 61626698 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 61635204 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 61665886 . C A 7.59 . DP=23;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 61669558 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 61695487 . G T 3.54 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,32:2:0:0/1:31 +chr10 61703035 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 61717196 . tt tTGAt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 61729814 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 61745781 . CT CTAGCTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 61769643 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 61802577 . TCC TCCC 99 . INDEL;DP=14;AF1=1;CI95=1,1;DP4=0,0,0,13;MQ=50 PL:DP:SP:GT:GQ 187,39,0:13:0:1/1:99 +chr10 61803480 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 61808999 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 61815335 . C A,G 58.1 . DP=25;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=49 PL:DP:SP:GT:GQ 91,21,83,0,4,83:8:0:1/1:84 +chr10 61815817 . T G 21 . DP=14;AF1=0.5001;CI95=0.5,0.5;DP4=0,3,0,4;MQ=49;PV4=1,1,0.0035,0.4 PL:DP:SP:GT:GQ 51,0,35:7:0:0/1:38 +chr10 61819049 . T G 99 . DP=23;AF1=1;CI95=1,1;DP4=0,0,17,0;MQ=47 PL:DP:SP:GT:GQ 149,51,0:17:0:1/1:99 +chr10 61833499 . G A 81 . DP=14;AF1=0.5002;CI95=0.5,0.5;DP4=0,2,1,5;MQ=46;PV4=1,0.47,0.095,0.37 PL:DP:SP:GT:GQ 111,0,31:8:0:0/1:34 +chr10 61851446 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 61868628 . T C 5.46 . DP=25;AF1=0.4999;CI95=0.5,0.5;DP4=1,14,5,0;MQ=48;PV4=0.00039,6.8e-05,0.00061,1 PL:DP:SP:GT:GQ 34,0,251:20:34:0/1:37 +chr10 61873922 . T TCAGCC 7.38 . INDEL;DP=3;AF1=0.504;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,18:2:0:0/1:21 +chr10 61881050 . G T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 61932651 . C A 3.54 . DP=15;AF1=0.4998;CI95=0.5,0.5;DP4=7,2,4,0;MQ=50;PV4=1,0.039,0.0093,1 PL:DP:SP:GT:GQ 31,0,211:13:0:0/1:34 +chr10 61932898 . T A 26 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=5,1,0,6;MQ=49;PV4=0.015,0.006,0.0006,1 PL:DP:SP:GT:GQ 56,0,145:12:18:0/1:59 +chr10 61954728 . G GGTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 61981768 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 61983598 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 61984464 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 61987179 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 62023124 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 62075856 . T TCCAGGACCGA 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 62134348 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 62149298 . A T 22 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=1,6,0,6;MQ=48;PV4=1,0.24,0.13,0.43 PL:DP:SP:GT:GQ 52,0,114:13:0:0/1:55 +chr10 62161615 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 62170502 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 62191056 . ca cAAAa 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 62213555 . TGT TGTCGGCGGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 62253950 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 62270896 . A G 58.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=46 PL:DP:SP:GT:GQ 91,12,0:4:0:1/1:72 +chr10 62292865 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 62293910 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 62354614 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 62371485 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 62409299 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 62432727 . G GCAGAAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 62444260 . G C 4.77 . DP=14;AF1=0.4999;CI95=0.5,0.5;DP4=1,1,2,0;MQ=49;PV4=1,0.14,0.019,0.34 PL:DP:SP:GT:GQ 33,0,69:4:0:0/1:36 +chr10 62511198 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 62515649 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 62536309 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 62538789 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 62544394 . a aCACCCTTG 9.94 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=47 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 62547446 . AAGATAGA AAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 62548056 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 62551888 . T C 4 . DP=7;AF1=0.6241;CI95=0.5,1;DP4=0,1,0,2;MQ=49;PV4=1,1,0.33,1 PL:DP:SP:GT:GQ 31,0,4:3:0:0/1:6 +chr10 62552102 . C G 4.77 . DP=8;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,2;MQ=46;PV4=1,0.049,0.29,1 PL:DP:SP:GT:GQ 33,0,60:4:0:0/1:36 +chr10 62552869 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 62553763 . A G 86 . DP=11;AF1=1;CI95=1,1;DP4=0,0,0,10;MQ=48 PL:DP:SP:GT:GQ 119,30,0:10:0:1/1:99 +chr10 62567662 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 62586976 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 62606133 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 62634029 . T TCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 62677221 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 62701621 . AA AACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 62760031 . T TCTCTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 62789037 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 62794334 . gccttcc gcc 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=1,2,1,0;MQ=32;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,50:4:0:0/1:41 +chr10 62818299 . G C 41.8 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=43 PL:DP:SP:GT:GQ 73,6,0:2:0:1/1:49 +chr10 62847818 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 62860480 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 62895703 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 62918436 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 63001707 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 63031689 . a aCC 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 63045200 . T TAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 63061873 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 63104320 . ac aCCCc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 63106386 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 63146297 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 63173823 . AG AGCCCACTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 63182262 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 63221288 . ACC ACCCC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 63235284 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 63246872 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 63284095 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 63306445 . C T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 63309218 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 63348139 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 63379518 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 63403314 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 63415052 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 63426338 . G GACTCTCTGAGA 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 63457041 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 63460739 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 63463451 . G GTACGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 63468360 . A C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 63495819 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 63508178 . T TCTATTTAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 63512959 . t tGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 63513726 . GG GGTACACCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 63518225 . GA GAACTCTCTTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 63520528 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 63528952 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 63549264 . CAAA C 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 63565787 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 63574929 . A T 12 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr10 63591106 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 63593843 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 63614031 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 63621976 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 63650113 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 63652467 . g gTAACACGGAACGGA 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 63658357 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 63675210 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 63692739 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 63701990 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 63703080 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 63713158 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 63730615 . TT TTCTCTTTGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 63806507 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 63821073 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 63824104 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 63835020 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 63835599 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 63848271 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 63889416 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 63890261 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 63907527 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 63958112 . T C 99 . DP=19;AF1=1;CI95=1,1;DP4=0,0,1,14;MQ=48 PL:DP:SP:GT:GQ 175,45,0:15:0:1/1:99 +chr10 63977069 . A T 10.2 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr10 63990895 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 63995983 . C T 94.8 . DP=15;AF1=1;CI95=0.5,1;DP4=0,1,2,9;MQ=48;PV4=1,0.27,0.22,1 PL:DP:SP:GT:GQ 127,10,0:12:0:1/1:60 +chr10 64005711 . C T 81.1 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=46 PL:DP:SP:GT:GQ 114,18,0:6:0:1/1:90 +chr10 64010721 . t tAG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 64034519 . A AAAGGACCTCATTTC 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 64038421 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 64051164 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 64052520 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 64066395 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 64117528 . t tAAGAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 64135376 . T TGCAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 64159333 . G T 47.3 . DP=44;AF1=1;CI95=0.5,1;DP4=0,0,3,2;MQ=50 PL:DP:SP:GT:GQ 80,15,0:5:0:1/1:75 +chr10 64167301 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 64174449 . C T 12 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=47 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr10 64193764 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 64225887 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 64226970 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 64269296 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 64299711 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 64342059 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 64345501 . C CGGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 64375627 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 64377746 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 64414787 . a aAG 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.38 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr10 64415184 . A G 99 . DP=46;AF1=1;CI95=1,1;DP4=0,0,32,11;MQ=48 PL:DP:SP:GT:GQ 248,129,0:43:0:1/1:99 +chr10 64480121 . cca cCAATca 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 64482642 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 64484231 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 64501053 . G A 3.54 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=2,1,1,0;MQ=48;PV4=1,1,0,0.42 PL:DP:SP:GT:GQ 31,0,109:4:0:0/1:34 +chr10 64508091 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 64522357 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 64573771 . C T 99 . DP=26;AF1=1;CI95=1,1;DP4=0,0,0,23;MQ=43 PL:DP:SP:GT:GQ 233,69,0:23:0:1/1:99 +chr10 64604771 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 64624449 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 64637923 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 64638789 . T TCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 64651962 . T TAG 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 64698607 . G GTCACTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 64717309 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 64717776 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 64762268 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 64779563 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 64783988 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 64793933 . a aAGGGTCAACC 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 64797593 . A T 5.29 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=36 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr10 64802638 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 64826075 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 64833216 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 64835044 . GT GTGCGGGGAT 3.81 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 64835759 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 64851043 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 64927247 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 64927823 . C G 64.2 . DP=33;AF1=1;CI95=0.5,1;DP4=1,0,6,1;MQ=49;PV4=1,1,0.38,1 PL:DP:SP:GT:GQ 96,8,0:8:0:1/1:56 +chr10 64931548 . T TACGGTGCCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 64953311 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 64956072 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 64960105 . A AGTAGGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 64967445 . A T 99 . DP=49;AF1=1;CI95=1,1;DP4=0,0,23,17;MQ=49 PL:DP:SP:GT:GQ 246,120,0:40:0:1/1:99 +chr10 64969044 . A G 6.2 . DP=21;AF1=0.4999;CI95=0.5,0.5;DP4=0,3,0,7;MQ=49;PV4=1,0.099,0.11,0.035 PL:DP:SP:GT:GQ 35,0,52:10:0:0/1:38 +chr10 64971149 . c cAAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 64974537 . A T 45 . DP=58;AF1=0.9999;CI95=0.5,1;DP4=1,0,1,7;MQ=49;PV4=0.22,0.16,0.29,1 PL:DP:SP:GT:GQ 75,3,0:9:0:1/1:41 +chr10 64974805 . GTCT GTCTCT 9.94 . INDEL;DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 64974806 . TC TCGGC 12.7 . INDEL;DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 64977091 . C G 20 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,5,1,5;MQ=48;PV4=1,0.0063,0.19,1 PL:DP:SP:GT:GQ 50,0,121:11:0:0/1:53 +chr10 64977098 . A C 4.18 . DP=9;AF1=0.51;CI95=0.5,0.5;DP4=0,1,0,2;MQ=47;PV4=1,0.33,0.33,1 PL:DP:SP:GT:GQ 32,0,14:3:0:0/1:17 +chr10 65064511 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 65091664 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 65119723 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 65157847 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 65164985 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 65177349 . A ATCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 65187315 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 65187461 . C G,T 35 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=44 PL:DP:SP:GT:GQ 75,17,64,8,0,64:4:0:1/1:63 +chr10 65190093 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 65191254 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 65202282 . T TCCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 65261533 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 65268615 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 65271683 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 65278034 . ac aCAGGAAAATc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 65306223 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 65314995 . C CGCTACT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 65394230 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 65394396 . T G 3.01 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,0,1;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,41:2:0:0/1:33 +chr10 65444395 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 65447674 . A G 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 65464957 . T TCTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 65480670 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 65484481 . ACAAGCATT A 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 65487533 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 65503789 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 65590005 . T TTCGCCCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 65635400 . g gGTTCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 65656518 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 65658505 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 65669796 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 65713058 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 65729539 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 65729549 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 65731897 . a aCCCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 65759820 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 65763161 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 65765061 . C T 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 65765096 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 65800840 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 65825190 . C T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 65826980 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 65878025 . A G 15.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=34 PL:DP:SP:GT:GQ 47,6,0:2:0:1/1:49 +chr10 65920042 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 65934710 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 65960343 . CA CAGTGGA 9.15 . INDEL;DP=2;AF1=0.9966;CI95=0.5,1;DP4=1,0,1,0;MQ=35;PV4=1,1,1,1 PL:DP:SP:GT:GQ 45,1,0:2:0:1/1:23 +chr10 65991890 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 65994891 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 65996463 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 65998090 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 65998100 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 66004970 . ca cAAAa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 66014438 . G GCGCGGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 66025205 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 66029334 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 66029353 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 66052641 . T G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 66067759 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 66072643 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 66074579 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 66092599 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 66258165 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 66301546 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 66403693 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 66403980 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 66404486 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 66420848 . ac aCGAGc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 66446804 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 66476178 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 66497599 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 66513270 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 66538896 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 66591190 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 66600609 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 66618363 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 66660428 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 66702852 . A AGGGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 66726629 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 66783222 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 66802731 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 66897772 . attttttt att 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 66904314 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 66929672 . tt tTCt 7.35 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,40:2:0:0/1:42 +chr10 66956997 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 66961970 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 66978656 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 66994350 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 67050070 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 67058950 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 67070954 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 67076213 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 67156490 . TT TTTCTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 67182544 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 67200445 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 67233312 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 67366586 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 67374890 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 67377968 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 67423164 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 67537692 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 67560481 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 67566065 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 67604139 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 67605319 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 67610034 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 67617331 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 67640537 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 67651762 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 67653918 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 67664435 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 67664612 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 67727695 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 67739454 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 67745735 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 67750467 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 67751746 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 67752355 . t tATTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 67859075 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 67935751 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 67989635 . c cGG 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 67999488 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 68067183 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 68075387 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 68084447 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 68084455 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 68096587 . t tTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 68160724 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 68170100 . T TCAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 68172583 . AAAACTTGAAA AAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 68238185 . tg tGCCAAAGg 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 68259363 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 68307459 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 68362003 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 68431757 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 68467846 . C CTGTCCCCGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 68476376 . C T 8.65 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 68495199 . tt tTGCGAAGt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 68499571 . T A 3.02 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 68512804 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 68524803 . GA GACACCCCCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 68532371 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 68539531 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 68615212 . A ACCGTGTCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 68653396 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 68686432 . T C 26 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 58,9,0:3:0:1/1:63 +chr10 68688238 . C G 12.3 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=0,10,0,4;MQ=48;PV4=1,0.1,0.0067,1 PL:DP:SP:GT:GQ 42,0,161:14:0:0/1:45 +chr10 68688243 . A C 11.3 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=46;PV4=1,0.41,0.074,0.47 PL:DP:SP:GT:GQ 41,0,48:6:0:0/1:43 +chr10 68720242 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 68748599 . CT CTACGTGCTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 68791118 . C A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 68811077 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 68852676 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 68857397 . T G 99 . DP=60;AF1=0.5;CI95=0.5,0.5;DP4=15,15,13,12;MQ=49;PV4=1,1.6e-18,5.1e-07,1 PL:DP:SP:GT:GQ 224,0,255:55:0:0/1:99 +chr10 68902063 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 68931758 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 68941282 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 68984539 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 69024876 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 69040036 . a aCATGCCTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 69099870 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 69111677 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 69115122 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 69120787 . aa aAACTa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 69127383 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 69141513 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 69163946 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 69186601 . TG TGAG 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 69216224 . AAATAT A 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 69258113 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 69258118 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 69281495 . C G 4.61 . DP=19;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr10 69299371 . T C 3.54 . DP=21;AF1=0.4998;CI95=0.5,0.5;DP4=9,2,0,4;MQ=49;PV4=0.011,0.036,0.0093,1 PL:DP:SP:GT:GQ 31,0,217:15:20:0/1:34 +chr10 69319559 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 69389493 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 69407167 . T G 4.13 . DP=15;AF1=0.4998;CI95=0.5,0.5;DP4=7,0,3,0;MQ=49;PV4=1,0.063,0.37,1 PL:DP:SP:GT:GQ 32,0,147:10:0:0/1:35 +chr10 69407327 . A G 4.77 . DP=11;AF1=0.4999;CI95=0.5,0.5;DP4=0,4,0,3;MQ=49;PV4=1,0.11,0.48,1 PL:DP:SP:GT:GQ 33,0,91:7:0:0/1:36 +chr10 69467603 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 69510918 . CA CAA 3.25 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 69528983 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 69529858 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 69565429 . CTCTTTCTTTCTTTCT CTCTTTCTTTCT 7.35 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 69575814 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 69583206 . G A 6.23 . DP=5;AF1=0.505;CI95=0.5,0.5;DP4=0,1,0,3;MQ=50;PV4=1,0.029,0.33,1 PL:DP:SP:GT:GQ 35,0,17:4:0:0/1:20 +chr10 69621932 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 69627866 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 69665828 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 69672671 . T C 18.1 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=7,4,0,6;MQ=49;PV4=0.035,0.016,0.094,1 PL:DP:SP:GT:GQ 48,0,227:17:15:0/1:51 +chr10 69773841 . G A 8.76 . DP=24;AF1=0.5163;CI95=0.5,1;DP4=0,1,0,3;MQ=49;PV4=1,0.27,0.33,1 PL:DP:SP:GT:GQ 38,0,12:4:0:0/1:15 +chr10 69778327 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 69808543 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 69831080 . A G 14.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 69837577 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 69855133 . AT ATAGCGGGGCCCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 69863007 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 69881212 . T C 47 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=3,3,7,0;MQ=48;PV4=0.07,0.11,0.0045,1 PL:DP:SP:GT:GQ 77,0,123:13:12:0/1:80 +chr10 69881217 . G A 3.01 . DP=26;AF1=0.4997;CI95=0.5,0.5;DP4=4,1,2,0;MQ=48;PV4=1,0.47,1.5e-05,1 PL:DP:SP:GT:GQ 30,0,95:7:0:0/1:33 +chr10 69910184 . CT CTCCAGTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 69926660 . g gAC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 69934467 . A G 32.1 . DP=10;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=50 PL:DP:SP:GT:GQ 65,21,0:7:0:1/1:84 +chr10 69935235 . T C 39.5 . DP=30;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=47 PL:DP:SP:GT:GQ 72,12,0:4:0:1/1:72 +chr10 69948844 . T C 15.6 . DP=44;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=50 PL:DP:SP:GT:GQ 48,12,0:4:0:1/1:72 +chr10 69955148 . TA TACTGTGGCA 7.46 . INDEL;DP=4;AF1=0.5163;CI95=0.5,1;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,12:2:0:0/1:15 +chr10 69969986 . C T 99 . DP=28;AF1=1;CI95=1,1;DP4=1,0,19,0;MQ=47;PV4=1,1,0.19,1 PL:DP:SP:GT:GQ 155,43,0:20:0:1/1:99 +chr10 70028791 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 70035805 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 70045069 . GCA GCATCA 7.35 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 70045197 . TCCCC TCCC 7.15 . INDEL;DP=14;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr10 70051928 . A G 99 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=13,9,5,8;MQ=48;PV4=0.31,0.013,5.8e-34,1 PL:DP:SP:GT:GQ 251,0,255:35:5:0/1:99 +chr10 70056620 . aa aAGAATGTGTa 12.7 . INDEL;DP=10;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 70075667 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 70093223 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 70108057 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 70108061 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 70123804 . T C 25 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=6,2,7,0;MQ=49;PV4=0.47,0.14,1,1 PL:DP:SP:GT:GQ 55,0,121:15:3:0/1:58 +chr10 70143774 . C T 46 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,3;MQ=47;PV4=1,0.002,0.064,1 PL:DP:SP:GT:GQ 76,0,82:6:0:0/1:78 +chr10 70157322 . a aCAC 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 70252483 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 70259121 . CTTTTTTT CTTT 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 70266400 . A G,C 6.79 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=49 PL:DP:SP:GT:GQ 46,15,36,9,0,36:3:0:1/1:49 +chr10 70304269 . G A 12 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=48 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr10 70332320 . A G 12.3 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=5,1,0,4;MQ=47;PV4=0.048,0.056,1,1 PL:DP:SP:GT:GQ 42,0,134:10:13:0/1:45 +chr10 70332672 . T A 99 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=0,6,2,16;MQ=45;PV4=1,1,1.2e-10,1 PL:DP:SP:GT:GQ 255,0,111:24:0:0/1:99 +chr10 70332862 . C T 99 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=9,7,9,4;MQ=47;PV4=0.7,2.6e-06,1.5e-23,0.18 PL:DP:SP:GT:GQ 255,0,255:29:2:0/1:99 +chr10 70390096 . tgt tGTACAAAgt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 70392137 . A G 34 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=4,0,3,0;MQ=48;PV4=1,1,0.00041,1 PL:DP:SP:GT:GQ 64,0,67:7:0:0/1:65 +chr10 70392361 . G GGTTCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 70394184 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 70404212 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 70405855 . A G 99 . DP=13;AF1=1;CI95=0.5,1;DP4=0,1,7,4;MQ=48;PV4=0.42,0.25,0.19,1 PL:DP:SP:GT:GQ 160,7,0:12:0:1/1:57 +chr10 70406072 . C G 5.46 . DP=14;AF1=0.4999;CI95=0.5,0.5;DP4=1,4,0,3;MQ=48;PV4=1,0.22,0.029,1 PL:DP:SP:GT:GQ 34,0,100:8:0:0/1:37 +chr10 70435652 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 70459361 . TC TCTCC 12.7 . INDEL;DP=10;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 70459362 . CATCAA CTGGATCAA 12.7 . INDEL;DP=10;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 70471271 . c cTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 70485134 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 70502288 . G A 99 . DP=76;AF1=0.5;CI95=0.5,0.5;DP4=15,24,17,15;MQ=48;PV4=0.24,4.1e-24,1.9e-13,0.2 PL:DP:SP:GT:GQ 235,0,255:71:6:0/1:99 +chr10 70513318 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 70515287 . C G 3.01 . DP=20;AF1=0.4997;CI95=0.5,0.5;DP4=2,3,1,3;MQ=48;PV4=1,0.23,0.19,1 PL:DP:SP:GT:GQ 30,0,103:9:0:0/1:33 +chr10 70515291 . A T 3.34 . DP=20;AF1=0.5937;CI95=0.5,1;DP4=0,1,0,2;MQ=48;PV4=1,1,0.33,0.12 PL:DP:SP:GT:GQ 30,0,5:3:0:0/1:7 +chr10 70525591 . G A 4.84 . DP=6;AF1=0.5127;CI95=0.5,0.5;DP4=1,0,3,0;MQ=50;PV4=1,0.18,0.33,0.31 PL:DP:SP:GT:GQ 33,0,13:4:0:0/1:16 +chr10 70526280 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 70532329 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 70546394 . A G 21 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,3,4,0;MQ=49;PV4=0.029,0.016,0.014,1 PL:DP:SP:GT:GQ 51,0,64:7:15:0/1:54 +chr10 70547700 . ATAA ATAAGTAA 7.35 . INDEL;DP=13;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,32:2:0:0/1:35 +chr10 70601417 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 70615452 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 70641614 . C CGCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 70641860 . T C 99 . DP=24;AF1=1;CI95=1,1;DP4=0,0,1,10;MQ=48 PL:DP:SP:GT:GQ 133,33,0:11:0:1/1:99 +chr10 70641952 . T C 3.01 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,34:2:0:0/1:32 +chr10 70646193 . C T 3.54 . DP=40;AF1=0.4998;CI95=0.5,0.5;DP4=3,15,5,0;MQ=49;PV4=0.0017,0.06,1.5e-05,0.36 PL:DP:SP:GT:GQ 31,0,249:23:28:0/1:34 +chr10 70654222 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 70660695 . G GACT 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 70677662 . C CAA 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 70694171 . T A 11.3 . DP=14;AF1=0.5003;CI95=0.5,0.5;DP4=0,3,0,5;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,29:8:0:0/1:32 +chr10 70702908 . A T 4.13 . DP=8;AF1=0.5001;CI95=0.5,0.5;DP4=2,0,2,0;MQ=47;PV4=1,1,0.11,0.053 PL:DP:SP:GT:GQ 32,0,30:4:0:0/1:31 +chr10 70725128 . A G 99 . DP=15;AF1=1;CI95=1,1;DP4=0,1,9,3;MQ=45;PV4=0.31,1,0.039,1 PL:DP:SP:GT:GQ 236,22,0:13:0:1/1:88 +chr10 70735339 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 70742348 . AA AAGA 3.25 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.17 PL:DP:SP:GT:GQ 38,0,80:4:0:0/1:41 +chr10 70748716 . TGG TGCCAGG 7.41 . INDEL;DP=13;AF1=0.508;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,15:2:0:0/1:18 +chr10 70754598 . TC TCGAACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 70783075 . T C 27 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=49 PL:DP:SP:GT:GQ 59,9,0:3:0:1/1:63 +chr10 70791162 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 70861890 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 70866554 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 70886697 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 70917355 . c cTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 70928380 . A C 19.1 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=8,2,0,6;MQ=49;PV4=0.007,0.0015,0.00032,1 PL:DP:SP:GT:GQ 49,0,226:16:22:0/1:52 +chr10 70935110 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 70939153 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 70944600 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 70949240 . TTG TTGTATG 3.25 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.19 PL:DP:SP:GT:GQ 38,0,71:4:0:0/1:41 +chr10 70953065 . A G 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 70962142 . CC CCCGC 5.08 . INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr10 70962148 . TG TGTCTGTACAG 7.46 . INDEL;DP=9;AF1=0.5163;CI95=0.5,1;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,12:2:0:0/1:15 +chr10 70992635 . G A 27 . DP=39;AF1=0.5;CI95=0.5,0.5;DP4=13,13,7,4;MQ=50;PV4=0.5,7.4e-15,1,1 PL:DP:SP:GT:GQ 57,0,255:37:3:0/1:60 +chr10 70992664 . C T 78 . DP=28;AF1=1;CI95=1,1;DP4=1,0,0,23;MQ=49;PV4=0.042,1,0.31,1 PL:DP:SP:GT:GQ 111,56,0:24:0:1/1:99 +chr10 70992716 . G A 66 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=2,9,0,13;MQ=49;PV4=0.2,2.3e-05,0.062,1 PL:DP:SP:GT:GQ 96,0,230:24:7:0/1:99 +chr10 70992912 . A T 99 . DP=55;AF1=1;CI95=1,1;DP4=3,0,13,30;MQ=48;PV4=0.037,1,0.037,1 PL:DP:SP:GT:GQ 239,70,0:46:14:1/1:99 +chr10 70992949 . T A 42 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,13;MQ=48;PV4=1,0.00021,1,1 PL:DP:SP:GT:GQ 72,0,55:16:0:0/1:58 +chr10 71007107 . C A 28 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=12,0,7,0;MQ=49;PV4=1,0.047,0.0056,1 PL:DP:SP:GT:GQ 58,0,137:19:0:0/1:61 +chr10 71010026 . T C 8.44 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr10 71011846 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 71016947 . C G 20.6 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=50 PL:DP:SP:GT:GQ 53,12,0:4:0:1/1:72 +chr10 71018660 . T C 19.1 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=2,1,0,4;MQ=47;PV4=0.14,1,0.028,1 PL:DP:SP:GT:GQ 49,0,50:7:8:0/1:49 +chr10 71026510 . C A 36.5 . DP=54;AF1=0.9998;CI95=0.5,1;DP4=0,1,5,1;MQ=50;PV4=0.29,0.44,0.3,1 PL:DP:SP:GT:GQ 66,2,0:7:0:1/1:37 +chr10 71028763 . AGCGTCACC A 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 71055496 . G A 50 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,6;MQ=49;PV4=1,0.00019,0.067,1 PL:DP:SP:GT:GQ 80,0,121:10:0:0/1:83 +chr10 71060610 . A G 87.2 . DP=13;AF1=1;CI95=0.5,1;DP4=0,1,0,12;MQ=48;PV4=1,0.25,0.2,1 PL:DP:SP:GT:GQ 119,8,0:13:0:1/1:56 +chr10 71093058 . A ACT 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 71100938 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 71113854 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 71120421 . CC CCCTGTAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 71144130 . T G 9.52 . DP=51;AF1=0.5;CI95=0.5,0.5;DP4=21,4,0,8;MQ=49;PV4=3.6e-05,0.013,9.8e-08,1 PL:DP:SP:GT:GQ 39,0,255:33:44:0/1:42 +chr10 71144702 . G A 62 . DP=30;AF1=1;CI95=1,1;DP4=0,0,0,11;MQ=49 PL:DP:SP:GT:GQ 95,33,0:11:0:1/1:99 +chr10 71170707 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 71174655 . tcacacacacacac tcacacacacac 4.11 . INDEL;DP=3;AF1=0.5718;CI95=0.5,1;DP4=1,0,1,0;MQ=36;PV4=1,1,1,1 PL:DP:SP:GT:GQ 39,0,6:2:0:0/1:8 +chr10 71175644 . ct cTGt 5.08 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,51:3:0:0/1:44 +chr10 71175645 . T A 23.3 . DP=6;AF1=0.5336;CI95=0.5,1;DP4=1,0,3,0;MQ=48;PV4=1,1,0.065,0.39 PL:DP:SP:GT:GQ 53,0,9:4:0:0/1:12 +chr10 71223229 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 71224168 . G GCCAGGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 71241910 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 71245297 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 71277313 . TG TGTGCTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 71326723 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 71333046 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 71392557 . C T 55.1 . DP=9;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=49 PL:DP:SP:GT:GQ 88,21,0:7:0:1/1:84 +chr10 71437565 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 71439390 . C CATCTACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 71467691 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 71499514 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 71503988 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 71508036 . ta tAACGACCCa 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 71509209 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 71512287 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 71535239 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 71553737 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 71556945 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 71583923 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 71635215 . C T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 71653389 . T TTTGGGAACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 71661072 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 71663357 . T TCCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 71665792 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 71665820 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 71720872 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 71730541 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 71736762 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 71770443 . A T 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 71830728 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 71851127 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 71859747 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 71862745 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 71868763 . G A 76 . DP=9;AF1=1;CI95=1,1;DP4=0,0,7,1;MQ=49 PL:DP:SP:GT:GQ 109,24,0:8:0:1/1:96 +chr10 71868822 . A C 29 . DP=23;AF1=0.5002;CI95=0.5,0.5;DP4=1,1,4,0;MQ=49;PV4=0.33,0.49,0.16,1 PL:DP:SP:GT:GQ 59,0,30:6:0:0/1:33 +chr10 71876382 . C T 69.1 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=47 PL:DP:SP:GT:GQ 102,18,0:6:0:1/1:90 +chr10 71880755 . TAA TA 14.4 . INDEL;DP=24;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 53,6,0:2:0:1/1:49 +chr10 71880757 . A C 4.11 . DP=26;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 34,9,0:3:0:1/1:63 +chr10 71885543 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 71885928 . T TCAGGATGCTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 71905167 . G A 4.13 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,44:2:0:0/1:35 +chr10 71915062 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 71915152 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 71921591 . G A 99 . DP=27;AF1=1;CI95=1,1;DP4=0,1,12,10;MQ=49;PV4=0.48,1,1,0.083 PL:DP:SP:GT:GQ 190,53,0:23:0:1/1:99 +chr10 71923472 . T C 28.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:DP:SP:GT:GQ 60,6,0:2:0:1/1:49 +chr10 71923763 . G A 4.13 . DP=2;AF1=0.5005;CI95=0.5,0.5;DP4=0,1,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,26:2:0:0/1:28 +chr10 71942617 . AGA AGACACGCGGA 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 71955095 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 71968946 . A T 11.3 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=5,0,3,0;MQ=49;PV4=1,0.17,0.0015,0.069 PL:DP:SP:GT:GQ 41,0,95:8:0:0/1:44 +chr10 71969062 . G A 13.9 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr10 71971484 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 71988215 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 71996558 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 72079307 . tcc tCCTCTCcc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 72083609 . G T 6.98 . DP=10;AF1=0.4999;CI95=0.5,0.5;DP4=5,0,1,2;MQ=49;PV4=0.11,0.041,0.26,0.35 PL:DP:SP:GT:GQ 36,0,131:8:10:0/1:39 +chr10 72115554 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 72119639 . G GTCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 72124336 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 72135000 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 72140057 . C CGA 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 72141001 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 72144225 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 72149318 . T G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 72179689 . C G 6.2 . DP=8;AF1=0.4999;CI95=0.5,0.5;DP4=1,1,3,0;MQ=47;PV4=0.4,0.17,0.077,1 PL:DP:SP:GT:GQ 35,0,58:5:0:0/1:38 +chr10 72184402 . T C 5.46 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,2;MQ=49;PV4=1,0.36,0.21,1 PL:DP:SP:GT:GQ 34,0,44:4:0:0/1:37 +chr10 72184480 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 72192303 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 72195439 . T C 69.1 . DP=11;AF1=1;CI95=0.5,1;DP4=1,0,9,1;MQ=49;PV4=1,0.18,0.34,1 PL:DP:SP:GT:GQ 100,5,0:11:0:1/1:46 +chr10 72237179 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 72243570 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 72243572 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 72257113 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 72258316 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 72264905 . t tCTGCATC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 72291304 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 72297567 . G A 30 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,0,4,0;MQ=47;PV4=1,0.011,0.17,1 PL:DP:SP:GT:GQ 60,0,63:6:0:0/1:61 +chr10 72298631 . T C 3.04 . DP=9;AF1=0.5048;CI95=0.5,0.5;DP4=1,0,3,0;MQ=50;PV4=1,0.045,0.33,1 PL:DP:SP:GT:GQ 30,0,17:4:0:0/1:20 +chr10 72298631 . T TC 19.3 . INDEL;DP=9;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 58,6,0:2:0:1/1:49 +chr10 72307101 . C T 49.3 . DP=29;AF1=1;CI95=0.5,1;DP4=0,0,3,2;MQ=49 PL:DP:SP:GT:GQ 82,15,0:5:0:1/1:75 +chr10 72318807 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 72324143 . A G 98 . DP=24;AF1=1;CI95=1,1;DP4=0,0,5,3;MQ=49 PL:DP:SP:GT:GQ 131,24,0:8:0:1/1:96 +chr10 72325243 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 72326469 . G A 7.89 . DP=3;AF1=0.5128;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,13:2:0:0/1:16 +chr10 72338347 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 72338356 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 72349908 . G C 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 72350882 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 72357713 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 72358577 . G A 54.3 . DP=33;AF1=1;CI95=0.5,1;DP4=0,0,4,1;MQ=49 PL:DP:SP:GT:GQ 87,15,0:5:0:1/1:75 +chr10 72376370 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 72380251 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 72422448 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 72432905 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 72442179 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 72460879 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 72468594 . C T 4.26 . DP=5;AF1=0.5262;CI95=0.5,1;DP4=0,1,0,2;MQ=46;PV4=1,1,0.089,1 PL:DP:SP:GT:GQ 32,0,10:3:0:0/1:13 +chr10 72468601 . GG GGAG 12.5 . INDEL;DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 51,6,0:2:0:1/1:49 +chr10 72473263 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 72496375 . A G 99 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=43 PL:DP:SP:GT:GQ 167,18,0:6:0:1/1:90 +chr10 72500763 . T C 23.8 . DP=29;AF1=0.6243;CI95=0.5,1;DP4=0,1,1,4;MQ=49;PV4=1,0.21,0.29,1 PL:DP:SP:GT:GQ 53,0,4:6:0:0/1:6 +chr10 72500863 . C G 29.6 . DP=33;AF1=0.5939;CI95=0.5,1;DP4=0,1,5,0;MQ=49;PV4=0.17,0.34,0.35,1 PL:DP:SP:GT:GQ 59,0,5:6:0:0/1:7 +chr10 72502783 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 72505097 . C CTA 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.31 PL:DP:SP:GT:GQ 38,0,109:4:0:0/1:41 +chr10 72511223 . TCTCC TCTCCTCC 5.08 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=2,0,0,1;MQ=50;PV4=0.33,1,1,0.2 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr10 72512068 . T A 13 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr10 72512168 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 72516986 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 72517830 . G A 13.2 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=1,4,1,2;MQ=49;PV4=1,0.01,0.044,0.12 PL:DP:SP:GT:GQ 43,0,167:8:0:0/1:46 +chr10 72519067 . G A 3.54 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,44:2:0:0/1:34 +chr10 72520330 . A G 7.8 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=8,5,4,1;MQ=50;PV4=0.61,0.0031,0.022,1 PL:DP:SP:GT:GQ 37,0,253:18:2:0/1:40 +chr10 72520660 . T C 42 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,9;MQ=49;PV4=1,5.5e-05,0.23,1 PL:DP:SP:GT:GQ 72,0,84:12:0:0/1:75 +chr10 72536922 . TCCT TCCTTAGAGACCT 3.25 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=1,2,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,45:4:0:0/1:40 +chr10 72540555 . tt tTTCt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 72544968 . ACTTC ACTTCTTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 72563875 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 72576574 . A G 12.3 . DP=10;AF1=0.5002;CI95=0.5,0.5;DP4=0,1,0,3;MQ=48;PV4=1,0.01,0.092,0.029 PL:DP:SP:GT:GQ 42,0,30:4:0:0/1:33 +chr10 72608849 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 72619205 . C T 99 . DP=45;AF1=1;CI95=0.5,1;DP4=1,1,6,9;MQ=49;PV4=1,0.37,0.14,1 PL:DP:SP:GT:GQ 147,7,0:17:0:1/1:57 +chr10 72633458 . C T 49 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,10;MQ=49;PV4=1,1.5e-08,0.39,1 PL:DP:SP:GT:GQ 79,0,89:13:0:0/1:82 +chr10 72635335 . T C 3.01 . DP=44;AF1=0.4997;CI95=0.5,0.5;DP4=9,10,0,6;MQ=49;PV4=0.057,0.014,0.074,1 PL:DP:SP:GT:GQ 30,0,255:25:12:0/1:33 +chr10 72638054 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 72646409 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 72655715 . GA GAATA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 72663731 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 72676367 . g gCACCCAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 72677631 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 72694842 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 72702134 . TGG T 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 72734308 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 72738289 . T TCAATAGTGGCTCCC 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 72747467 . c cCT 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 72759115 . C G 7.8 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 72797736 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 72816063 . G C 4.78 . DP=2;AF1=0.5024;CI95=0.5,0.5;DP4=0,1,0,1;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,20:2:0:0/1:23 +chr10 72843258 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 72846130 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 72850977 . ac aCATc 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 72855077 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 72864036 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 72885660 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 72906936 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 72916818 . C A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 72950686 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 72961410 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 72976875 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 72998844 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 73023383 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 73028960 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 73036193 . G GACGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 73056288 . GG GGTG 3.25 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=2,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,68:4:0:0/1:41 +chr10 73056289 . G A 11.3 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=2,1,3,0;MQ=48;PV4=1,0.14,1,0.052 PL:DP:SP:GT:GQ 41,0,73:6:0:0/1:44 +chr10 73060184 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 73091885 . t tGGGGAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 73104056 . A G 99 . DP=33;AF1=1;CI95=1,1;DP4=0,0,1,21;MQ=47 PL:DP:SP:GT:GQ 166,66,0:22:0:1/1:99 +chr10 73111258 . G T 26.8 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 58,6,0:2:0:1/1:49 +chr10 73111408 . C T 86 . DP=44;AF1=0.5002;CI95=0.5,0.5;DP4=2,0,5,5;MQ=49;PV4=0.47,0.0091,0.38,1 PL:DP:SP:GT:GQ 116,0,31:12:3:0/1:34 +chr10 73119313 . ACCC ACCCTTTTCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 73121913 . A G 99 . DP=37;AF1=1;CI95=1,1;DP4=1,0,16,16;MQ=42;PV4=1,1,0.055,1 PL:DP:SP:GT:GQ 255,79,0:33:0:1/1:99 +chr10 73121945 . T C 99 . DP=36;AF1=1;CI95=1,1;DP4=0,0,8,10;MQ=45 PL:DP:SP:GT:GQ 217,54,0:18:0:1/1:99 +chr10 73126978 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 73132073 . c cTT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 73173698 . t tCTTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 73188220 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 73197656 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 73222734 . a aGAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 73238547 . G A 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 73240337 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 73257658 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 73265008 . gaga gAGAaga 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 73269314 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 73275956 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 73320123 . G GA 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 73369784 . C T 7.09 . DP=4;AF1=0.5162;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,12:2:0:0/1:15 +chr10 73382844 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 73383757 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 73398982 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 73436040 . G GGTTGCCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 73446700 . A ACCCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 73447589 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 73448723 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 73483308 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 73484902 . A T 4.77 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 73487415 . cacataca caca 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 73491026 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 73510924 . CCAAG C 5.08 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,0.024,1,1 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr10 73515764 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 73520632 . A C 99 . DP=12;AF1=1;CI95=1,1;DP4=0,0,7,2;MQ=48 PL:DP:SP:GT:GQ 132,27,0:9:0:1/1:99 +chr10 73525405 . G GCCCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 73533616 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 73572561 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 73576226 . C CACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 73578503 . G A 6.02 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr10 73578882 . T C 99 . DP=41;AF1=1;CI95=1,1;DP4=0,0,1,34;MQ=48 PL:DP:SP:GT:GQ 175,105,0:35:0:1/1:99 +chr10 73579405 . C T 64 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=0,16,0,7;MQ=47;PV4=1,4.2e-05,1.9e-06,1 PL:DP:SP:GT:GQ 94,0,235:23:0:0/1:97 +chr10 73579501 . AGAGG AG 10.8 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 73579979 . G A 99 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=16,0,16,0;MQ=47;PV4=1,1.3e-05,1.4e-12,0.049 PL:DP:SP:GT:GQ 190,0,233:32:0:0/1:99 +chr10 73623276 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 73625515 . C CAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 73657201 . C CAAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 73665019 . C T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 73700635 . g gAAAATTC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 73711243 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 73721132 . C A 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 73722685 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 73775393 . T TGC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 73806360 . C G 4.77 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 73820817 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 73834604 . at aTAGCt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 73852554 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 73885468 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 73892709 . A G 3.06 . DP=8;AF1=0.5099;CI95=0.5,0.5;DP4=1,0,2,0;MQ=49;PV4=1,0.33,0.33,1 PL:DP:SP:GT:GQ 30,0,14:3:0:0/1:17 +chr10 73895174 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 73895178 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 73898652 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 73933787 . tg tGGCGg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 73935011 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 73956869 . C CTCT 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.31 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr10 73979170 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 73992783 . A G 3.54 . DP=30;AF1=0.4998;CI95=0.5,0.5;DP4=3,5,6,0;MQ=49;PV4=0.031,0.004,0.0045,0.49 PL:DP:SP:GT:GQ 31,0,201:14:15:0/1:34 +chr10 74023805 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 74035041 . T A 93 . DP=19;AF1=1;CI95=1,1;DP4=0,1,0,16;MQ=48;PV4=1,1,0.2,1 PL:DP:SP:GT:GQ 126,27,0:17:0:1/1:99 +chr10 74052490 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 74073683 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 74100693 . C CGTTGGAAA 5.08 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.26 PL:DP:SP:GT:GQ 41,0,80:3:0:0/1:44 +chr10 74116582 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 74174641 . G A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 74185488 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 74185493 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 74193088 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 74222408 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 74226624 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 74262936 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 74262951 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 74285446 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 74323575 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 74381365 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 74383021 . ctctgtcaa c 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 74483371 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 74507559 . ct cTATTt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 74515624 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 74515651 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 74582856 . a aCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 74596052 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 74628428 . T TTTTCCCCAG 7.57 . INDEL;DP=4;AF1=0.5336;CI95=0.5,1;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,9:2:0:0/1:12 +chr10 74669962 . a aCTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 74671611 . C T 99 . DP=61;AF1=1;CI95=1,1;DP4=0,1,16,35;MQ=44;PV4=1,1,2.3e-05,1 PL:DP:SP:GT:GQ 255,138,0:52:0:1/1:99 +chr10 74673910 . G T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 74695287 . T C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 74735286 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 74745816 . c cGCCGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 74761878 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 74813116 . A G 29 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=2,7,5,1;MQ=47;PV4=0.041,0.19,0.044,1 PL:DP:SP:GT:GQ 59,0,157:15:14:0/1:62 +chr10 74813127 . T C 30 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=4,2,1,5;MQ=48;PV4=0.24,0.055,0.036,1 PL:DP:SP:GT:GQ 60,0,130:12:6:0/1:63 +chr10 74827251 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 74834281 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 74834651 . T C 60.3 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=47 PL:DP:SP:GT:GQ 93,15,0:5:0:1/1:75 +chr10 74857712 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 74859512 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 74874262 . T C 46 . DP=12;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=50 PL:DP:SP:GT:GQ 79,24,0:8:0:1/1:96 +chr10 74879505 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 74886384 . CCCT CCCTCTCCT 12.7 . INDEL;DP=11;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 74886392 . GCC GC 99 . INDEL;DP=14;AF1=1;CI95=1,1;DP4=0,0,12,0;MQ=50 PL:DP:SP:GT:GQ 157,36,0:12:0:1/1:99 +chr10 74886598 . C G 99 . DP=18;AF1=1;CI95=1,1;DP4=0,0,1,15;MQ=45 PL:DP:SP:GT:GQ 213,48,0:16:0:1/1:99 +chr10 74892434 . TA TACTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 74894375 . T C 23 . DP=27;AF1=0.5002;CI95=0.5,0.5;DP4=1,1,7,0;MQ=48;PV4=0.22,0.047,0.23,1 PL:DP:SP:GT:GQ 53,0,30:9:0:0/1:33 +chr10 74896664 . T C 45.3 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=49 PL:DP:SP:GT:GQ 78,15,0:5:0:1/1:75 +chr10 74899134 . C G 99 . DP=42;AF1=1;CI95=1,1;DP4=0,0,12,23;MQ=45 PL:DP:SP:GT:GQ 255,105,0:35:0:1/1:99 +chr10 74914256 . T G 99 . DP=10;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=47 PL:DP:SP:GT:GQ 133,27,0:9:0:1/1:99 +chr10 74916002 . T G 37.1 . DP=26;AF1=1;CI95=0.5,1;DP4=1,0,5,0;MQ=49;PV4=1,1,0.23,1 PL:DP:SP:GT:GQ 68,5,0:6:0:1/1:46 +chr10 74916173 . T A 99 . DP=18;AF1=1;CI95=1,1;DP4=0,0,6,5;MQ=46 PL:DP:SP:GT:GQ 194,33,0:11:0:1/1:99 +chr10 74920436 . C T 13.9 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=44 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr10 74923562 . C T 99 . DP=60;AF1=0.7303;CI95=0.5,1;DP4=0,1,9,6;MQ=48;PV4=0.44,7.9e-06,0.26,0.4 PL:DP:SP:GT:GQ 137,0,2:16:0:0/1:3 +chr10 74928151 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 74940456 . T TAGCAGCGGAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 74976149 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 74999252 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 75003600 . C G 9.52 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=3,1,4,0;MQ=48;PV4=1,0.2,0.11,0.27 PL:DP:SP:GT:GQ 39,0,88:8:0:0/1:42 +chr10 75013805 . CAATT C,CATT 9.94 . INDEL;DP=18;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 67,23,47,20,0,44:2:0:1/1:41 +chr10 75013807 . ATTT ATT 3.66 . INDEL;DP=15;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 75013883 . CCTCT CCT 99 . INDEL;DP=8;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=50 PL:DP:SP:GT:GQ 144,21,0:7:0:1/1:84 +chr10 75032032 . gc gCCTAGTCGTAAc 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=47 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 75053202 . GTTT GTT 99 . INDEL;DP=21;AF1=1;CI95=1,1;DP4=0,0,0,18;MQ=50 PL:DP:SP:GT:GQ 157,54,0:18:0:1/1:99 +chr10 75054433 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 75055736 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 75056737 . T C 49.1 . DP=19;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=49 PL:DP:SP:GT:GQ 82,18,0:6:0:1/1:90 +chr10 75056863 . A C 66.1 . DP=60;AF1=1;CI95=0.5,1;DP4=1,0,5,2;MQ=49;PV4=1,1,0.24,1 PL:DP:SP:GT:GQ 97,5,0:8:0:1/1:46 +chr10 75058601 . G C 99 . DP=18;AF1=1;CI95=1,1;DP4=0,0,11,0;MQ=45 PL:DP:SP:GT:GQ 161,33,0:11:0:1/1:99 +chr10 75059331 . A T 12 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr10 75069872 . T C 99 . DP=33;AF1=1;CI95=1,1;DP4=0,0,29,0;MQ=49 PL:DP:SP:GT:GQ 136,87,0:29:0:1/1:99 +chr10 75071272 . g gGGAGAACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 75072199 . G C 99 . DP=31;AF1=1;CI95=1,1;DP4=0,1,20,2;MQ=49;PV4=0.13,0.3,0.28,1 PL:DP:SP:GT:GQ 143,45,0:23:0:1/1:99 +chr10 75072238 . C A 13.2 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=11,7,6,0;MQ=49;PV4=0.13,0.082,4.3e-06,0.36 PL:DP:SP:GT:GQ 43,0,255:24:9:0/1:46 +chr10 75090600 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 75095253 . G A 99 . DP=23;AF1=1;CI95=1,1;DP4=0,1,4,15;MQ=47;PV4=1,1,0.14,1 PL:DP:SP:GT:GQ 243,40,0:20:0:1/1:99 +chr10 75108146 . T G 5.46 . DP=9;AF1=0.5005;CI95=0.5,0.5;DP4=2,0,2,0;MQ=48;PV4=1,1,0.019,1 PL:DP:SP:GT:GQ 34,0,26:4:0:0/1:28 +chr10 75143458 . C T 14.9 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=44 PL:DP:SP:GT:GQ 46,6,0:2:0:1/1:49 +chr10 75147544 . GGAAGAA GGAAGAAGAA 99 . INDEL;DP=47;AF1=1;CI95=1,1;DP4=0,2,1,32;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 255,75,0:35:0:1/1:99 +chr10 75147579 . C T 65 . DP=27;AF1=1;CI95=1,1;DP4=0,0,0,24;MQ=50 PL:DP:SP:GT:GQ 98,72,0:24:0:1/1:99 +chr10 75148116 . A G 99 . DP=26;AF1=1;CI95=0.5,1;DP4=1,1,11,7;MQ=47;PV4=1,1,0.0033,1 PL:DP:SP:GT:GQ 203,15,0:20:0:1/1:75 +chr10 75156152 . T C 13.2 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 75160439 . C T 15.9 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=45 PL:DP:SP:GT:GQ 47,6,0:2:0:1/1:49 +chr10 75160478 . A T 18.8 . DP=28;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=46 PL:DP:SP:GT:GQ 50,6,0:2:0:1/1:49 +chr10 75186107 . C T 18.1 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=4,2,0,4;MQ=48;PV4=0.076,0.3,0.12,1 PL:DP:SP:GT:GQ 48,0,99:10:11:0/1:51 +chr10 75186609 . TGA TGACAGA 7.35 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 75186973 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 75187502 . G A 33 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=1,6,4,1;MQ=48;PV4=0.072,0.031,0.025,1 PL:DP:SP:GT:GQ 63,0,156:12:11:0/1:66 +chr10 75187516 . C G 7.8 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=8,2,0,4;MQ=48;PV4=0.015,0.037,0.056,1 PL:DP:SP:GT:GQ 37,0,212:14:18:0/1:40 +chr10 75208216 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 75211077 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 75220107 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 75227278 . aa aATGa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 75264495 . G GAC 5.08 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.042 PL:DP:SP:GT:GQ 41,0,80:3:0:0/1:44 +chr10 75285741 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 75286691 . C A 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 75289359 . C A 13.9 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr10 75294524 . C T 6.98 . DP=25;AF1=0.4999;CI95=0.5,0.5;DP4=5,5,0,5;MQ=49;PV4=0.1,0.054,0.0086,1 PL:DP:SP:GT:GQ 36,0,214:15:10:0/1:39 +chr10 75294528 . C T 55 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=5,3,0,10;MQ=48;PV4=0.0065,0.021,0.017,1 PL:DP:SP:GT:GQ 85,0,170:18:22:0/1:88 +chr10 75296186 . T G 6.2 . DP=25;AF1=0.4999;CI95=0.5,0.5;DP4=5,7,0,5;MQ=49;PV4=0.24,0.022,1,0.49 PL:DP:SP:GT:GQ 35,0,226:17:6:0/1:38 +chr10 75301505 . T G 15.1 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=0,15,0,6;MQ=49;PV4=1,0.02,2e-06,1 PL:DP:SP:GT:GQ 45,0,190:21:0:0/1:48 +chr10 75302752 . A C 22 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=3,3,5,0;MQ=49;PV4=0.18,0.096,0.06,1 PL:DP:SP:GT:GQ 52,0,134:11:7:0/1:55 +chr10 75302801 . T A 13.2 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=13,1,0,6;MQ=48;PV4=0.00018,0.055,0.17,0.18 PL:DP:SP:GT:GQ 43,0,182:20:37:0/1:46 +chr10 75312755 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 75322851 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 75335857 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 75345230 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 75406021 . GT GTTT 6.68 . INDEL;DP=2;AF1=0.5207;CI95=0.5,1;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 43,0,11:2:0:0/1:14 +chr10 75411282 . C G 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 75427486 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 75476882 . A G 3.55 . DP=11;AF1=0.5006;CI95=0.5,0.5;DP4=2,0,2,0;MQ=49;PV4=1,1,0.21,1 PL:DP:SP:GT:GQ 31,0,25:4:0:0/1:27 +chr10 75479869 . T G,C 5.29 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 48,19,34,13,0,34:3:0:1/1:49 +chr10 75487099 . T C 7.8 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 75491908 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 75506674 . T C 99 . DP=62;AF1=0.5;CI95=0.5,0.5;DP4=11,13,4,17;MQ=48;PV4=0.068,2.2e-10,2.8e-12,1 PL:DP:SP:GT:GQ 224,0,255:45:12:0/1:99 +chr10 75526651 . T C 37 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=1,3,0,6;MQ=48;PV4=0.4,0.17,0.46,0.43 PL:DP:SP:GT:GQ 67,0,76:10:0:0/1:69 +chr10 75527537 . A C 9.31 . DP=17;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 75527708 . A G 99 . DP=48;AF1=0.5;CI95=0.5,0.5;DP4=9,7,4,22;MQ=49;PV4=0.014,2.5e-05,0.0069,0.47 PL:DP:SP:GT:GQ 161,0,255:42:19:0/1:99 +chr10 75554158 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 75555276 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 75564883 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 75567844 . T G 4.77 . DP=41;AF1=0.4999;CI95=0.5,0.5;DP4=8,7,0,6;MQ=49;PV4=0.046,0.0068,0.21,1 PL:DP:SP:GT:GQ 33,0,255:21:13:0/1:36 +chr10 75568649 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 75574848 . G C 12.3 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=3,3,4,0;MQ=50;PV4=0.2,0.14,0.056,1 PL:DP:SP:GT:GQ 42,0,130:10:7:0/1:45 +chr10 75578020 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 75599882 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 75602188 . A T 6.98 . DP=20;AF1=0.4999;CI95=0.5,0.5;DP4=7,0,3,0;MQ=49;PV4=1,0.35,0.028,1 PL:DP:SP:GT:GQ 36,0,101:10:0:0/1:39 +chr10 75605400 . ttc tTCCTTAtc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 75607168 . T C 4.77 . DP=30;AF1=0.4999;CI95=0.5,0.5;DP4=0,11,0,4;MQ=49;PV4=1,0.0021,0.002,1 PL:DP:SP:GT:GQ 33,0,209:15:0:0/1:36 +chr10 75607643 . C CT 59.4 . INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 99,9,0:3:0:1/1:63 +chr10 75607696 . CAA CA 99 . INDEL;DP=15;AF1=1;CI95=1,1;DP4=0,0,14,0;MQ=50 PL:DP:SP:GT:GQ 154,42,0:14:0:1/1:99 +chr10 75608300 . C T 9.52 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=3,4,4,0;MQ=49;PV4=0.19,0.049,0.021,1 PL:DP:SP:GT:GQ 39,0,190:11:7:0/1:42 +chr10 75630262 . AGG AGGGG 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 75643453 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 75655368 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 75663816 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 75672961 . G A 5.31 . DP=13;AF1=0.6242;CI95=0.5,1;DP4=1,0,0,4;MQ=50;PV4=0.2,0.1,1,1 PL:DP:SP:GT:GQ 33,0,4:5:0:0/1:6 +chr10 75673101 . T C 72.1 . DP=39;AF1=0.9966;CI95=0.5,1;DP4=0,1,6,2;MQ=49;PV4=0.33,0.23,0.26,1 PL:DP:SP:GT:GQ 101,1,0:9:0:1/1:23 +chr10 75673879 . C T 99 . DP=42;AF1=1;CI95=1,1;DP4=0,1,12,23;MQ=44;PV4=1,1,0.0073,1 PL:DP:SP:GT:GQ 255,82,0:36:0:1/1:99 +chr10 75674381 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 75682466 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 75731664 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 75746575 . gc gCTCc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 75772415 . A AATT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 75788551 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 75795805 . g gTTCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 75807161 . AA AACTAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 75830739 . A G 26 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=5,2,5,0;MQ=49;PV4=0.47,0.16,0.0048,0.44 PL:DP:SP:GT:GQ 56,0,144:12:3:0/1:59 +chr10 75831517 . AA AACAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 75842152 . G A 99 . DP=12;AF1=1;CI95=1,1;DP4=0,0,10,0;MQ=47 PL:DP:SP:GT:GQ 132,30,0:10:0:1/1:99 +chr10 75843100 . T A 67.1 . DP=19;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=48 PL:DP:SP:GT:GQ 100,21,0:7:0:1/1:84 +chr10 75854057 . G C 4.13 . DP=14;AF1=0.4999;CI95=0.5,0.5;DP4=0,3,0,3;MQ=48;PV4=1,0.12,1,0.035 PL:DP:SP:GT:GQ 32,0,38:6:0:0/1:34 +chr10 75859813 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 75863750 . C T 61 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,7;MQ=48;PV4=1,0.00017,0.015,0.46 PL:DP:SP:GT:GQ 91,0,143:12:0:0/1:94 +chr10 75876591 . A ATGGCGAGGAGG 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 75877926 . A G 3.54 . DP=8;AF1=0.4998;CI95=0.5,0.5;DP4=2,1,0,2;MQ=49;PV4=0.4,0.14,0,0.38 PL:DP:SP:GT:GQ 31,0,99:5:4:0/1:34 +chr10 75888907 . A C 10.4 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=10,0,0,5;MQ=49;PV4=0.00033,0.0088,0.0011,0.02 PL:DP:SP:GT:GQ 40,0,159:15:35:0/1:43 +chr10 75893733 . C A 5.46 . DP=6;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,2,0;MQ=45;PV4=1,0.19,0.32,1 PL:DP:SP:GT:GQ 34,0,27:3:0:0/1:29 +chr10 75898015 . A G 6.2 . DP=27;AF1=0.4999;CI95=0.5,0.5;DP4=9,1,0,4;MQ=49;PV4=0.005,1.8e-05,0.00035,1 PL:DP:SP:GT:GQ 35,0,250:14:23:0/1:38 +chr10 75931540 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 75974039 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 75974545 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 76004751 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 76018185 . A ACTCTCTGT 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 76062343 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 76111330 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 76117086 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 76128388 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 76131890 . G C 15.1 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,1,2,0;MQ=48;PV4=1,0.24,0.16,1 PL:DP:SP:GT:GQ 45,0,68:4:0:0/1:48 +chr10 76154971 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 76158177 . C T 21.3 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=50 PL:DP:SP:GT:GQ 54,15,0:5:0:1/1:75 +chr10 76238343 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 76257614 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 76299939 . A ACTAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 76306233 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 76318422 . t tACTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 76336344 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 76345340 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 76345781 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 76353358 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 76382860 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 76415666 . G T 6.02 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr10 76419641 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 76435908 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 76456897 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 76456916 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 76468002 . T C,G 24 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=48 PL:DP:SP:GT:GQ 63,16,53,7,0,53:4:0:1/1:63 +chr10 76484050 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 76484076 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 76504082 . C T 13.9 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=46 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr10 76509687 . C A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 76522502 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 76527172 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 76535412 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 76543877 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 76549039 . ac aCGACACc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 76561552 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 76576692 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 76600826 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 76606015 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 76617929 . G GACCAAGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 76620195 . tc tCCGCTCACCc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 76627669 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 76672061 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 76689310 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 76729901 . T A 7 . DP=7;AF1=0.5031;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.077,0.11,0.27 PL:DP:SP:GT:GQ 36,0,19:3:0:0/1:22 +chr10 76732425 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 76748099 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 76768205 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 76772344 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 76774968 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 76790922 . G GCA 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.33 PL:DP:SP:GT:GQ 41,0,73:3:0:0/1:44 +chr10 76796236 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 76798480 . g gCAGA 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 76827555 . T G 4.63 . DP=2;AF1=0.6241;CI95=0.5,1;DP4=0,1,0,1;MQ=30;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,4:2:0:0/1:6 +chr10 76833280 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 76841147 . a aCAT 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 76841297 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 76849523 . TGC TGCGC 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,43:2:0:0/1:43 +chr10 76854564 . C T 99 . DP=26;AF1=1;CI95=1,1;DP4=0,1,13,6;MQ=48;PV4=0.35,0.19,0.27,1 PL:DP:SP:GT:GQ 205,29,0:20:0:1/1:99 +chr10 76855326 . A G 9.31 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 76855412 . G A 99 . DP=49;AF1=1;CI95=1,1;DP4=1,0,9,29;MQ=44;PV4=0.26,1,9.9e-05,1 PL:DP:SP:GT:GQ 255,91,0:39:0:1/1:99 +chr10 76855597 . T TTC 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.29 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr10 76856668 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 76857274 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 76857716 . A G 96 . DP=10;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=47 PL:DP:SP:GT:GQ 129,27,0:9:0:1/1:99 +chr10 76861680 . T C 99 . DP=27;AF1=1;CI95=1,1;DP4=0,0,4,12;MQ=48 PL:DP:SP:GT:GQ 190,48,0:16:0:1/1:99 +chr10 76955593 . CCT CCTCTTATTCACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 76973735 . T C 15.1 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=17,0,7,0;MQ=49;PV4=1,0.005,0.00014,1 PL:DP:SP:GT:GQ 45,0,200:24:0:0/1:48 +chr10 76978605 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 76980515 . A C 3.54 . DP=10;AF1=0.4998;CI95=0.5,0.5;DP4=3,0,2,0;MQ=47;PV4=1,0.21,0.15,1 PL:DP:SP:GT:GQ 31,0,78:5:0:0/1:34 +chr10 76989595 . t tCTAG 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 77007917 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 77007925 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 77008914 . A T 3.01 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,1,0;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,39:2:0:0/1:32 +chr10 77029284 . A G 6.02 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr10 77062276 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 77085720 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 77102200 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 77105075 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 77124587 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 77129056 . t tTCTA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 77200854 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 77266452 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 77314801 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 77317399 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 77317403 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 77366393 . G A 4.13 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,1,0;MQ=42;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,34:2:0:0/1:33 +chr10 77397100 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 77414622 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 77429416 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 77454739 . A G 51.3 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,4,1;MQ=49 PL:DP:SP:GT:GQ 84,15,0:5:0:1/1:75 +chr10 77489335 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 77525603 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 77542236 . TT TTGCACT 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,39:2:0:0/1:41 +chr10 77542841 . A C 7.8 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=48;PV4=1,0.29,1,1 PL:DP:SP:GT:GQ 37,0,46:6:0:0/1:39 +chr10 77572780 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 77574901 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 77612455 . TG TGACTTGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 77622214 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 77650478 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 77673701 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 77675976 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 77689961 . G C 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 77700318 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 77706499 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 77717599 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 77745587 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 77778953 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 77783745 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 77818623 . C G 3.01 . DP=3;AF1=0.4997;CI95=0.5,0.5;DP4=0,2,1,0;MQ=45;PV4=0.33,0.085,0.3,1 PL:DP:SP:GT:GQ 30,0,77:3:0:0/1:33 +chr10 77825988 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 77839095 . TGGGTG T 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 77843207 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 77851160 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 77863902 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 77865813 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 77932593 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 77935713 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 77935737 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 77948101 . A C 7.59 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 77967010 . ag aGCACACACACg 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 77970889 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 77988880 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 77998848 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 78006088 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 78009299 . A ACCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 78028067 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 78036652 . g gCAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 78102854 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 78104011 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 78104020 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 78143749 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 78166705 . TTC TTCGGTTGCATC 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 78212133 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 78239707 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 78251286 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 78269867 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 78290389 . ga gATTa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 78301846 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 78405608 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 78438548 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 78456769 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 78481784 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 78490476 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 78506877 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 78522185 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 78529107 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 78546368 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 78565971 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 78649399 . C T 99 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=0,14,0,14;MQ=47;PV4=1,0.044,9.2e-09,1 PL:DP:SP:GT:GQ 181,0,227:28:0:0/1:99 +chr10 78674048 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 78680536 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 78728800 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 78744081 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 78786836 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 78791687 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 78828962 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 78864421 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 78867125 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 78876625 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 78935329 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 78937224 . T G 13 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=46 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr10 78974219 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 78983060 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 79017032 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 79046186 . c cCATAGGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 79046950 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 79055691 . TA TACTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 79062235 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 79082812 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 79082937 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 79083639 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 79095602 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 79110268 . G GGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 79123618 . A T 5.48 . DP=2;AF1=0.5039;CI95=0.5,0.5;DP4=1,0,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,18:2:0:0/1:21 +chr10 79139296 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 79147111 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 79167935 . CCTG C 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 79172924 . A ACGCGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 79183415 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 79191781 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 79192646 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 79211614 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 79220322 . at aTACACACTTt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 79245347 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 79282938 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 79301142 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 79306171 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 79311094 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 79322744 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 79346994 . C A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 79350789 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 79352577 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 79352885 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 79353072 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 79379065 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 79399766 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 79417319 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 79429945 . A C 4.77 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 79430731 . g gTTC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 79430802 . G T 8.65 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 79470931 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 79471555 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 79491688 . G A 3.54 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,44:2:0:0/1:34 +chr10 79494604 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 79516275 . tt tTGt 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 79517450 . tagacta t 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 79533286 . tcacaa t 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 79541428 . C T 38.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=49 PL:DP:SP:GT:GQ 71,12,0:4:0:1/1:72 +chr10 79552151 . T C 65 . DP=14;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=49 PL:DP:SP:GT:GQ 98,27,0:9:0:1/1:99 +chr10 79553673 . T C 8.44 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr10 79556029 . G T 99 . DP=18;AF1=1;CI95=1,1;DP4=0,0,1,12;MQ=43 PL:DP:SP:GT:GQ 246,39,0:13:0:1/1:99 +chr10 79565352 . G C 3.01 . DP=12;AF1=0.4997;CI95=0.5,0.5;DP4=5,0,3,0;MQ=48;PV4=1,0.097,1,1 PL:DP:SP:GT:GQ 30,0,76:8:0:0/1:33 +chr10 79567762 . C T 23.5 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=48 PL:DP:SP:GT:GQ 56,12,0:4:0:1/1:72 +chr10 79567774 . G C 85 . DP=12;AF1=1;CI95=1,1;DP4=0,0,0,11;MQ=48 PL:DP:SP:GT:GQ 118,33,0:11:0:1/1:99 +chr10 79570873 . G T 18.6 . DP=25;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=50 PL:DP:SP:GT:GQ 51,12,0:4:0:1/1:72 +chr10 79579047 . A G 8.61 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=50 PL:DP:SP:GT:GQ 40,9,0:3:0:1/1:63 +chr10 79579830 . G A 37 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=47 PL:DP:SP:GT:GQ 69,9,0:3:0:1/1:63 +chr10 79584178 . G C 99 . DP=32;AF1=1;CI95=1,1;DP4=0,0,2,7;MQ=48 PL:DP:SP:GT:GQ 133,27,0:9:0:1/1:99 +chr10 79590685 . C T 38.1 . DP=18;AF1=0.5064;CI95=0.5,0.5;DP4=0,1,0,6;MQ=48;PV4=1,0.032,0.16,1 PL:DP:SP:GT:GQ 68,0,16:7:0:0/1:19 +chr10 79590726 . C G 36.3 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=50 PL:DP:SP:GT:GQ 69,15,0:5:0:1/1:75 +chr10 79595798 . C T 30.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=45 PL:DP:SP:GT:GQ 62,6,0:2:0:1/1:49 +chr10 79609250 . T A 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 79614189 . A G 22.3 . DP=29;AF1=0.5336;CI95=0.5,1;DP4=1,0,2,1;MQ=48;PV4=1,1,0.22,1 PL:DP:SP:GT:GQ 52,0,9:4:0:0/1:12 +chr10 79616642 . C T 37 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=4,0,0,6;MQ=49;PV4=0.0048,0.0084,0.068,0.076 PL:DP:SP:GT:GQ 67,0,102:10:23:0/1:70 +chr10 79620927 . t tTATAGGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 79628875 . A G 7.59 . DP=13;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=49 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 79645129 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 79712467 . tcc tCCCcc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 79713699 . TG TGCG 3.25 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.0031 PL:DP:SP:GT:GQ 38,0,84:4:0:0/1:41 +chr10 79744174 . A G 4.13 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=0,2,0,1;MQ=48;PV4=1,0,0,1 PL:DP:SP:GT:GQ 32,0,83:3:0:0/1:35 +chr10 79745789 . A G 99 . DP=48;AF1=0.5;CI95=0.5,0.5;DP4=16,11,8,8;MQ=49;PV4=0.75,4.7e-16,5.6e-12,1 PL:DP:SP:GT:GQ 169,0,255:43:1:0/1:99 +chr10 79750820 . A T 5.46 . DP=20;AF1=0.4999;CI95=0.5,0.5;DP4=3,3,3,0;MQ=47;PV4=0.46,0.0042,1,1 PL:DP:SP:GT:GQ 34,0,145:9:3:0/1:37 +chr10 79760818 . A G 82 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=7,14,2,6;MQ=49;PV4=1,8e-05,3.1e-08,0.16 PL:DP:SP:GT:GQ 112,0,255:29:0:0/1:99 +chr10 79760969 . C CCT 5.08 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.33 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr10 79762028 . G A 83 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=1,3,2,4;MQ=47;PV4=1,0.0013,0.00076,1 PL:DP:SP:GT:GQ 113,0,136:10:0:0/1:99 +chr10 79769831 . T G 28 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 60,9,0:3:0:1/1:63 +chr10 79782276 . T C 29.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=49 PL:DP:SP:GT:GQ 62,12,0:4:0:1/1:72 +chr10 79806160 . ctgg c 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 79808238 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 79831332 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 79854447 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 79896235 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 79922607 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 80063553 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 80079480 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 80110859 . AG AGGAAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 80117253 . T C 5.29 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr10 80128555 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 80142528 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 80167052 . C G 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 80174563 . T TGCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 80177856 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 80203161 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 80220157 . T A,G 7.8 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=40 PL:DP:SP:GT:GQ 50,16,37,13,0,37:2:0:1/1:41 +chr10 80250656 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 80261625 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 80261686 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 80264059 . C A 4.77 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,44:2:0:0/1:36 +chr10 80268803 . G T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 80283733 . a aTTCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 80286793 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 80291358 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 80305379 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 80314547 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 80323091 . G GGCA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 80324540 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 80327194 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 80358739 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 80364929 . G A 4.84 . DP=2;AF1=0.5127;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,13:2:0:0/1:16 +chr10 80375926 . g gGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 80401014 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 80455836 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 80460660 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 80463895 . c cAACGAAGTGAGTTACAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 80464476 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 80516094 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 80524033 . AC ACATC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 80524512 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 80572639 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 80575821 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 80600974 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 80601630 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 80615127 . GTATT GT 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 80623390 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 80626115 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 80664086 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 80667327 . A AG 4.42 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 80668674 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 80668685 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 80674802 . C G 4.78 . DP=2;AF1=0.5011;CI95=0.5,0.5;DP4=0,1,0,1;MQ=41;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,23:2:0:0/1:26 +chr10 80676015 . GG GGGTTAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 80684745 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 80701555 . G GAACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 80704263 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 80709125 . CTGCATG CTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 80715046 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 80728530 . GGT GGTGT 3.8 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 39,0,43:2:0:0/1:41 +chr10 80758155 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 80765948 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 80785775 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 80785780 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 80795436 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 80807447 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 80812807 . AC ACC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 80814143 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 80857719 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 80861810 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 80865153 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 80866668 . A G 10.2 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr10 80871666 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 80895606 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 80902109 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 80949346 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 80978333 . att aTTTTTTAATtt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 80987968 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 81010037 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 81020795 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 81021236 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 81023144 . G A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 81036041 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 81037229 . G A 13 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=44 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr10 81050114 . T TGC 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 81052048 . A G 4.13 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,40:2:0:0/1:34 +chr10 81053475 . G A 54 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=0,16,0,8;MQ=49;PV4=1,4.3e-08,8.9e-06,0.15 PL:DP:SP:GT:GQ 84,0,237:24:0:0/1:87 +chr10 81060002 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 81062102 . T TTCA 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 81068165 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 81072123 . A AGGATAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 81081175 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 81086152 . T A 14.3 . DP=4;AF1=0.5207;CI95=0.5,1;DP4=1,0,1,1;MQ=46;PV4=1,1,0.45,0.11 PL:DP:SP:GT:GQ 44,0,11:3:0:0/1:14 +chr10 81086286 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 81089074 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 81113125 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 81120340 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 81142047 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 81142057 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 81152540 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 81163784 . GC GCCCAACC 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 81170540 . ggt gGTAACGAgt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 81178456 . GTG GTGTCTCTACTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 81192577 . A G 27 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,3;MQ=47;PV4=1,0.028,1,1 PL:DP:SP:GT:GQ 57,0,72:5:0:0/1:60 +chr10 81204218 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 81207802 . TTCTC TTCTCTC 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,39:2:0:0/1:41 +chr10 81208058 . GCC GCCTTCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 81208484 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 81222094 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 81222099 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 81244866 . A AATATGGGTAGCCAC 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=47 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 81260900 . a aACG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 81263634 . G A 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 81267889 . A C 9.31 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 81267896 . G T 17.1 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=46 PL:DP:SP:GT:GQ 49,9,0:3:0:1/1:63 +chr10 81274706 . G A 50.1 . DP=11;AF1=0.508;CI95=0.5,0.5;DP4=1,0,3,0;MQ=41;PV4=1,1,0.07,1 PL:DP:SP:GT:GQ 80,0,15:4:0:0/1:18 +chr10 81274719 . A C 26 . DP=8;AF1=0.5006;CI95=0.5,0.5;DP4=3,0,4,0;MQ=43;PV4=1,1,0.12,0.46 PL:DP:SP:GT:GQ 56,0,26:7:0:0/1:29 +chr10 81274984 . A C 18 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=47 PL:DP:SP:GT:GQ 50,9,0:3:0:1/1:63 +chr10 81276437 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 81277458 . C G 4.61 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=44 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr10 81281418 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 81282927 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 81313753 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 81318820 . G A 30 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,4;MQ=47;PV4=1,1,0.13,1 PL:DP:SP:GT:GQ 60,0,89:10:0:0/1:63 +chr10 81318821 . T C 19.1 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,6;MQ=49;PV4=1,0.026,1,0.12 PL:DP:SP:GT:GQ 49,0,136:14:0:0/1:52 +chr10 81321343 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 81344173 . TC TCTTGC 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 81345987 . TC TCGTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 81355361 . T G 83.1 . DP=49;AF1=1;CI95=1,1;DP4=0,0,4,3;MQ=47 PL:DP:SP:GT:GQ 116,21,0:7:0:1/1:84 +chr10 81355389 . G A 99 . DP=27;AF1=1;CI95=1,1;DP4=0,0,5,4;MQ=47 PL:DP:SP:GT:GQ 149,27,0:9:0:1/1:99 +chr10 81363291 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 81371637 . T C 3.01 . DP=11;AF1=0.4997;CI95=0.5,0.5;DP4=3,4,0,3;MQ=49;PV4=0.47,6.6e-05,0.014,1 PL:DP:SP:GT:GQ 30,0,238:10:3:0/1:33 +chr10 81371788 . A AAATTGAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 81371953 . C T 52 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=8,0,5,0;MQ=48;PV4=1,0.018,0.00054,0.36 PL:DP:SP:GT:GQ 82,0,184:13:0:0/1:85 +chr10 81372891 . A C 7.8 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=2,0,3,0;MQ=49;PV4=1,0.14,0.44,0.13 PL:DP:SP:GT:GQ 37,0,46:5:0:0/1:39 +chr10 81373777 . C T 18.1 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=2,3,1,2;MQ=48;PV4=1,0.09,0.015,1 PL:DP:SP:GT:GQ 48,0,148:8:0:0/1:51 +chr10 81411180 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 81428915 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 81443274 . GAG GAGTAG 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 81664247 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 81680725 . TTGC T 7.42 . INDEL;DP=2;AF1=0.5101;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,14:2:0:0/1:17 +chr10 81696411 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 81701722 . T C 43 . DP=47;AF1=0.5;CI95=0.5,0.5;DP4=4,22,1,9;MQ=49;PV4=1,1.9e-11,7.9e-05,1 PL:DP:SP:GT:GQ 73,0,255:36:0:0/1:76 +chr10 81705081 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 81705545 . T TTGTGCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 81706324 . A G 99 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=0,14,1,10;MQ=48;PV4=0.44,3.1e-05,5.2e-05,1 PL:DP:SP:GT:GQ 141,0,223:25:0:0/1:99 +chr10 81712556 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 81784967 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 81810422 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 81841870 . T C 28.5 . DP=19;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=49 PL:DP:SP:GT:GQ 61,12,0:4:0:1/1:72 +chr10 81864573 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 81882411 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 81886161 . tt tTGTAAt 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 81916737 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 81917708 . A G 68 . DP=39;AF1=0.5;CI95=0.5,0.5;DP4=11,6,18,0;MQ=49;PV4=0.0076,2.7e-10,0.018,1 PL:DP:SP:GT:GQ 98,0,255:35:21:0/1:99 +chr10 81920968 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 81922174 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 81923047 . A AGGACT 12.7 . INDEL;DP=8;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 81930159 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 81930489 . C T 10.4 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 81960144 . g gGCCGGGAAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 81969070 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 81997537 . G GATA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 82004816 . GC G 10.6 . INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=50 PL:DP:SP:GT:GQ 49,6,0:2:0:1/1:49 +chr10 82017014 . at aTTGt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 82038771 . C T 14.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 82040052 . A G 90.2 . DP=28;AF1=0.7303;CI95=0.5,1;DP4=0,1,4,5;MQ=48;PV4=1,0.057,0.26,1 PL:DP:SP:GT:GQ 119,0,2:10:0:0/1:3 +chr10 82043576 . G A 99 . DP=17;AF1=1;CI95=1,1;DP4=0,0,15,0;MQ=46 PL:DP:SP:GT:GQ 148,45,0:15:0:1/1:99 +chr10 82112488 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 82132458 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 82181009 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 82182296 . G A 17.6 . DP=32;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=49 PL:DP:SP:GT:GQ 50,12,0:4:0:1/1:72 +chr10 82182301 . C A 37 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=0,16,0,8;MQ=49;PV4=1,0.0053,0.00033,1 PL:DP:SP:GT:GQ 67,0,195:24:0:0/1:70 +chr10 82185728 . C T 5.46 . DP=21;AF1=0.4999;CI95=0.5,0.5;DP4=6,3,0,4;MQ=49;PV4=0.07,0.065,0.011,0.26 PL:DP:SP:GT:GQ 34,0,192:13:12:0/1:37 +chr10 82187345 . T TTC 7.35 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 82188949 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 82189478 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 82218659 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 82221735 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 82234639 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 82244154 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 82257598 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 82269611 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 82302014 . C CTTTTCTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 82331347 . A G 76 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=2,5,0,11;MQ=48;PV4=0.14,0.015,0.052,1 PL:DP:SP:GT:GQ 106,0,149:18:9:0/1:99 +chr10 82372161 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 82374537 . G GCC 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 82410044 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 82416238 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 82417905 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 82418031 . T A 4.85 . DP=2;AF1=0.9966;CI95=0.5,1;DP4=0,1,0,1;MQ=30;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,1,0:2:0:1/1:23 +chr10 82418449 . t tCCCAGC 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 82420204 . ca cAACACGCGTa 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 82458433 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 82459819 . G GCAT 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 82461128 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 82461669 . GA GAGAGATTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 82476016 . T C 42.3 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=49 PL:DP:SP:GT:GQ 75,15,0:5:0:1/1:75 +chr10 82494692 . a aGG 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 82497297 . A ACGTCATAGCAT 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 82552612 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 82628927 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 82638507 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 82660216 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 82679605 . C G 4.16 . DP=2;AF1=0.5062;CI95=0.5,0.5;DP4=1,0,1,0;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,16:2:0:0/1:19 +chr10 82757199 . C CCGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 82758014 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 82887916 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 82887926 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 82893579 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 82895456 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 82917142 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 82937203 . ca cATCAGa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 82951796 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 82956453 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 82956466 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 82971096 . G T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 82971333 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 82989755 . a aGCG 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 82999230 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 83075079 . ATC ATCAAACTGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 83075420 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 83083716 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 83087652 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 83095873 . c cACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 83130340 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 83151762 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 83162919 . a aAATGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 83173424 . G A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 83173648 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 83177028 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 83178200 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 83192634 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 83229796 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 83230546 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 83309249 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 83335268 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 83357418 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 83394070 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 83406543 . T A 3.98 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 33,6,0:2:0:1/1:49 +chr10 83435015 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 83438214 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 83439554 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 83444419 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 83457135 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 83479414 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 83488799 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 83489400 . AA AAAGGTGGAGGCGCTGA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 83534027 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 83551799 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 83607345 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 83636718 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 83642035 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 83690205 . ggtctc g 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 83703281 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 83703284 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 83722542 . gg gGGTg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 83728526 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 83768713 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 83775089 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 83801513 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 83803153 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 83810587 . C T 6.98 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,36:2:0:0/1:36 +chr10 83862133 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 83863601 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 83869677 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 83870442 . g gAGAAGTC 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 83905404 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 83910894 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 83965003 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 83968765 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 83981512 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 84005036 . t tACC 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 84021740 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 84038425 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 84042755 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 84043330 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 84054180 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 84060476 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 84065686 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 84077235 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 84120422 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 84125975 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 84129215 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 84130443 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 84141912 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 84163245 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 84166297 . T TCGAGC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 84166420 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 84166841 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 84175166 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 84212391 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 84235674 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 84267484 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 84280200 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 84284960 . G GTGTTAACA 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 84315759 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 84320595 . tttat tt 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 84338105 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 84339344 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 84355187 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 84394101 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 84408564 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 84440363 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 84456107 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 84457834 . T TTGAGTTCCCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 84477957 . gcc gCCcc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 84498193 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 84509110 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 84541844 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 84547020 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 84579748 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 84585149 . a aTGCCAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 84602787 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 84649739 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 84657295 . g gCTTCCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 84683572 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 84684477 . G T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 84718675 . A G 6.2 . DP=9;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=48;PV4=1,0.27,0.16,1 PL:DP:SP:GT:GQ 35,0,40:4:0:0/1:37 +chr10 84724236 . TA TAATAATTCGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 84745447 . T C 15.1 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,4;MQ=49;PV4=1,0.39,0.01,1 PL:DP:SP:GT:GQ 45,0,64:9:0:0/1:48 +chr10 84774792 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 84779668 . ta tACACa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 84828746 . C T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 84843813 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 84847522 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 84922235 . AG AGTG 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 84927128 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 84934525 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 84954621 . C G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 84964484 . G T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 85013695 . G T 3.57 . DP=2;AF1=0.5062;CI95=0.5,0.5;DP4=0,1,1,0;MQ=43;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,16:2:0:0/1:19 +chr10 85030799 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 85049599 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 85124194 . T TCTCAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 85176040 . at aTCt 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 85179162 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 85187260 . A G 7.02 . DP=2;AF1=0.5063;CI95=0.5,0.5;DP4=1,0,1,0;MQ=41;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,16:2:0:0/1:19 +chr10 85212410 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 85225284 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 85284571 . C A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 85289122 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 85317365 . GATAA GA 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 85324778 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 85345856 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 85373061 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 85402287 . G GTGGGCTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 85460447 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 85471910 . CA CACGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 85502547 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 85523529 . A ACCAAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 85535338 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 85560366 . g gCTGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 85625542 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 85628855 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 85651351 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 85662825 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 85666266 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 85674138 . C T 25.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 57,6,0:2:0:1/1:49 +chr10 85680042 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 85688953 . TCC TCCACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 85710591 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 85739388 . T A 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 85748545 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 85761694 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 85777111 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 85778591 . A T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 85792434 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 85796585 . c cTGGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 85798835 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 85801417 . a aTTCGAGAGAGAAGACCACT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 85836102 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 85852374 . CA CAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 85862287 . t tTCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 85902496 . A T 10.4 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=3,5,0,5;MQ=48;PV4=0.23,1,0.033,1 PL:DP:SP:GT:GQ 40,0,99:13:6:0/1:43 +chr10 85903726 . C G 3.05 . DP=41;AF1=0.5078;CI95=0.5,0.5;DP4=1,0,3,0;MQ=50;PV4=1,0.024,1,1 PL:DP:SP:GT:GQ 30,0,15:4:0:0/1:18 +chr10 85904756 . T G 6.98 . DP=23;AF1=0.4999;CI95=0.5,0.5;DP4=7,3,0,4;MQ=50;PV4=0.07,0.026,0.00097,1 PL:DP:SP:GT:GQ 36,0,225:14:12:0/1:39 +chr10 85905883 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 85910655 . T G 48.3 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=48 PL:DP:SP:GT:GQ 81,15,0:5:0:1/1:75 +chr10 85941720 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 85952805 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 85968019 . A C 6.98 . DP=26;AF1=0.4999;CI95=0.5,0.5;DP4=2,6,3,0;MQ=49;PV4=0.061,0.015,2.4e-05,1 PL:DP:SP:GT:GQ 36,0,221:11:12:0/1:39 +chr10 85968658 . A T 6.2 . DP=15;AF1=0.4999;CI95=0.5,0.5;DP4=0,6,0,3;MQ=49;PV4=1,0.17,0.036,1 PL:DP:SP:GT:GQ 35,0,121:9:0:0/1:38 +chr10 85970696 . G A 7.59 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 85974381 . A G 44 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=0,19,0,14;MQ=49;PV4=1,2.9e-13,0.11,1 PL:DP:SP:GT:GQ 74,0,241:33:0:0/1:77 +chr10 85974567 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 85981889 . G A 4.77 . DP=3;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,2,0;MQ=49;PV4=1,0.047,0.33,0.17 PL:DP:SP:GT:GQ 33,0,41:3:0:0/1:35 +chr10 85984149 . C G 33 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=3,6,10,0;MQ=48;PV4=0.0031,0.00053,0.045,1 PL:DP:SP:GT:GQ 63,0,209:19:25:0/1:66 +chr10 85989772 . T A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 85992511 . T C 99 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=10,1,7,5;MQ=48;PV4=0.15,6.4e-06,0.00057,1 PL:DP:SP:GT:GQ 171,0,240:23:8:0/1:99 +chr10 85993836 . A G 99 . DP=27;AF1=1;CI95=1,1;DP4=0,1,9,13;MQ=46;PV4=1,1,0.11,1 PL:DP:SP:GT:GQ 255,49,0:23:0:1/1:99 +chr10 85994142 . A G 4.13 . DP=20;AF1=0.4998;CI95=0.5,0.5;DP4=1,5,0,3;MQ=50;PV4=1,0.0039,0.027,1 PL:DP:SP:GT:GQ 32,0,193:9:0:0/1:35 +chr10 86001916 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 86004873 . T C 75.1 . DP=24;AF1=1;CI95=1,1;DP4=0,0,2,5;MQ=49 PL:DP:SP:GT:GQ 108,21,0:7:0:1/1:84 +chr10 86008747 . C T 27 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=10,1,4,0;MQ=48;PV4=1,1,0.0034,1 PL:DP:SP:GT:GQ 57,0,129:15:0:0/1:60 +chr10 86012713 . C T 99 . DP=27;AF1=1;CI95=1,1;DP4=0,0,6,18;MQ=45 PL:DP:SP:GT:GQ 255,72,0:24:0:1/1:99 +chr10 86021964 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 86024532 . CAGT C 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 86026633 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 86070584 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 86123236 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 86149108 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 86158009 . T A 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 86181314 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 86185654 . T G 57.1 . DP=30;AF1=1;CI95=1,1;DP4=0,0,1,6;MQ=49 PL:DP:SP:GT:GQ 90,21,0:7:0:1/1:84 +chr10 86211558 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 86226286 . ag aGGGCGg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 86251493 . a aGG 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 86252865 . a aTTGGATCGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 86293556 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 86311649 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 86320383 . G A 65 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=9,11,5,7;MQ=37;PV4=1,1.9e-10,9.5e-05,0.49 PL:DP:SP:GT:GQ 95,0,255:32:0:0/1:98 +chr10 86320631 . A G 3.01 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=1,1,0,2;MQ=32;PV4=1,0.35,0.42,1 PL:DP:SP:GT:GQ 30,0,44:4:0:0/1:33 +chr10 86324932 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 86340136 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 86357830 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 86362484 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 86362787 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 86367384 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 86379603 . t tGTG 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 86383260 . C A 12.3 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 86393047 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 86418739 . T TAA 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 86420493 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 86434639 . A ATGCTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 86451556 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 86456291 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 86458385 . C G 4.14 . DP=2;AF1=0.5024;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,20:2:0:0/1:23 +chr10 86476818 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 86479458 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 86495365 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 86504553 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 86523863 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 86530573 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 86583586 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 86590539 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 86590802 . A AAGTACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 86620711 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 86640959 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 86652677 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 86700369 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 86715032 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 86726910 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 86728198 . G T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 86741577 . T TGCATA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 86744523 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 86754996 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 86759660 . c cCAAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 86805336 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 86863050 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 86898606 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 86961910 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 86989902 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 86997491 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 87002647 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 87088997 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 87198046 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 87208816 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 87211607 . A AGAGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 87219035 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 87246833 . a aCTCGACTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 87247539 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 87267276 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 87298109 . C CCT 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 87306327 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 87315910 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 87318943 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 87323076 . TGC TGCAGC 9.05 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr10 87323113 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 87339813 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 87393499 . ACT ACTCT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 87413604 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 87422101 . G T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 87468735 . C T 10.2 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=43 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr10 87468742 . A C 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 87482854 . C A 5.46 . DP=33;AF1=0.4999;CI95=0.5,0.5;DP4=12,5,0,6;MQ=49;PV4=0.0046,0.00069,0.0033,1 PL:DP:SP:GT:GQ 34,0,255:23:23:0/1:37 +chr10 87482855 . CAT CATAT 19.5 . INDEL;DP=35;AF1=0.5;CI95=0.5,0.5;DP4=8,7,0,3;MQ=50;PV4=0.22,1,1,0.059 PL:DP:SP:GT:GQ 57,0,255:18:7:0/1:60 +chr10 87482991 . C T 4.13 . DP=5;AF1=0.4998;CI95=0.5,0.5;DP4=0,3,0,2;MQ=49;PV4=1,0.057,0.0034,1 PL:DP:SP:GT:GQ 32,0,76:5:0:0/1:35 +chr10 87491000 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 87555666 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 87562756 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 87627368 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 87700608 . A T 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 87707267 . C T 6.2 . DP=11;AF1=0.4999;CI95=0.5,0.5;DP4=3,1,0,3;MQ=49;PV4=0.14,0.064,1,1 PL:DP:SP:GT:GQ 35,0,116:7:8:0/1:38 +chr10 87708811 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 87720176 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 87731985 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 87736292 . G GGATC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 87748502 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 87751600 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 87807122 . ATT A 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 87809706 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 87813088 . T A 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 87815027 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 87818237 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 87850930 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 87857603 . TAA TAATGTGGGGAA 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 87874388 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 87889968 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 87926450 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 87927738 . A AATAACACTCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 87939066 . TCCCC TCCCCCC 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 87942496 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 87966608 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 88011651 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 88012390 . T TCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 88026548 . A C 7.59 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 88027222 . C CACTTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 88046628 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 88051505 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 88054154 . G C 6.98 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,44:2:0:0/1:38 +chr10 88073863 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 88117355 . A G 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 88140431 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 88144281 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 88153604 . A ATCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 88180534 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 88187022 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 88213651 . A G 65.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=44 PL:DP:SP:GT:GQ 98,12,0:4:0:1/1:72 +chr10 88220866 . C T 31 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=47;PV4=1,0.007,0,1 PL:DP:SP:GT:GQ 61,0,80:4:0:0/1:64 +chr10 88231617 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 88233628 . C G 77 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=6,0,7,1;MQ=48;PV4=1,0.00086,0.0007,1 PL:DP:SP:GT:GQ 107,0,148:14:0:0/1:99 +chr10 88256943 . C T 57 . DP=9;AF1=0.5001;CI95=0.5,0.5;DP4=3,0,1,4;MQ=48;PV4=0.14,1,0.09,0.43 PL:DP:SP:GT:GQ 87,0,35:8:8:0/1:38 +chr10 88277875 . A G 10.6 . DP=3;AF1=0.5207;CI95=0.5,1;DP4=0,1,0,2;MQ=47;PV4=1,1,0,1 PL:DP:SP:GT:GQ 40,0,11:3:0:0/1:14 +chr10 88296464 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 88345959 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 88356554 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 88418535 . C T 50 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=45 PL:DP:SP:GT:GQ 82,9,0:3:0:1/1:63 +chr10 88419122 . C T 23 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=5,4,1,4;MQ=48;PV4=0.3,0.45,0.013,1 PL:DP:SP:GT:GQ 53,0,130:14:5:0/1:56 +chr10 88419641 . G A 77 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=5,1,3,3;MQ=48;PV4=0.55,0.00069,0.00054,0.49 PL:DP:SP:GT:GQ 107,0,186:12:3:0/1:99 +chr10 88420974 . GCCC GCCCCGCCCC 3.25 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 88424771 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 88425754 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 88428081 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 88428429 . C A 19.1 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=8,2,4,0;MQ=48;PV4=1,0.25,0.00016,1 PL:DP:SP:GT:GQ 49,0,184:14:0:0/1:52 +chr10 88446794 . T TGTCATCCG 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 88447382 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 88459892 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 88469566 . C G 3.01 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,37:2:0:0/1:32 +chr10 88470359 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 88476122 . T G 28 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=1,9,0,5;MQ=48;PV4=1,0.18,0.00077,1 PL:DP:SP:GT:GQ 58,0,166:15:0:0/1:61 +chr10 88486102 . CT C 8.18 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=50;PV4=1,0.17,1,1 PL:DP:SP:GT:GQ 45,0,55:4:0:0/1:48 +chr10 88492815 . T TTAGATGA 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,113:4:0:0/1:41 +chr10 88494716 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 88520436 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 88576450 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 88592621 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 88606531 . GTC GTCGCACTC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 88606601 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 88611575 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 88614656 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 88617531 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 88621945 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 88659912 . T C 11.1 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=40 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 +chr10 88677115 . T G 4.77 . DP=13;AF1=0.4999;CI95=0.5,0.5;DP4=1,4,0,3;MQ=50;PV4=1,0.11,0.11,1 PL:DP:SP:GT:GQ 33,0,88:8:0:0/1:36 +chr10 88683490 . GGAG GGAGAG 12.7 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 88698619 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 88702350 . G C 30 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=47 PL:DP:SP:GT:GQ 62,9,0:3:0:1/1:63 +chr10 88704914 . G GTGT 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.12 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr10 88711157 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 88730374 . C T 15.1 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,2;MQ=47;PV4=1,0.05,0.11,1 PL:DP:SP:GT:GQ 45,0,37:3:0:0/1:39 +chr10 88758144 . T A 9.31 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 88761481 . T C 7.8 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,3;MQ=37;PV4=1,0.34,1,0.32 PL:DP:SP:GT:GQ 37,0,67:9:0:0/1:40 +chr10 88768253 . A G 99 . DP=54;AF1=1;CI95=1,1;DP4=1,0,28,18;MQ=21;PV4=1,1,0.0001,1 PL:DP:SP:GT:GQ 209,116,0:47:0:1/1:99 +chr10 88768423 . A G 37 . DP=59;AF1=0.5;CI95=0.5,0.5;DP4=16,17,8,13;MQ=22;PV4=0.58,1.7e-16,0.061,1 PL:DP:SP:GT:GQ 67,0,195:54:2:0/1:70 +chr10 88768657 . C T 99 . DP=43;AF1=1;CI95=1,1;DP4=1,1,17,10;MQ=43;PV4=1,0.18,1,1 PL:DP:SP:GT:GQ 255,49,0:29:0:1/1:99 +chr10 88769295 . G T 3.54 . DP=17;AF1=0.4998;CI95=0.5,0.5;DP4=5,5,4,0;MQ=47;PV4=0.22,0.026,0.25,1 PL:DP:SP:GT:GQ 31,0,246:14:7:0/1:34 +chr10 88769310 . A G 4.77 . DP=14;AF1=0.4999;CI95=0.5,0.5;DP4=0,4,3,0;MQ=48;PV4=0.029,0.045,0.21,0.045 PL:DP:SP:GT:GQ 33,0,68:7:15:0/1:36 +chr10 88769747 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 88786419 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 88811625 . T C 19.1 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=7,4,0,5;MQ=49;PV4=0.034,0.037,0.0073,0.16 PL:DP:SP:GT:GQ 49,0,239:16:15:0/1:52 +chr10 88815264 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 88818720 . T C 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 88819954 . G A 48 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=3,1,1,2;MQ=46;PV4=0.49,0.17,0.045,1 PL:DP:SP:GT:GQ 78,0,123:7:3:0/1:81 +chr10 88820356 . G C 6.2 . DP=13;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,4,0;MQ=48;PV4=1,0.011,0.072,1 PL:DP:SP:GT:GQ 35,0,114:8:0:0/1:38 +chr10 88825843 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 88908337 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 88908346 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 88939927 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 88988193 . C A 3.03 . DP=2;AF1=0.5037;CI95=0.5,0.5;DP4=1,0,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,18:2:0:0/1:21 +chr10 89148667 . A G 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 89221269 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 89255258 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 89277019 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 89277227 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 89280764 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 89301240 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 89309928 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 89312349 . G GAGCT 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 89337672 . t tTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 89348670 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 89351682 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 89351838 . a aTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 89388739 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 89430429 . AG AGAAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 89441440 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 89454249 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 89464169 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 89469083 . CATATATATATATATATATA CATATATATATATATA 37.5 . INDEL;DP=21;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=50;PV4=1,1,1,0.39 PL:DP:SP:GT:GQ 75,0,56:4:0:0/1:59 +chr10 89469097 . TA TACA 33.5 . INDEL;DP=12;AF1=0.5005;CI95=0.5,0.5;DP4=1,0,2,0;MQ=50;PV4=1,1,1,0.33 PL:DP:SP:GT:GQ 71,0,27:3:0:0/1:30 +chr10 89490608 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 89495465 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 89511728 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 89518846 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 89535827 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 89598275 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 89603677 . C T 3.54 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,44:2:0:0/1:34 +chr10 89613914 . a aCAAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 89631139 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 89633222 . a aTTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 89651827 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 89673402 . tcttc t 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 89690952 . ttta tTTATCtta 32.2 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 71,6,0:2:0:1/1:49 +chr10 89695474 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 89697521 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 89698851 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 89728530 . TC TCTGTCC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 89737086 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 89783945 . ga gACa 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr10 89784629 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 89787518 . CTC CTCTTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 89796331 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 89814630 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 89851840 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 89911816 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 89952634 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 89967999 . T TAGTGGGGATAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 89972699 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 89984258 . TT TTTAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 89992185 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 90001697 . TCT TCTGCGCGCCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 90020532 . T TGGCATA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 90041225 . GGG GGGCAGCTAGCTGG 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 90043114 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 90091871 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 90094058 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 90111297 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 90121243 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 90129568 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 90130787 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 90138628 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 90169240 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 90198943 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 90223529 . TA TAGAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 90242132 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 90261721 . a aGAGGGGGGAG 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 90266451 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 90287556 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 90288228 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 90289232 . G T 4.18 . DP=2;AF1=0.51;CI95=0.5,0.5;DP4=1,0,0,1;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,14:2:0:0/1:17 +chr10 90302291 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 90353667 . A C 5.46 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=49;PV4=1,0.41,1,1 PL:DP:SP:GT:GQ 34,0,37:6:0:0/1:35 +chr10 90353833 . C T 99 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=2,11,0,12;MQ=47;PV4=0.48,0.00087,4.2e-11,1 PL:DP:SP:GT:GQ 176,0,255:25:3:0/1:99 +chr10 90354423 . G C 36 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=3,0,4,0;MQ=41;PV4=1,0.061,0.014,0.35 PL:DP:SP:GT:GQ 66,0,99:7:0:0/1:69 +chr10 90354430 . T C 83 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=5,0,5,1;MQ=44;PV4=1,0.034,0.011,0.46 PL:DP:SP:GT:GQ 113,0,150:11:0:0/1:99 +chr10 90354589 . A G 35 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,3;MQ=47;PV4=1,0.29,0.015,1 PL:DP:SP:GT:GQ 65,0,52:5:0:0/1:55 +chr10 90356598 . A G 99 . DP=15;AF1=1;CI95=1,1;DP4=0,0,5,7;MQ=43 PL:DP:SP:GT:GQ 255,36,0:12:0:1/1:99 +chr10 90362383 . A C 3.01 . DP=20;AF1=0.4997;CI95=0.5,0.5;DP4=0,10,4,0;MQ=49;PV4=0.001,0.0012,0.049,1 PL:DP:SP:GT:GQ 30,0,198:14:30:0/1:33 +chr10 90365293 . CA CACGCGAA 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 90376421 . C T 46 . DP=5;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,1,1;MQ=42;PV4=1,0.2,1,1 PL:DP:SP:GT:GQ 76,0,33:3:0:0/1:36 +chr10 90399123 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 90404926 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 90428286 . A C 8.65 . DP=10;AF1=0.5008;CI95=0.5,0.5;DP4=2,0,3,0;MQ=47;PV4=1,0.38,0.17,1 PL:DP:SP:GT:GQ 38,0,25:5:0:0/1:28 +chr10 90438327 . T G 6.2 . DP=41;AF1=0.4999;CI95=0.5,0.5;DP4=14,6,0,7;MQ=49;PV4=0.0019,0.00013,0.00028,1 PL:DP:SP:GT:GQ 35,0,255:27:27:0/1:38 +chr10 90487906 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 90523485 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 90537506 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 90545972 . T G 16.1 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 48,9,0:3:0:1/1:63 +chr10 90546007 . A G 4.61 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr10 90546055 . C T 85 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=3,1,3,3;MQ=47;PV4=0.57,0.00036,0.00044,1 PL:DP:SP:GT:GQ 115,0,147:10:2:0/1:99 +chr10 90546142 . T G 8.44 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr10 90549132 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 90563750 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 90565291 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 90567596 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 90570928 . C T 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 90585819 . G A 99 . DP=23;AF1=1;CI95=1,1;DP4=0,1,13,5;MQ=49;PV4=0.32,0.039,0.31,1 PL:DP:SP:GT:GQ 156,28,0:19:0:1/1:99 +chr10 90600588 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 90607824 . ttt tTTTCtt 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 90615705 . gg gGCg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 90634858 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 90635749 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 90652027 . T A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 90671471 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 90674251 . A C 96 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=14,0,13,0;MQ=49;PV4=1,9e-08,0.00048,1 PL:DP:SP:GT:GQ 126,0,228:27:0:0/1:99 +chr10 90700899 . A G 4.77 . DP=3;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,1,0;MQ=48;PV4=1,0,0,1 PL:DP:SP:GT:GQ 33,0,83:3:0:0/1:36 +chr10 90751809 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 90752460 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 90767395 . G C 99 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=43 PL:DP:SP:GT:GQ 167,18,0:6:0:1/1:90 +chr10 90770439 . C G 99 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=15,4,7,4;MQ=47;PV4=0.42,0.037,8.5e-08,0.026 PL:DP:SP:GT:GQ 234,0,255:30:4:0/1:99 +chr10 90771829 . T C 47.3 . DP=32;AF1=0.543;CI95=0.5,1;DP4=0,1,0,8;MQ=48;PV4=1,0.014,0.15,0.081 PL:DP:SP:GT:GQ 77,0,8:9:0:0/1:11 +chr10 90783373 . TCACA TCA 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 90812175 . GTA GTAGCTCTTACTA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 90817798 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 90859916 . TT TTTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 90862777 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 90867468 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 90877078 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 90884968 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 90904391 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 90937828 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 90966238 . G A 15.9 . DP=6;AF1=0.6243;CI95=0.5,1;DP4=1,0,3,0;MQ=48;PV4=1,1,0.21,0.16 PL:DP:SP:GT:GQ 45,0,4:4:0:0/1:6 +chr10 90966546 . C T 99 . DP=60;AF1=1;CI95=1,1;DP4=1,1,7,34;MQ=50;PV4=0.34,0.0014,0.33,1 PL:DP:SP:GT:GQ 133,78,0:43:5:1/1:99 +chr10 90966996 . C G 58 . DP=10;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=49 PL:DP:SP:GT:GQ 91,27,0:9:0:1/1:99 +chr10 90967043 . AG AGGG 12.7 . INDEL;DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 90996040 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 91005901 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 91024063 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 91066460 . T A 50.1 . DP=42;AF1=1;CI95=1,1;DP4=0,0,4,3;MQ=50 PL:DP:SP:GT:GQ 83,21,0:7:0:1/1:84 +chr10 91066769 . C A 22.1 . DP=41;AF1=0.508;CI95=0.5,0.5;DP4=1,0,1,2;MQ=48;PV4=1,0.0099,0.25,1 PL:DP:SP:GT:GQ 52,0,15:4:0:0/1:18 +chr10 91070751 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 91092177 . TT TTTCGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 91099943 . C G 31 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=47 PL:DP:SP:GT:GQ 63,9,0:3:0:1/1:63 +chr10 91122549 . C T 4.23 . DP=4;AF1=0.5205;CI95=0.5,0.5;DP4=1,0,0,2;MQ=48;PV4=0.33,1,0.33,1 PL:DP:SP:GT:GQ 32,0,11:3:0:0/1:14 +chr10 91128219 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 91128222 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 91137826 . T C 99 . DP=24;AF1=1;CI95=0.5,1;DP4=1,0,13,0;MQ=45;PV4=1,1,0.07,1 PL:DP:SP:GT:GQ 182,15,0:14:0:1/1:75 +chr10 91137974 . T G 4.84 . DP=12;AF1=0.5127;CI95=0.5,0.5;DP4=0,1,0,2;MQ=49;PV4=1,1,0.17,0.41 PL:DP:SP:GT:GQ 33,0,13:3:0:0/1:16 +chr10 91141345 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 91143529 . T A 4.61 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr10 91144490 . T G 7.8 . DP=6;AF1=0.5012;CI95=0.5,0.5;DP4=0,2,0,2;MQ=44;PV4=1,1,1,0.12 PL:DP:SP:GT:GQ 37,0,23:4:0:0/1:26 +chr10 91147856 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 91162182 . C T 57 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=1,10,1,6;MQ=49;PV4=1,0.00015,0.022,1 PL:DP:SP:GT:GQ 87,0,236:18:0:0/1:90 +chr10 91162677 . C T 99 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=6,2,5,2;MQ=48;PV4=1,0.0071,0.0038,1 PL:DP:SP:GT:GQ 131,0,218:15:0:0/1:99 +chr10 91174554 . TC TCGTGAC 5.08 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,0.15,1,0.05 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr10 91177772 . A G 14.7 . DP=20;AF1=0.5718;CI95=0.5,1;DP4=1,0,2,1;MQ=49;PV4=1,1,0.21,0.4 PL:DP:SP:GT:GQ 44,0,6:4:0:0/1:8 +chr10 91178000 . C T 99 . DP=42;AF1=1;CI95=1,1;DP4=0,1,3,35;MQ=48;PV4=1,0.0097,0.11,1 PL:DP:SP:GT:GQ 185,83,0:39:0:1/1:99 +chr10 91197692 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 91222287 . A C 9.49 . DP=32;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 41,9,0:3:0:1/1:63 +chr10 91227415 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 91246833 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 91261216 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 91265967 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 91278933 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 91280662 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 91286050 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 91339921 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 91352942 . GT GTGTT 3.25 . INDEL;DP=25;AF1=0.5;CI95=0.5,0.5;DP4=2,1,1,0;MQ=50;PV4=1,1,1,0.16 PL:DP:SP:GT:GQ 38,0,88:4:0:0/1:41 +chr10 91352944 . A T 3.01 . DP=24;AF1=0.4997;CI95=0.5,0.5;DP4=2,1,1,1;MQ=48;PV4=1,0.037,0.34,1 PL:DP:SP:GT:GQ 30,0,111:5:0:0/1:33 +chr10 91352948 . C T 41 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=3,2,3,2;MQ=46;PV4=1,0.048,0.1,1 PL:DP:SP:GT:GQ 71,0,137:10:0:0/1:74 +chr10 91352966 . G A 99 . DP=20;AF1=1;CI95=1,1;DP4=0,0,5,13;MQ=49 PL:DP:SP:GT:GQ 173,54,0:18:0:1/1:99 +chr10 91354354 . A G 44.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=43 PL:DP:SP:GT:GQ 77,12,0:4:0:1/1:72 +chr10 91354359 . A G 11.1 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=44 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 +chr10 91354372 . T G 11.1 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=42 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 +chr10 91359342 . GA GACCTGACAA 7.52 . INDEL;DP=8;AF1=0.5263;CI95=0.5,1;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,10:2:0:0/1:13 +chr10 91371844 . C T 22 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=0,14,0,13;MQ=50;PV4=1,3.9e-12,0.15,1 PL:DP:SP:GT:GQ 52,0,227:27:0:0/1:55 +chr10 91375693 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 91404332 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 91434498 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 91436481 . GA GAGCAA 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr10 91438201 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 91448700 . A G 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 91469653 . TA TAGA 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 91469725 . T TCG 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr10 91477145 . A G 12 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr10 91478319 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 91487649 . A T 18.8 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 50,6,0:2:0:1/1:49 +chr10 91498127 . T C 99 . DP=28;AF1=1;CI95=1,1;DP4=0,0,2,20;MQ=47 PL:DP:SP:GT:GQ 195,66,0:22:0:1/1:99 +chr10 91522605 . G C 99 . DP=15;AF1=1;CI95=0.5,1;DP4=0,1,0,9;MQ=43;PV4=1,1,0.45,1 PL:DP:SP:GT:GQ 163,14,0:10:0:1/1:70 +chr10 91555853 . ag aGTCCTGGg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 91573508 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 91593434 . tt tTCCt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 91599536 . tag tAGag 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 91609760 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 91615524 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 91643941 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 91645325 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 91676499 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 91679626 . T A 4.77 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 91685794 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 91738755 . T C 71.3 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,2,3;MQ=47 PL:DP:SP:GT:GQ 104,15,0:5:0:1/1:75 +chr10 91784676 . C G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 91795602 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 91812553 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 91814660 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 91822116 . T G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 91826863 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 91888556 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 91904505 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 91937076 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 91973550 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 91978154 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 91997146 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 92025009 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 92057538 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 92111437 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 92124892 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 92140189 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 92151151 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 92214350 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 92243044 . caag c 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 92243945 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 92249362 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 92284546 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 92284566 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 92289304 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 92368328 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 92384075 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 92391273 . aa aATTTGGTTa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 92439704 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 92445617 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 92493475 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 92509348 . G A 28 . DP=11;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,0,4;MQ=46;PV4=0.2,0.00036,0.15,0.017 PL:DP:SP:GT:GQ 58,0,35:5:0:0/1:38 +chr10 92537599 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 92538774 . A T 3.59 . DP=2;AF1=0.51;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,14:2:0:0/1:17 +chr10 92544022 . T TTTGGCCAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 92550623 . aga aGATTCTAGga 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 92573198 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 92589330 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 92604898 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 92617589 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 92635721 . A G 6.79 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr10 92638707 . CAGTA CAGTAGTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 92675317 . G C 6.2 . DP=17;AF1=0.4999;CI95=0.5,0.5;DP4=4,1,3,0;MQ=49;PV4=1,0.21,0.028,1 PL:DP:SP:GT:GQ 35,0,88:8:0:0/1:38 +chr10 92678644 . T C 4.13 . DP=20;AF1=0.4998;CI95=0.5,0.5;DP4=2,2,2,0;MQ=48;PV4=0.47,1,0.24,1 PL:DP:SP:GT:GQ 32,0,55:6:3:0/1:35 +chr10 92678744 . a aTC 12.7 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 92680858 . A G 4.13 . DP=12;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,3;MQ=48;PV4=1,0.29,0.31,0.49 PL:DP:SP:GT:GQ 32,0,35:5:0:0/1:33 +chr10 92686533 . C T 4.13 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,0,1;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,44:2:0:0/1:35 +chr10 92724831 . T TCC 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 92744379 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 92776526 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 92813600 . A G 14.2 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,1;MQ=48;PV4=1,0.22,0.33,1 PL:DP:SP:GT:GQ 44,0,38:3:0:0/1:40 +chr10 92830619 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 92855089 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 92862055 . g gAC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 92894100 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 92920368 . GGA GGAGTCGA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 92920854 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 92934409 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 92951310 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 93000211 . G A 80 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=9,0,8,0;MQ=48;PV4=1,5.9e-06,2.9e-05,1 PL:DP:SP:GT:GQ 110,0,202:17:0:0/1:99 +chr10 93026047 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 93039473 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 93043372 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 93147890 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 93150514 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 93169342 . ACT A 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 93173628 . CTG CTGGTG 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 93192344 . G GGAGGGGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 93224382 . T A 3.69 . DP=3;AF1=0.5334;CI95=0.5,1;DP4=1,0,2,0;MQ=49;PV4=1,1,0,0.055 PL:DP:SP:GT:GQ 31,0,9:3:0:0/1:12 +chr10 93228663 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 93238035 . T C 5.46 . DP=11;AF1=0.4999;CI95=0.5,0.5;DP4=0,3,0,2;MQ=46;PV4=1,0.22,0.05,0.46 PL:DP:SP:GT:GQ 34,0,65:5:0:0/1:37 +chr10 93247572 . A C 10.2 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr10 93247599 . T C 7.8 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,2;MQ=45;PV4=1,0.098,0.2,1 PL:DP:SP:GT:GQ 37,0,38:3:0:0/1:37 +chr10 93257936 . T G 3.01 . DP=12;AF1=0.4998;CI95=0.5,0.5;DP4=1,1,0,2;MQ=49;PV4=1,0.25,0.048,1 PL:DP:SP:GT:GQ 30,0,57:4:0:0/1:33 +chr10 93258596 . C G 4.61 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr10 93259162 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 93269781 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 93300368 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 93370835 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 93408766 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 93423278 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 93426709 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 93439842 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 93461463 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 93488081 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 93496289 . aga aGATTCGga 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 93498177 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 93503647 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 93550795 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 93556896 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 93574633 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 93579412 . T C 6.2 . DP=3;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 35,0,42:2:0:0/1:37 +chr10 93601285 . G C 38 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,3;MQ=45;PV4=1,0.09,0.19,1 PL:DP:SP:GT:GQ 68,0,38:4:0:0/1:41 +chr10 93604827 . A G 4.17 . DP=6;AF1=0.5079;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.23,0.17,1 PL:DP:SP:GT:GQ 32,0,15:3:0:0/1:18 +chr10 93608142 . G A 17.1 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=4,7,4,1;MQ=49;PV4=0.28,0.0068,0.016,0.19 PL:DP:SP:GT:GQ 47,0,255:16:5:0/1:50 +chr10 93611176 . ATATG ATATGTATG 74.5 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,3;MQ=50;PV4=1,1,1,0.25 PL:DP:SP:GT:GQ 112,0,77:5:0:0/1:80 +chr10 93613037 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 93623390 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 93634848 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 93686791 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 93695432 . T G 4.13 . DP=24;AF1=0.4998;CI95=0.5,0.5;DP4=11,1,0,4;MQ=49;PV4=0.0027,0.084,2.1e-06,1 PL:DP:SP:GT:GQ 32,0,198:16:26:0/1:35 +chr10 93702377 . T G 72 . DP=18;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=48 PL:DP:SP:GT:GQ 105,24,0:8:0:1/1:96 +chr10 93723795 . T C 6.2 . DP=17;AF1=0.4999;CI95=0.5,0.5;DP4=9,2,3,0;MQ=49;PV4=1,0.13,1.7e-05,1 PL:DP:SP:GT:GQ 35,0,221:14:0:0/1:38 +chr10 93726563 . ta tCCa 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 93736600 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 93746223 . C CCTTTAAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 93752036 . T G 10.4 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=2,9,0,5;MQ=49;PV4=1,0.1,0.13,1 PL:DP:SP:GT:GQ 40,0,182:16:0:0/1:43 +chr10 93761342 . g gACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 93763651 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 93773922 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 93775008 . A AGCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 93778645 . T A 6.98 . DP=26;AF1=0.4999;CI95=0.5,0.5;DP4=12,1,0,6;MQ=49;PV4=0.00026,0.00012,0.0024,1 PL:DP:SP:GT:GQ 36,0,241:19:36:0/1:39 +chr10 93802534 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 93841227 . A G 99 . DP=28;AF1=1;CI95=1,1;DP4=1,0,8,13;MQ=46;PV4=0.41,1,0.053,1 PL:DP:SP:GT:GQ 255,42,0:22:0:1/1:99 +chr10 93866695 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 93881558 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 93882855 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 93891656 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 93921930 . T A 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 93926913 . gg gGACATTCTTAg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 93933682 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 93956184 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 93974267 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 93997867 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 94110772 . TC TCCC 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 94111721 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 94156769 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 94161554 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 94165121 . G GA 5.62 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr10 94181698 . t tGACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 94209872 . A T 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 94225633 . A C 4.13 . DP=11;AF1=0.4998;CI95=0.5,0.5;DP4=1,3,0,3;MQ=49;PV4=1,0.046,0.065,1 PL:DP:SP:GT:GQ 32,0,82:7:0:0/1:35 +chr10 94267311 . A G 10.2 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr10 94274659 . A G 9.52 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=1,0,4,0;MQ=49;PV4=1,0.0035,0.14,0.014 PL:DP:SP:GT:GQ 39,0,36:5:0:0/1:37 +chr10 94281207 . t tACGTGGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 94294223 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 94301663 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 94366307 . A ATACGGTGAC 5.95 . INDEL;DP=4;AF1=0.5263;CI95=0.5,1;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 42,0,10:2:0:0/1:13 +chr10 94366958 . T A 3.01 . DP=17;AF1=0.4997;CI95=0.5,0.5;DP4=7,3,0,3;MQ=49;PV4=0.07,0.0034,0.051,0.4 PL:DP:SP:GT:GQ 30,0,255:13:12:0/1:33 +chr10 94377523 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 94392513 . AT ATCCGTT 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 94392514 . TAA TAAAAAAA 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 94401196 . g gGGT 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 94417250 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 94423003 . aaatt a 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 94429530 . C T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 94431752 . T G 35 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=42 PL:DP:SP:GT:GQ 67,9,0:3:0:1/1:63 +chr10 94452146 . CCT CCTCT 15.7 . INDEL;DP=11;AF1=0.5129;CI95=0.5,0.5;DP4=1,0,2,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 53,0,13:3:0:0/1:16 +chr10 94452147 . CTT CTTTT,CTCTTT 17.3 . INDEL;DP=11;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 97,47,54,41,0,51:3:0:1/1:49 +chr10 94461200 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 94461209 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 94471005 . tttt tTTTGTCCTCTTAGttt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 94488684 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 94495668 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 94507612 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 94526478 . a aCACTTTT 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 94534901 . tt tTATAAGAt 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 94554131 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 94573680 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 94594565 . G A 73 . DP=53;AF1=0.5;CI95=0.5,0.5;DP4=11,20,5,11;MQ=50;PV4=1,3.2e-22,1.4e-05,0.17 PL:DP:SP:GT:GQ 103,0,255:47:0:0/1:99 +chr10 94599494 . TT TTACAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 94613964 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 94623390 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 94654223 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 94660631 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 94679719 . A C 7.59 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 94688167 . C G 9.52 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=3,0,0,3;MQ=49;PV4=0.1,0.0066,0.25,0.33 PL:DP:SP:GT:GQ 39,0,100:6:10:0/1:42 +chr10 94688797 . T TGGCCCCGG 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=48 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 94695555 . G A 3.01 . DP=11;AF1=0.4997;CI95=0.5,0.5;DP4=4,2,3,0;MQ=49;PV4=0.5,0.00015,0.085,1 PL:DP:SP:GT:GQ 30,0,218:9:3:0/1:33 +chr10 94695617 . C T 61.8 . DP=21;AF1=0.95;CI95=0.5,1;DP4=1,0,1,6;MQ=48;PV4=0.25,0.38,0.24,1 PL:DP:SP:GT:GQ 90,0,0:8:0:1/1:10 +chr10 94696169 . G C 20.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=44 PL:DP:SP:GT:GQ 52,6,0:2:0:1/1:49 +chr10 94700683 . t tAC 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 94712118 . T C 12.3 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=5,1,0,4;MQ=49;PV4=0.048,0.01,0.4,0.15 PL:DP:SP:GT:GQ 42,0,165:10:13:0/1:45 +chr10 94725908 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 94755021 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 94757270 . C T 52 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=4,2,8,0;MQ=48;PV4=0.16,0.085,0.35,0.36 PL:DP:SP:GT:GQ 82,0,121:14:8:0/1:85 +chr10 94764020 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 94773054 . G GTGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 94775970 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 94816807 . GAAA GAAAA 99 . INDEL;DP=22;AF1=1;CI95=1,1;DP4=0,1,0,15;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 159,34,0:16:0:1/1:99 +chr10 94828155 . C A 4.29 . DP=8;AF1=0.5334;CI95=0.5,1;DP4=0,1,0,3;MQ=46;PV4=1,1,0.22,0.01 PL:DP:SP:GT:GQ 32,0,9:4:0:0/1:12 +chr10 94896034 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 94905471 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 94915656 . AAGAAG AAGAAGGACTCCTAGGAGAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 94968734 . TC TCGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 94972295 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 94993147 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 94993158 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 94996844 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 95007326 . G GTGAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 95041876 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 95043763 . G A 91 . DP=10;AF1=1;CI95=1,1;DP4=0,0,10,0;MQ=25 PL:DP:SP:GT:GQ 124,30,0:10:0:1/1:99 +chr10 95044055 . C T 5.46 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=1,1,0,2;MQ=45;PV4=1,0.02,0.18,0.23 PL:DP:SP:GT:GQ 34,0,79:4:0:0/1:37 +chr10 95054809 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 95072906 . T C 34.5 . DP=49;AF1=1;CI95=0.5,1;DP4=0,0,3,1;MQ=49 PL:DP:SP:GT:GQ 67,12,0:4:0:1/1:72 +chr10 95073046 . A G 22 . DP=6;AF1=0.5006;CI95=0.5,0.5;DP4=0,1,0,2;MQ=47;PV4=1,0.44,0.19,0.17 PL:DP:SP:GT:GQ 52,0,26:3:0:0/1:29 +chr10 95089312 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 95089670 . T C 36.3 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=49 PL:DP:SP:GT:GQ 69,15,0:5:0:1/1:75 +chr10 95091494 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 95093048 . T TCTGCATAGGGAG 4.41 . INDEL;DP=44;AF1=1;CI95=1,1;DP4=0,0,13,24;MQ=50 PL:DP:SP:GT:GQ 43,111,0:37:0:1/1:99 +chr10 95094777 . TTC T 3.81 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 95095667 . A G 99 . DP=32;AF1=1;CI95=1,1;DP4=0,0,16,12;MQ=48 PL:DP:SP:GT:GQ 240,84,0:28:0:1/1:99 +chr10 95097537 . T C 9.31 . DP=30;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 95111533 . G T 6.98 . DP=30;AF1=0.4999;CI95=0.5,0.5;DP4=14,1,0,5;MQ=49;PV4=0.00039,0.027,0.0005,1 PL:DP:SP:GT:GQ 36,0,210:20:34:0/1:39 +chr10 95119504 . T G 14.2 . DP=8;AF1=0.5016;CI95=0.5,0.5;DP4=2,0,3,0;MQ=45;PV4=1,1,0.37,1 PL:DP:SP:GT:GQ 44,0,22:5:0:0/1:25 +chr10 95132767 . C T 66 . DP=72;AF1=0.5;CI95=0.5,0.5;DP4=17,21,14,16;MQ=50;PV4=1,5e-34,0.065,1 PL:DP:SP:GT:GQ 96,0,255:68:0:0/1:99 +chr10 95132905 . C T 4.15 . DP=26;AF1=0.503;CI95=0.5,0.5;DP4=0,1,0,2;MQ=47;PV4=1,0.27,0.33,1 PL:DP:SP:GT:GQ 32,0,19:3:0:0/1:22 +chr10 95148925 . AT ATAGT 3.25 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.22 PL:DP:SP:GT:GQ 38,0,91:4:0:0/1:41 +chr10 95155962 . C A 7.8 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=1,5,0,3;MQ=48;PV4=1,0.12,0.039,1 PL:DP:SP:GT:GQ 37,0,145:9:0:0/1:40 +chr10 95162113 . G C 69 . DP=27;AF1=1;CI95=1,1;DP4=0,0,0,23;MQ=49 PL:DP:SP:GT:GQ 102,69,0:23:0:1/1:99 +chr10 95164040 . A G 33.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=44 PL:DP:SP:GT:GQ 65,6,0:2:0:1/1:49 +chr10 95168634 . A G 99 . DP=60;AF1=1;CI95=1,1;DP4=1,0,24,21;MQ=44;PV4=1,1,0.00065,1 PL:DP:SP:GT:GQ 255,107,0:46:0:1/1:99 +chr10 95168735 . C G 99 . DP=30;AF1=1;CI95=1,1;DP4=0,1,1,25;MQ=47;PV4=1,0.0044,0.12,1 PL:DP:SP:GT:GQ 168,35,0:27:0:1/1:99 +chr10 95173952 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 95212154 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 95218795 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 95222587 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 95241999 . A C 99 . DP=31;AF1=1;CI95=1,1;DP4=0,0,0,26;MQ=46 PL:DP:SP:GT:GQ 164,78,0:26:0:1/1:99 +chr10 95250095 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 95259979 . C G 99 . DP=25;AF1=1;CI95=1,1;DP4=0,1,3,21;MQ=49;PV4=1,0.071,0.36,1 PL:DP:SP:GT:GQ 134,51,0:25:0:1/1:99 +chr10 95262981 . A G 99 . DP=38;AF1=1;CI95=1,1;DP4=0,0,22,9;MQ=50 PL:DP:SP:GT:GQ 161,93,0:31:0:1/1:99 +chr10 95263184 . TT TTGT 6.1 . INDEL;DP=11;AF1=0.5554;CI95=0.5,1;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 42,0,7:2:0:0/1:10 +chr10 95279653 . A G 28.3 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=50 PL:DP:SP:GT:GQ 61,15,0:5:0:1/1:75 +chr10 95321189 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 95354451 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 95362027 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 95367221 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 95367341 . gaggt g 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 95389143 . AGT AGTGT 12.7 . INDEL;DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 95395243 . AT ATT 3.25 . INDEL;DP=8;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 95395247 . A G 99 . DP=7;AF1=0.5207;CI95=0.5,1;DP4=1,0,3,1;MQ=44;PV4=1,1,0,1 PL:DP:SP:GT:GQ 136,0,11:5:0:0/1:14 +chr10 95400054 . C G 72 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,11;MQ=48;PV4=1,3.2e-05,0.0029,1 PL:DP:SP:GT:GQ 102,0,161:18:0:0/1:99 +chr10 95400641 . AA AACGTA 7.35 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 95400773 . T G 47 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,7;MQ=48;PV4=0.22,0.047,0.064,1 PL:DP:SP:GT:GQ 77,0,43:9:0:0/1:46 +chr10 95405665 . CTAT CT 79.5 . INDEL;DP=18;AF1=0.5;CI95=0.5,0.5;DP4=13,0,5,0;MQ=50;PV4=1,3.1e-12,1,1 PL:DP:SP:GT:GQ 117,0,232:18:0:0/1:99 +chr10 95406809 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 95410877 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 95412914 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 95412921 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 95422303 . A C 3.54 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,1,0;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,44:2:0:0/1:34 +chr10 95457992 . A G 76 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=3,1,2,5;MQ=49;PV4=0.24,1.2e-06,0.057,1 PL:DP:SP:GT:GQ 106,0,145:11:6:0/1:99 +chr10 95458141 . A G 99 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=0,16,2,8;MQ=48;PV4=0.14,2e-05,1.2e-10,0.085 PL:DP:SP:GT:GQ 176,0,238:26:9:0/1:99 +chr10 95459817 . C T 99 . DP=14;AF1=1;CI95=1,1;DP4=0,0,10,2;MQ=49 PL:DP:SP:GT:GQ 140,36,0:12:0:1/1:99 +chr10 95463047 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 95518588 . T A 3.01 . DP=10;AF1=0.4997;CI95=0.5,0.5;DP4=3,1,0,3;MQ=50;PV4=0.14,0.032,0.14,1 PL:DP:SP:GT:GQ 30,0,125:7:8:0/1:33 +chr10 95522747 . G T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 95549967 . T G 8.93 . DP=13;AF1=0.543;CI95=0.5,1;DP4=0,1,0,4;MQ=47;PV4=1,0.46,0.13,1 PL:DP:SP:GT:GQ 38,0,8:5:0:0/1:11 +chr10 95552455 . G T 18.1 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=10,0,5,0;MQ=49;PV4=1,0.11,0.0028,1 PL:DP:SP:GT:GQ 48,0,122:15:0:0/1:51 +chr10 95557587 . G GCTGCTGC 7.35 . INDEL;DP=9;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 95557592 . TTT TTTACGTT 7.35 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 95557593 . T G 32.5 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=48 PL:DP:SP:GT:GQ 65,12,0:4:0:1/1:72 +chr10 95608426 . aa aAGCa 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 95616624 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 95630944 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 95641536 . A C 34 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=47 PL:DP:SP:GT:GQ 66,9,0:3:0:1/1:63 +chr10 95647093 . G C 3.58 . DP=2;AF1=0.5078;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,15:2:0:0/1:18 +chr10 95658258 . C G 13.2 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=5,0,2,0;MQ=48;PV4=1,0.038,0.00048,1 PL:DP:SP:GT:GQ 43,0,153:7:0:0/1:46 +chr10 95674257 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 95683119 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 95684557 . gaga g 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 95720111 . CC CCTC 7.37 . INDEL;DP=3;AF1=0.5025;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,20:2:0:0/1:23 +chr10 95745885 . A AAGGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 95747506 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 95761511 . T TGGTGGACGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 95835015 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 95871120 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 95875602 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 95897615 . C A 5.46 . DP=3;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,1;MQ=48;PV4=1,0.23,0,1 PL:DP:SP:GT:GQ 34,0,83:3:0:0/1:37 +chr10 95936532 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 95938282 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 95982598 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 96010426 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 96013688 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 96013769 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 96022349 . G A 22 . DP=59;AF1=0.5;CI95=0.5,0.5;DP4=36,9,0,11;MQ=49;PV4=1.1e-06,8.7e-05,3.4e-10,0.48 PL:DP:SP:GT:GQ 52,0,255:56:59:0/1:55 +chr10 96028754 . T G 18.1 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=13,3,0,6;MQ=49;PV4=0.0011,0.0012,0.036,0.33 PL:DP:SP:GT:GQ 48,0,255:22:29:0/1:51 +chr10 96037450 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 96044579 . A C 6.2 . DP=14;AF1=0.4999;CI95=0.5,0.5;DP4=2,3,3,0;MQ=48;PV4=0.2,0.026,0.24,1 PL:DP:SP:GT:GQ 35,0,144:8:7:0/1:38 +chr10 96052990 . C G 8.65 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 96068581 . ata aTACAAGTGta 5.08 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=49;PV4=1,1,1,0.072 PL:DP:SP:GT:GQ 41,0,65:3:0:0/1:44 +chr10 96073608 . G GCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 96084676 . A G 3.01 . DP=9;AF1=0.4997;CI95=0.5,0.5;DP4=3,0,0,2;MQ=48;PV4=0.1,0.022,0.039,0.25 PL:DP:SP:GT:GQ 30,0,70:5:10:0/1:33 +chr10 96087832 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 96097991 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 96100314 . A C 8.65 . DP=12;AF1=0.5006;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.23,0.27,1 PL:DP:SP:GT:GQ 38,0,26:3:0:0/1:29 +chr10 96104665 . T G 99 . DP=25;AF1=1;CI95=1,1;DP4=1,0,6,16;MQ=49;PV4=0.3,3.4e-07,0.33,0.27 PL:DP:SP:GT:GQ 149,19,0:23:0:1/1:76 +chr10 96114835 . G A 99 . DP=24;AF1=1;CI95=1,1;DP4=0,0,6,5;MQ=49 PL:DP:SP:GT:GQ 148,33,0:11:0:1/1:99 +chr10 96117892 . T G 16.1 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=10,1,0,5;MQ=49;PV4=0.0014,0.00087,0.0039,0.31 PL:DP:SP:GT:GQ 46,0,225:16:29:0/1:49 +chr10 96133925 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 96138386 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 96149254 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 96191906 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 96194532 . tgtg tGTGGgtg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 96198394 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 96212760 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 96237287 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 96252948 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 96271298 . A C 65 . DP=25;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=49 PL:DP:SP:GT:GQ 98,27,0:9:0:1/1:99 +chr10 96290906 . A C 13 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr10 96313960 . A C 22.5 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=49 PL:DP:SP:GT:GQ 55,12,0:4:0:1/1:72 +chr10 96313974 . T C 5.29 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr10 96321247 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 96322546 . A G 8.44 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr10 96334978 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 96336654 . A AGCT 3.25 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,93:4:0:0/1:41 +chr10 96337974 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 96341336 . A C 7.59 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 96356569 . gt gTTt 12.7 . INDEL;DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 96372493 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 96390943 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 96426296 . A C 10.4 . DP=5;AF1=0.9999;CI95=0.5,1;DP4=1,0,0,2;MQ=38;PV4=0.33,0.057,1,0.18 PL:DP:SP:GT:GQ 40,3,0:3:0:1/1:41 +chr10 96448278 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 96454636 . T A 3.98 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 33,6,0:2:0:1/1:49 +chr10 96493058 . C T 99 . DP=22;AF1=1;CI95=1,1;DP4=1,0,12,2;MQ=45;PV4=1,1,0.019,1 PL:DP:SP:GT:GQ 227,29,0:15:0:1/1:99 +chr10 96495284 . G A 75.3 . DP=15;AF1=0.543;CI95=0.5,1;DP4=0,1,0,13;MQ=48;PV4=1,0.00016,0.23,1 PL:DP:SP:GT:GQ 105,0,8:14:0:0/1:11 +chr10 96541616 . G A 8.44 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr10 96580202 . C G 99 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=43 PL:DP:SP:GT:GQ 138,15,0:5:0:1/1:75 +chr10 96587409 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 96609865 . T G 3.41 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 32,6,0:2:0:1/1:49 +chr10 96611150 . a aAC 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 96665860 . T A 4.77 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,37:2:0:0/1:35 +chr10 96698809 . G C 13 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=41 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr10 96749262 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 96757278 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 96769513 . G C 5.46 . DP=8;AF1=0.4999;CI95=0.5,0.5;DP4=5,1,2,0;MQ=49;PV4=1,0.036,0.00012,0.14 PL:DP:SP:GT:GQ 34,0,183:8:0:0/1:37 +chr10 96796861 . G A 6.79 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr10 96798548 . C T 22 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 54,9,0:3:0:1/1:63 +chr10 96798685 . C A 6.24 . DP=2;AF1=0.5063;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 35,0,16:2:0:0/1:19 +chr10 96827118 . AT ATT 89.1 . INDEL;DP=18;AF1=0.5939;CI95=0.5,1;DP4=0,2,0,14;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 126,0,5:16:0:0/1:7 +chr10 96827119 . TAAAAAAA TAAAAAAAA 6.63 . INDEL;DP=17;AF1=1;CI95=1,1;DP4=0,2,0,14;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 46,19,0:16:0:1/1:76 +chr10 96827178 . T C 54.1 . DP=21;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=47 PL:DP:SP:GT:GQ 87,18,0:6:0:1/1:90 +chr10 96827490 . TT TTACT 12.7 . INDEL;DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 96856341 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 96859006 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 96870188 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 96871571 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 96887940 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 96893305 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 96904403 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 96931227 . A AAG 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=48;PV4=1,1,1,0.076 PL:DP:SP:GT:GQ 38,0,108:4:0:0/1:41 +chr10 96945206 . AAA AAATAA 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 96963832 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 96965299 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 96985661 . c cTTTAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 97005819 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 97012343 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 97053784 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 97058864 . aaga aAGATGACTAGaga 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 97080060 . T TCTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 97090997 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 97096639 . A T 37 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=1,13,8,0;MQ=48;PV4=2.8e-05,0.00047,0.0066,1 PL:DP:SP:GT:GQ 67,0,237:22:46:0/1:70 +chr10 97106946 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 97121904 . CTGGAAGA C 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 97127462 . C A 17.1 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 49,9,0:3:0:1/1:63 +chr10 97141253 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 97141523 . G A 99 . DP=36;AF1=1;CI95=1,1;DP4=0,0,6,26;MQ=49 PL:DP:SP:GT:GQ 235,96,0:32:0:1/1:99 +chr10 97156908 . T C 25 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=3,1,5,0;MQ=49;PV4=0.44,2.2e-07,0,1 PL:DP:SP:GT:GQ 55,0,151:9:0:0/1:58 +chr10 97160022 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 97165811 . G A 24.1 . DP=16;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=50 PL:DP:SP:GT:GQ 57,18,0:6:0:1/1:90 +chr10 97175445 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 97197395 . G T 17.1 . DP=9;AF1=0.5032;CI95=0.5,0.5;DP4=0,1,0,3;MQ=48;PV4=1,0.037,1,1 PL:DP:SP:GT:GQ 47,0,19:4:0:0/1:22 +chr10 97199992 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 97228343 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 97230189 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 97232604 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 97242781 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 97251429 . aag aAGTGAAGag 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 97270387 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 97294590 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 97327823 . CC CCTC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 97338929 . tca t 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 97354914 . C T 75 . DP=16;AF1=1;CI95=1,1;DP4=1,0,3,9;MQ=19;PV4=0.31,1,1,1 PL:DP:SP:GT:GQ 108,28,0:13:0:1/1:99 +chr10 97361602 . T TCCC 8.19 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 97372277 . A AGTTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 97372972 . tt tTGCAAt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 97403571 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 97405584 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 97411445 . C G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 97440328 . G A 19.1 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,3;MQ=48;PV4=1,0.4,0.0097,1 PL:DP:SP:GT:GQ 49,0,61:6:0:0/1:52 +chr10 97447373 . A T 59 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=1,12,1,8;MQ=49;PV4=1,6.8e-05,0.022,1 PL:DP:SP:GT:GQ 89,0,234:22:0:0/1:92 +chr10 97455562 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 97483580 . g gCGAAAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 97518862 . TA TAGGGCGA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 97521769 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 97580336 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 97605057 . C G 99 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=15,1,14,0;MQ=47;PV4=1,9.9e-10,0,1 PL:DP:SP:GT:GQ 188,0,255:30:0:0/1:99 +chr10 97606304 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 97606368 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 97607165 . G A 75 . DP=40;AF1=0.5;CI95=0.5,0.5;DP4=18,4,14,0;MQ=48;PV4=0.14,5.4e-08,2.1e-07,0.35 PL:DP:SP:GT:GQ 105,0,255:36:9:0/1:99 +chr10 97616787 . T TAG 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 97648686 . G T 3.55 . DP=2;AF1=0.5011;CI95=0.5,0.5;DP4=0,1,1,0;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,23:2:0:0/1:25 +chr10 97664356 . A ACCGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 97666753 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 97675527 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 97688261 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 97698958 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 97705988 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 97716709 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 97721664 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 97734151 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 97772253 . C T 24.3 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=50 PL:DP:SP:GT:GQ 57,15,0:5:0:1/1:75 +chr10 97800138 . GG GGGTGCGGGCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 97816749 . C G 8.64 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=9,5,0,4;MQ=49;PV4=0.082,0.11,0.003,1 PL:DP:SP:GT:GQ 38,0,255:18:11:0/1:41 +chr10 97833026 . t tACACACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 97851271 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 97891376 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 97913083 . T A 4.13 . DP=2;AF1=0.5006;CI95=0.5,0.5;DP4=0,1,0,1;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,25:2:0:0/1:27 +chr10 97964261 . C G 65 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=7,0,5,0;MQ=48;PV4=1,0.26,1.4e-05,0.052 PL:DP:SP:GT:GQ 95,0,145:12:0:0/1:98 +chr10 97968020 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 97975189 . A G,C 17.1 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=46 PL:DP:SP:GT:GQ 50,10,45,1,0,45:4:0:1/1:63 +chr10 97975189 . a aGCAGGTAT 7.49 . INDEL;DP=7;AF1=0.5207;CI95=0.5,1;DP4=0,1,0,1;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,11:2:0:0/1:14 +chr10 97987378 . G A 99 . DP=40;AF1=0.5;CI95=0.5,0.5;DP4=0,13,0,23;MQ=46;PV4=1,0.013,2e-13,1 PL:DP:SP:GT:GQ 200,0,201:36:0:0/1:99 +chr10 97991511 . T G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 97996679 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 98006798 . G C 14.2 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=1,4,2,1;MQ=47;PV4=0.46,7e-05,0.014,0.015 PL:DP:SP:GT:GQ 44,0,182:8:3:0/1:47 +chr10 98010335 . A AAGGTTCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 98037903 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 98080363 . T C 15.1 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=4,2,5,0;MQ=48;PV4=0.45,0.066,0.11,1 PL:DP:SP:GT:GQ 45,0,147:11:3:0/1:48 +chr10 98082385 . A G 27 . DP=9;AF1=0.5032;CI95=0.5,0.5;DP4=1,0,4,0;MQ=48;PV4=1,0.0099,0.063,0.38 PL:DP:SP:GT:GQ 57,0,19:5:0:0/1:22 +chr10 98084231 . A G 34.5 . DP=28;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=48 PL:DP:SP:GT:GQ 67,12,0:4:0:1/1:72 +chr10 98092426 . G A 9.52 . DP=26;AF1=0.5003;CI95=0.5,0.5;DP4=0,1,0,3;MQ=49;PV4=1,0.0045,0.28,1 PL:DP:SP:GT:GQ 39,0,29:4:0:0/1:32 +chr10 98092427 . G A 38 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,7;MQ=48;PV4=1,0.069,0.023,1 PL:DP:SP:GT:GQ 68,0,127:15:0:0/1:71 +chr10 98095615 . G C 18.1 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=4,0,4,0;MQ=49;PV4=1,0.12,0.12,0.29 PL:DP:SP:GT:GQ 48,0,76:8:0:0/1:51 +chr10 98095794 . T C 7.77 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 39,9,0:3:0:1/1:63 +chr10 98097171 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 98135125 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 98144312 . G A 99 . DP=42;AF1=1;CI95=1,1;DP4=0,0,36,0;MQ=49 PL:DP:SP:GT:GQ 150,108,0:36:0:1/1:99 +chr10 98154958 . G T 11.3 . DP=39;AF1=0.5;CI95=0.5,0.5;DP4=9,9,6,0;MQ=49;PV4=0.052,0.0016,0.00024,1 PL:DP:SP:GT:GQ 41,0,255:24:13:0/1:44 +chr10 98206310 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 98224897 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 98225862 . C CCTCT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 98225867 . A T 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 98231732 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 98236670 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 98240035 . A T 88 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=8,0,5,0;MQ=47;PV4=1,0.0013,3.6e-06,1 PL:DP:SP:GT:GQ 118,0,198:13:0:0/1:99 +chr10 98244084 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 98281981 . A C 32.1 . DP=14;AF1=0.5129;CI95=0.5,0.5;DP4=2,0,5,0;MQ=48;PV4=1,1,0.044,1 PL:DP:SP:GT:GQ 62,0,13:7:0:0/1:16 +chr10 98320615 . C CGA 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,0.012 PL:DP:SP:GT:GQ 38,0,93:4:0:0/1:41 +chr10 98345779 . AA AAAGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 98356496 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 98359367 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 98371919 . cc cCGTc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 98380115 . G C 8.64 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=4,4,4,0;MQ=48;PV4=0.21,0.11,0.11,0.38 PL:DP:SP:GT:GQ 38,0,174:12:7:0/1:41 +chr10 98380277 . C T 76.1 . DP=30;AF1=0.505;CI95=0.5,0.5;DP4=1,0,3,6;MQ=49;PV4=0.4,0.00077,0.27,1 PL:DP:SP:GT:GQ 106,0,17:10:0:0/1:20 +chr10 98380363 . A G 38.3 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=49 PL:DP:SP:GT:GQ 71,15,0:5:0:1/1:75 +chr10 98386558 . G A 53 . DP=41;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,5;MQ=50;PV4=0.17,0.061,0.18,1 PL:DP:SP:GT:GQ 83,0,37:9:8:0/1:40 +chr10 98410901 . A G 49.5 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=45 PL:DP:SP:GT:GQ 82,12,0:4:0:1/1:72 +chr10 98410947 . A C 49 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=3,0,7,0;MQ=46;PV4=1,0.32,0.072,1 PL:DP:SP:GT:GQ 79,0,38:10:0:0/1:41 +chr10 98419329 . TCT TCTGTAGACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 98423884 . aa aATTTTCa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 98442012 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 98442273 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 98452503 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 98452511 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 98453195 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 98460693 . GT GTCAGTACTGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 98469507 . C A 29 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,2;MQ=47;PV4=1,0.00056,0.17,1 PL:DP:SP:GT:GQ 59,0,85:5:0:0/1:62 +chr10 98513256 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 98529679 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 98557950 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 98593737 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 98594084 . AT ATCTCTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 98609602 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 98611876 . a aCAAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 98646713 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 98668862 . CA CATA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 98675571 . A C 20 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=3,1,1,2;MQ=47;PV4=0.49,0.06,0.097,1 PL:DP:SP:GT:GQ 50,0,124:7:3:0/1:53 +chr10 98679069 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 98682130 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 98711894 . A C 4.77 . DP=43;AF1=0.4999;CI95=0.5,0.5;DP4=4,18,6,0;MQ=49;PV4=0.00056,2.4e-05,1.5e-06,1 PL:DP:SP:GT:GQ 33,0,255:28:33:0/1:36 +chr10 98737843 . G A 4.77 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,0,1;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,38:2:0:0/1:35 +chr10 98742750 . A C 27.1 . DP=30;AF1=0.508;CI95=0.5,0.5;DP4=0,1,1,3;MQ=49;PV4=1,0.13,0.3,1 PL:DP:SP:GT:GQ 57,0,15:5:0:0/1:18 +chr10 98743301 . A G 34 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=2,2,0,9;MQ=48;PV4=0.077,0.00025,0.38,1 PL:DP:SP:GT:GQ 64,0,101:13:11:0/1:67 +chr10 98764694 . G T 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 98780933 . T C 93.5 . DP=12;AF1=1;CI95=0.5,1;DP4=0,1,10,0;MQ=46;PV4=0.091,1,1,1 PL:DP:SP:GT:GQ 125,7,0:11:0:1/1:57 +chr10 98788847 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 98794189 . G C 7.59 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 98794191 . C T 6.02 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr10 98794644 . T A 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 98808866 . C G 11.1 . DP=20;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=48 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 +chr10 98814424 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 98819317 . A G 99 . DP=16;AF1=0.6243;CI95=0.5,1;DP4=0,2,0,9;MQ=46;PV4=1,1,0.0058,1 PL:DP:SP:GT:GQ 141,0,4:11:0:0/1:6 +chr10 98837001 . g gAGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 98863470 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 98865178 . C T 3.02 . DP=2;AF1=0.5001;CI95=0.5,0.5;DP4=0,1,1,0;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,28:2:0:0/1:29 +chr10 98866135 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 98872508 . g gCCTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 98886317 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 98896268 . TC TCTGTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 98897003 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 98900167 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 98905420 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 98914332 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 98923300 . G A 12.3 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 98932906 . A ACAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 98934463 . T C 3.54 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,32:2:0:0/1:31 +chr10 98947740 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 98948423 . ATGTGCTG A 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 98952971 . a aGT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 98966768 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 98985801 . CTTT CTTTTT 7.35 . INDEL;DP=3;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,32:2:0:0/1:35 +chr10 98987700 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 98987712 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 98989454 . A G 30.1 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=49 PL:DP:SP:GT:GQ 63,18,0:6:0:1/1:90 +chr10 99003613 . A C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 99003731 . A C 6.98 . DP=20;AF1=0.4999;CI95=0.5,0.5;DP4=2,3,4,0;MQ=49;PV4=0.17,0.0099,0.13,0.46 PL:DP:SP:GT:GQ 36,0,151:9:8:0/1:39 +chr10 99019177 . A G 99 . DP=38;AF1=1;CI95=1,1;DP4=0,1,17,11;MQ=47;PV4=0.41,0.24,0.18,1 PL:DP:SP:GT:GQ 255,57,0:29:0:1/1:99 +chr10 99033689 . tcacaa t 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 99069493 . G T 13.2 . DP=16;AF1=0.5001;CI95=0.5,0.5;DP4=2,0,1,5;MQ=26;PV4=0.11,0.00019,0.3,0.16 PL:DP:SP:GT:GQ 43,0,32:8:10:0/1:35 +chr10 99111009 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 99117010 . T G 3.01 . DP=8;AF1=0.4998;CI95=0.5,0.5;DP4=0,2,0,2;MQ=48;PV4=1,0.26,0,1 PL:DP:SP:GT:GQ 30,0,51:4:0:0/1:33 +chr10 99124699 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 99125949 . C T 11.1 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=48 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 +chr10 99126974 . A G 6.2 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 99129985 . G A 9.52 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,2;MQ=48;PV4=1,1,0.029,1 PL:DP:SP:GT:GQ 39,0,43:4:0:0/1:41 +chr10 99130754 . CGA CGATCAGA 3.25 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=1,2,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,130:4:0:0/1:41 +chr10 99143125 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 99151046 . T TTGCCGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 99160965 . A G 3.01 . DP=55;AF1=0.4998;CI95=0.5,0.5;DP4=1,1,0,3;MQ=50;PV4=0.4,0.044,0.25,1 PL:DP:SP:GT:GQ 30,0,34:5:0:0/1:32 +chr10 99184823 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 99184877 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 99196210 . G C 3.54 . DP=19;AF1=0.4998;CI95=0.5,0.5;DP4=3,6,3,0;MQ=49;PV4=0.18,0.13,0.0069,0.048 PL:DP:SP:GT:GQ 31,0,211:12:7:0/1:34 +chr10 99196251 . T G 21 . DP=48;AF1=0.5;CI95=0.5,0.5;DP4=20,2,0,10;MQ=49;PV4=1e-06,4.3e-08,0.00063,0.016 PL:DP:SP:GT:GQ 51,0,255:32:60:0/1:54 +chr10 99199272 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 99199276 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 99205686 . A G 49.3 . DP=29;AF1=0.5336;CI95=0.5,1;DP4=1,0,3,3;MQ=49;PV4=1,0.02,0.46,0.28 PL:DP:SP:GT:GQ 79,0,9:7:0:0/1:12 +chr10 99214609 . T G 4.13 . DP=21;AF1=0.4998;CI95=0.5,0.5;DP4=0,7,0,4;MQ=49;PV4=1,0.11,0.013,1 PL:DP:SP:GT:GQ 32,0,141:11:0:0/1:35 +chr10 99235990 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 99274472 . G GTGGGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 99283518 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 99309002 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 99337572 . G A 62.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=45 PL:DP:SP:GT:GQ 95,12,0:4:0:1/1:72 +chr10 99338872 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 99340531 . A AAG 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 99344668 . C A 18.1 . DP=10;AF1=0.5016;CI95=0.5,0.5;DP4=1,1,0,3;MQ=48;PV4=0.4,1,1,0.39 PL:DP:SP:GT:GQ 48,0,22:5:0:0/1:25 +chr10 99350340 . T C 39 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=3,12,0,8;MQ=49;PV4=0.53,0.015,2.4e-05,1 PL:DP:SP:GT:GQ 69,0,255:23:3:0/1:72 +chr10 99376675 . A G 6.2 . DP=3;AF1=0.5003;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.26,0.33,0.45 PL:DP:SP:GT:GQ 35,0,28:3:0:0/1:30 +chr10 99379321 . T C 28 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=7,1,7,0;MQ=50;PV4=1,4.9e-08,0.11,1 PL:DP:SP:GT:GQ 58,0,220:15:0:0/1:61 +chr10 99407770 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 99407773 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 99413904 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 99422565 . T C 3.01 . DP=4;AF1=0.4997;CI95=0.5,0.5;DP4=3,0,1,0;MQ=48;PV4=1,0,0,1 PL:DP:SP:GT:GQ 30,0,114:4:0:0/1:33 +chr10 99422648 . A G 19.1 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=9,0,8,0;MQ=50;PV4=1,4.3e-11,0.15,0.47 PL:DP:SP:GT:GQ 49,0,204:17:0:0/1:52 +chr10 99433297 . C T 67 . DP=24;AF1=1;CI95=1,1;DP4=1,0,14,0;MQ=49;PV4=1,1,0.28,1 PL:DP:SP:GT:GQ 100,27,0:15:0:1/1:99 +chr10 99437005 . AT ATGCTCAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 99439541 . G C 6.02 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr10 99507810 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 99551996 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 99566797 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 99575080 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 99619094 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 99633104 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 99639929 . A T 4.13 . DP=27;AF1=0.4998;CI95=0.5,0.5;DP4=10,0,3,0;MQ=49;PV4=1,0.4,0.00026,1 PL:DP:SP:GT:GQ 32,0,129:13:0:0/1:35 +chr10 99658617 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 99663112 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 99681626 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 99682981 . T C 59 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=11,5,11,0;MQ=49;PV4=0.06,1.2e-06,0.0071,1 PL:DP:SP:GT:GQ 89,0,255:27:12:0/1:92 +chr10 99683281 . G GCA 3.25 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.33 PL:DP:SP:GT:GQ 38,0,107:4:0:0/1:41 +chr10 99688992 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 99697509 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 99701474 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 99701986 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 99725773 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 99740450 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 99753457 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 99788728 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 99809014 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 99823789 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 99835102 . tc tCTGc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 99848203 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 99853192 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 99858009 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 99866853 . A ACAGGTGCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 99874344 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 99886732 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 99935126 . G C 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 99969568 . A G 11.3 . DP=72;AF1=0.5;CI95=0.5,0.5;DP4=20,23,8,10;MQ=50;PV4=1,1.1e-21,0.062,1 PL:DP:SP:GT:GQ 41,0,255:61:0:0/1:44 +chr10 99991408 . A G 99 . DP=43;AF1=1;CI95=1,1;DP4=1,1,11,25;MQ=46;PV4=0.54,1,0.052,1 PL:DP:SP:GT:GQ 255,66,0:38:3:1/1:99 +chr10 100003785 . T C 22 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=9,0,4,0;MQ=49;PV4=1,0.037,2.9e-05,0.37 PL:DP:SP:GT:GQ 52,0,185:13:0:0/1:55 +chr10 100012161 . C A 5.46 . DP=18;AF1=0.4999;CI95=0.5,0.5;DP4=7,2,0,3;MQ=49;PV4=0.045,0.032,0.0076,0.29 PL:DP:SP:GT:GQ 34,0,221:12:13:0/1:37 +chr10 100013244 . A C 10.4 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=7,0,4,0;MQ=49;PV4=1,0.0054,0.22,1 PL:DP:SP:GT:GQ 40,0,161:11:0:0/1:43 +chr10 100016608 . T G 10.4 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=6,3,0,4;MQ=49;PV4=0.07,0.028,0.011,1 PL:DP:SP:GT:GQ 40,0,218:13:12:0/1:43 +chr10 100017453 . T G 99 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=5,8,1,15;MQ=47;PV4=0.064,0.0009,4.6e-08,1 PL:DP:SP:GT:GQ 187,0,255:29:12:0/1:99 +chr10 100021548 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 100079153 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 100082945 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 100104215 . AAG AAGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 100104508 . T A 4.13 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,44:2:0:0/1:35 +chr10 100144782 . C T 58 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=3,4,2,3;MQ=48;PV4=1,7.6e-06,0.00049,0.27 PL:DP:SP:GT:GQ 88,0,248:12:0:0/1:91 +chr10 100146895 . T C 37 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=5,0,4,0;MQ=48;PV4=1,0.0012,0.0087,1 PL:DP:SP:GT:GQ 67,0,150:9:0:0/1:70 +chr10 100147097 . G A 24 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=0,9,0,5;MQ=50;PV4=1,8.6e-09,0.095,1 PL:DP:SP:GT:GQ 54,0,210:14:0:0/1:57 +chr10 100148176 . A G 99 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=3,10,3,14;MQ=49;PV4=1,3.3e-08,0.007,1 PL:DP:SP:GT:GQ 149,0,255:30:0:0/1:99 +chr10 100148260 . A T 27 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=1,6,0,4;MQ=47;PV4=1,0.093,0.0021,0.31 PL:DP:SP:GT:GQ 57,0,166:11:0:0/1:60 +chr10 100155110 . C G 3.54 . DP=29;AF1=0.4998;CI95=0.5,0.5;DP4=1,5,0,4;MQ=48;PV4=1,0.2,0.36,1 PL:DP:SP:GT:GQ 31,0,110:10:0:0/1:34 +chr10 100157338 . CA C 23.5 . INDEL;DP=18;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,4;MQ=50;PV4=1,0.12,1,1 PL:DP:SP:GT:GQ 61,0,143:12:0:0/1:64 +chr10 100167396 . G A 21 . DP=44;AF1=0.5;CI95=0.5,0.5;DP4=11,14,1,11;MQ=50;PV4=0.058,1.9e-10,0.013,1 PL:DP:SP:GT:GQ 51,0,255:37:12:0/1:54 +chr10 100167495 . G A 67 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=43 PL:DP:SP:GT:GQ 99,9,0:3:0:1/1:63 +chr10 100174989 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 100183774 . A G 60.3 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=47 PL:DP:SP:GT:GQ 93,15,0:5:0:1/1:75 +chr10 100219314 . G A 64 . DP=48;AF1=0.5;CI95=0.5,0.5;DP4=23,11,11,1;MQ=49;PV4=0.14,1.1e-15,9.2e-14,1 PL:DP:SP:GT:GQ 94,0,255:46:9:0/1:97 +chr10 100229641 . A T 4.78 . DP=2;AF1=0.5024;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,20:2:0:0/1:23 +chr10 100229670 . T TAGGCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 100230852 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 100240022 . gt gTCCt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 100242345 . C G 73.1 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=47 PL:DP:SP:GT:GQ 106,18,0:6:0:1/1:90 +chr10 100247095 . a aTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 100251773 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 100253111 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 100256205 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 100362640 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 100369978 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 100381435 . g gTTGTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 100401745 . T C 23 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 55,9,0:3:0:1/1:63 +chr10 100509743 . aa aAGTa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 100588369 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 100591101 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 100646329 . TTAGGA T 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 100664376 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 100712131 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 100717785 . TT TTTGACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 100758893 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 100759839 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 100772697 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 100778378 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 100783033 . gg gGTCACTg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 100792555 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 100841248 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 100856730 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 100885875 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 100894428 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 100919857 . c cTCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 100973556 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 101064822 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 101080045 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 101080355 . C A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 101166544 . C T 42 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=11,8,8,2;MQ=49;PV4=0.41,4e-07,0.13,1 PL:DP:SP:GT:GQ 72,0,255:29:4:0/1:75 +chr10 101209215 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 101220557 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 101224448 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 101230320 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 101234941 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 101240253 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 101282474 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 101291087 . C CGGGGGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 101297382 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 101329142 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 101330035 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 101330039 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 101333169 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 101338795 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 101351097 . TG TGGGGCAGGGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 101372411 . T C 73.1 . DP=20;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=47 PL:DP:SP:GT:GQ 106,21,0:7:0:1/1:84 +chr10 101372427 . A G 7.8 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,3;MQ=47;PV4=1,1,0.0043,1 PL:DP:SP:GT:GQ 37,0,57:8:0:0/1:40 +chr10 101379845 . C A 4.77 . DP=11;AF1=0.4999;CI95=0.5,0.5;DP4=1,4,0,3;MQ=48;PV4=1,0.22,0.27,1 PL:DP:SP:GT:GQ 33,0,102:8:0:0/1:36 +chr10 101379895 . C T 5.46 . DP=3;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,1;MQ=47;PV4=1,0.44,0.042,1 PL:DP:SP:GT:GQ 34,0,74:3:0:0/1:37 +chr10 101451259 . T C 23 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=2,4,0,5;MQ=48;PV4=0.45,0.022,0.17,0.37 PL:DP:SP:GT:GQ 53,0,143:11:3:0/1:56 +chr10 101457155 . A G 6.2 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 35,0,43:2:0:0/1:37 +chr10 101466569 . C G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 101474499 . T C 3.01 . DP=17;AF1=0.4997;CI95=0.5,0.5;DP4=2,9,0,4;MQ=50;PV4=1,4.6e-05,3.4e-07,0.49 PL:DP:SP:GT:GQ 30,0,255:15:0:0/1:33 +chr10 101478000 . TCC TCCC 65 . INDEL;DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=50 PL:DP:SP:GT:GQ 105,12,0:4:0:1/1:72 +chr10 101485984 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 101495027 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 101525391 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 101542955 . A AATTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 101543159 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 101544447 . A T 93 . DP=69;AF1=1;CI95=1,1;DP4=0,0,11,1;MQ=48 PL:DP:SP:GT:GQ 126,36,0:12:0:1/1:99 +chr10 101553058 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 101553743 . A C 10.4 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=0,9,0,5;MQ=49;PV4=1,0.11,0.23,1 PL:DP:SP:GT:GQ 40,0,97:14:0:0/1:43 +chr10 101557046 . C G 6.98 . DP=10;AF1=0.4999;CI95=0.5,0.5;DP4=2,1,1,2;MQ=47;PV4=1,0.17,1,0.1 PL:DP:SP:GT:GQ 36,0,57:6:0:0/1:39 +chr10 101589897 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 101591944 . T C 98 . DP=13;AF1=1;CI95=1,1;DP4=0,0,0,12;MQ=48 PL:DP:SP:GT:GQ 131,36,0:12:0:1/1:99 +chr10 101595816 . G T 5.46 . DP=31;AF1=0.4999;CI95=0.5,0.5;DP4=10,0,5,0;MQ=50;PV4=1,0.084,9.3e-05,1 PL:DP:SP:GT:GQ 34,0,102:15:0:0/1:37 +chr10 101596043 . A C 37 . DP=44;AF1=0.5;CI95=0.5,0.5;DP4=6,9,0,11;MQ=49;PV4=0.024,0.0029,0.0014,1 PL:DP:SP:GT:GQ 67,0,255:26:16:0/1:70 +chr10 101601301 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 101603963 . A G 39 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=46 PL:DP:SP:GT:GQ 71,9,0:3:0:1/1:63 +chr10 101615336 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 101635954 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 101637609 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 101638422 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 101639905 . T A 60 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,11;MQ=48;PV4=1,0.19,0.12,1 PL:DP:SP:GT:GQ 90,0,75:17:0:0/1:78 +chr10 101644064 . ACAGTCAGTCA ACAGTCA 39.5 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,3;MQ=50;PV4=1,0.046,1,1 PL:DP:SP:GT:GQ 77,0,77:5:0:0/1:77 +chr10 101645498 . T C 98 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=10,1,6,0;MQ=47;PV4=1,0.23,3.4e-09,1 PL:DP:SP:GT:GQ 128,0,251:17:0:0/1:99 +chr10 101645534 . G A 4.13 . DP=13;AF1=0.4998;CI95=0.5,0.5;DP4=6,1,3,0;MQ=49;PV4=1,0.0014,0.035,0.23 PL:DP:SP:GT:GQ 32,0,212:10:0:0/1:35 +chr10 101648801 . AA AAGTCCCTA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 101654696 . T C 75 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=13,4,10,1;MQ=49;PV4=0.62,7.7e-10,1.2e-08,0.16 PL:DP:SP:GT:GQ 105,0,255:28:2:0/1:99 +chr10 101658585 . T C 27 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,6;MQ=49;PV4=1,0.022,0.0066,1 PL:DP:SP:GT:GQ 57,0,122:13:0:0/1:60 +chr10 101665254 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 101671212 . c cAAACGAAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 101691423 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 101691977 . C CACTTCCAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 101698392 . T TCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 101708908 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 101716484 . G A 5.46 . DP=57;AF1=0.4999;CI95=0.5,0.5;DP4=14,16,0,8;MQ=49;PV4=0.017,1.1e-11,0.00032,1 PL:DP:SP:GT:GQ 34,0,255:38:18:0/1:37 +chr10 101728857 . T A 3.54 . DP=30;AF1=0.4998;CI95=0.5,0.5;DP4=13,1,1,3;MQ=49;PV4=0.019,0.0053,3.1e-05,1 PL:DP:SP:GT:GQ 31,0,250:18:17:0/1:34 +chr10 101744823 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 101769156 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 101769165 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 101793715 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 101802126 . G C 4.77 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,1,0;MQ=47;PV4=1,0.31,0,1 PL:DP:SP:GT:GQ 33,0,78:3:0:0/1:36 +chr10 101802187 . G C 4.23 . DP=8;AF1=0.5205;CI95=0.5,0.5;DP4=1,0,3,0;MQ=49;PV4=1,1,0.26,0.009 PL:DP:SP:GT:GQ 32,0,11:4:0:0/1:14 +chr10 101808460 . A G 25 . DP=17;AF1=0.6671;CI95=0.5,1;DP4=1,0,6,0;MQ=49;PV4=1,0.28,0.13,0.18 PL:DP:SP:GT:GQ 54,0,3:7:0:0/1:5 +chr10 101814302 . A G 3.01 . DP=4;AF1=0.4997;CI95=0.5,0.5;DP4=0,2,0,2;MQ=49;PV4=1,0.0066,0.048,1 PL:DP:SP:GT:GQ 30,0,70:4:0:0/1:33 +chr10 101824294 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 101841430 . TT TTGT 7.35 . INDEL;DP=3;AF1=0.5001;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,36:2:0:0/1:38 +chr10 101847768 . g gTTACC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 101874506 . T C 68.3 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,1,4;MQ=47 PL:DP:SP:GT:GQ 101,15,0:5:0:1/1:75 +chr10 101882858 . TAT TATCCACAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 101883039 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 101889864 . a aGACTTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 101905077 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 101914811 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 101951173 . T G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 101959794 . A T 15.1 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=5,10,0,7;MQ=50;PV4=0.13,0.016,0.0054,1 PL:DP:SP:GT:GQ 45,0,255:22:9:0/1:48 +chr10 101981904 . T C 7.81 . DP=11;AF1=0.5019;CI95=0.5,0.5;DP4=1,0,0,3;MQ=49;PV4=0.25,0.072,0.24,0.2 PL:DP:SP:GT:GQ 37,0,21:4:0:0/1:24 +chr10 101995473 . C G 4.77 . DP=16;AF1=0.4999;CI95=0.5,0.5;DP4=1,3,0,2;MQ=47;PV4=1,1,0.16,0.33 PL:DP:SP:GT:GQ 33,0,65:6:0:0/1:36 +chr10 101995813 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 101996787 . C G 78 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,9;MQ=47;PV4=1,0.44,0.014,1 PL:DP:SP:GT:GQ 108,0,52:13:0:0/1:55 +chr10 102000394 . T C 7.06 . DP=2;AF1=0.5128;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,13:2:0:0/1:16 +chr10 102001870 . A T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 102006625 . G A 41 . DP=46;AF1=0.5;CI95=0.5,0.5;DP4=4,10,5,5;MQ=50;PV4=0.4,1.7e-08,0.066,1 PL:DP:SP:GT:GQ 71,0,255:24:4:0/1:74 +chr10 102006681 . C T 99 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=3,10,3,7;MQ=48;PV4=1,1.7e-06,3.3e-06,1 PL:DP:SP:GT:GQ 145,0,255:23:0:0/1:99 +chr10 102010127 . T C 3.05 . DP=12;AF1=0.5078;CI95=0.5,0.5;DP4=0,1,0,3;MQ=47;PV4=1,0,0.24,0.061 PL:DP:SP:GT:GQ 30,0,15:4:0:0/1:18 +chr10 102013280 . T G 4.13 . DP=13;AF1=0.4998;CI95=0.5,0.5;DP4=5,1,0,3;MQ=50;PV4=0.048,0.039,0.085,0.42 PL:DP:SP:GT:GQ 32,0,151:9:13:0/1:35 +chr10 102013380 . T G 6.2 . DP=6;AF1=0.5009;CI95=0.5,0.5;DP4=0,2,0,2;MQ=49;PV4=1,1,0.14,1 PL:DP:SP:GT:GQ 35,0,24:4:0:0/1:27 +chr10 102016044 . C T 49 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=3,4,4,2;MQ=48;PV4=0.59,0.0088,0.17,1 PL:DP:SP:GT:GQ 79,0,196:13:2:0/1:82 +chr10 102048208 . G T 7.8 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,3,1,3;MQ=50;PV4=1,0.00065,0.15,1 PL:DP:SP:GT:GQ 37,0,170:9:0:0/1:40 +chr10 102050242 . C A 52 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=10,4,1,6;MQ=49;PV4=0.024,5e-06,0.00011,0.29 PL:DP:SP:GT:GQ 82,0,255:21:16:0/1:85 +chr10 102056163 . A T 4.77 . DP=7;AF1=0.4999;CI95=0.5,0.5;DP4=1,1,0,2;MQ=49;PV4=1,0.0013,0.092,1 PL:DP:SP:GT:GQ 33,0,88:4:0:0/1:36 +chr10 102058191 . T TAC 3.25 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 102059329 . G C 29 . DP=4;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,1,2;MQ=47;PV4=1,0.0094,0.41,1 PL:DP:SP:GT:GQ 59,0,35:4:0:0/1:38 +chr10 102072923 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 102089663 . C T 99 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=9,3,9,5;MQ=49;PV4=0.68,6.1e-09,0.006,1 PL:DP:SP:GT:GQ 149,0,255:26:2:0/1:99 +chr10 102114201 . G A 6.2 . DP=28;AF1=0.4999;CI95=0.5,0.5;DP4=4,2,3,0;MQ=47;PV4=0.5,0.087,0.34,0.37 PL:DP:SP:GT:GQ 35,0,145:9:3:0/1:38 +chr10 102114207 . T A 27 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=10,2,6,0;MQ=48;PV4=0.53,0.03,0.032,0.00097 PL:DP:SP:GT:GQ 57,0,215:18:3:0/1:60 +chr10 102116403 . T C 4.13 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,38:2:0:0/1:34 +chr10 102130389 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 102154214 . c cCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 102180530 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 102229544 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 102240673 . GT GTAT 18.5 . INDEL;DP=13;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 56,0,43:4:0:0/1:46 +chr10 102249563 . C G 3.01 . DP=14;AF1=0.4997;CI95=0.5,0.5;DP4=0,4,0,3;MQ=50;PV4=1,0.12,0.14,0.24 PL:DP:SP:GT:GQ 30,0,72:7:0:0/1:33 +chr10 102250530 . T TCCGACCTTGTCAA 99 . INDEL;DP=32;AF1=1;CI95=1,1;DP4=0,0,19,10;MQ=50 PL:DP:SP:GT:GQ 228,87,0:29:0:1/1:99 +chr10 102257370 . T A 13.2 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=1,0,3,0;MQ=49;PV4=1,0.0043,0.33,0.062 PL:DP:SP:GT:GQ 43,0,38:4:0:0/1:40 +chr10 102267312 . C G 43 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=3,6,0,6;MQ=48;PV4=0.23,0.24,0.0085,1 PL:DP:SP:GT:GQ 73,0,167:15:6:0/1:76 +chr10 102287348 . G C 6.98 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,41:2:0:0/1:38 +chr10 102289041 . G C 3.02 . DP=7;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 102305540 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 102307016 . C G 27 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,3;MQ=48;PV4=1,0.39,0.0018,0.28 PL:DP:SP:GT:GQ 57,0,87:7:0:0/1:60 +chr10 102330252 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 102349209 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 102358874 . GC GCGTCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 102361889 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 102362454 . C CTTAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 102380133 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 102388269 . TTT TTTGATT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 102391187 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 102395490 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 102412664 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 102420816 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 102427989 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 102430326 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 102448534 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 102476434 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 102488785 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 102495039 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 102505136 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 102520859 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 102527306 . TCC T 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 102544780 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 102550018 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 102550566 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 102572777 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 102624018 . atgtgtg atgtg 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 102640077 . T TACGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 102661743 . A AAC 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 102679994 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 102684380 . C A 99 . DP=59;AF1=0.5;CI95=0.5,0.5;DP4=5,19,7,20;MQ=49;PV4=0.75,7.8e-16,4.1e-06,1 PL:DP:SP:GT:GQ 202,0,255:51:1:0/1:99 +chr10 102700560 . c cAGCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 102707623 . T C 10.2 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr10 102708343 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 102724959 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 102739841 . G A 6.2 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=1,0,3,0;MQ=50;PV4=1,0.017,0.33,1 PL:DP:SP:GT:GQ 35,0,34:4:0:0/1:34 +chr10 102741381 . T G 13 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr10 102744331 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 102753424 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 102761293 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 102762256 . C T 17.1 . DP=4;AF1=0.5001;CI95=0.5,0.5;DP4=0,1,1,1;MQ=47;PV4=1,0.072,0,1 PL:DP:SP:GT:GQ 47,0,34:3:0:0/1:37 +chr10 102764081 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 102774720 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 102778152 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 102780312 . G T 76 . DP=10;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=49 PL:DP:SP:GT:GQ 109,27,0:9:0:1/1:99 +chr10 102780354 . TGGG TGG 61.5 . INDEL;DP=24;AF1=0.5;CI95=0.5,0.5;DP4=7,1,8,0;MQ=50;PV4=1,0.076,1,1 PL:DP:SP:GT:GQ 99,0,125:16:0:0/1:99 +chr10 102780358 . AG A 23.5 . INDEL;DP=21;AF1=0.5;CI95=0.5,0.5;DP4=7,1,4,0;MQ=50;PV4=1,0.0036,1,0.17 PL:DP:SP:GT:GQ 61,0,170:12:0:0/1:64 +chr10 102780435 . CC CCAGCAAC 5.08 . INDEL;DP=9;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,53:3:0:0/1:44 +chr10 102783678 . T C 10.2 . DP=17;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr10 102788621 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 102791684 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 102795203 . G T 9.31 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=46 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 102796441 . T G 7.59 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 102796952 . C A 29 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=5,4,0,5;MQ=49;PV4=0.086,0.073,0.0025,1 PL:DP:SP:GT:GQ 59,0,203:14:11:0/1:62 +chr10 102798346 . T C 34 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=14,0,8,0;MQ=49;PV4=1,1.4e-09,0.01,1 PL:DP:SP:GT:GQ 64,0,233:22:0:0/1:67 +chr10 102807720 . AG AGTCTCTG 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 102815061 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 102823925 . G A 4.14 . DP=4;AF1=0.5024;CI95=0.5,0.5;DP4=1,0,2,0;MQ=49;PV4=1,0.15,0.33,0.072 PL:DP:SP:GT:GQ 32,0,20:3:0:0/1:23 +chr10 102824694 . CA CCCAAAAA 5.08 . INDEL;DP=13;AF1=0.5008;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,25:3:0:0/1:28 +chr10 102835066 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 102836089 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 102839546 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 102839553 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 102848581 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 102848826 . A T 14.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 102867522 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 102894006 . G A 8.64 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,3;MQ=47;PV4=1,0.028,0.018,1 PL:DP:SP:GT:GQ 38,0,66:5:0:0/1:41 +chr10 102894452 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 102896505 . G A 6.98 . DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,0,2;MQ=44;PV4=0.33,0.21,0.15,0.24 PL:DP:SP:GT:GQ 36,0,62:4:5:0/1:39 +chr10 102902105 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 102906796 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 102916942 . TGAC T 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 102929239 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 102935820 . GGT G 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 102948760 . a aCC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 102950976 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 102994616 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 103028462 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 103066975 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 103079605 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 103099852 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 103147385 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 103209827 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 103221870 . CAGGAGGA CAGGA 99 . INDEL;DP=14;AF1=1;CI95=1,1;DP4=0,0,0,13;MQ=50 PL:DP:SP:GT:GQ 252,39,0:13:0:1/1:99 +chr10 103251241 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 103281634 . C G 99 . DP=19;AF1=1;CI95=1,1;DP4=0,0,0,17;MQ=49 PL:DP:SP:GT:GQ 132,51,0:17:0:1/1:99 +chr10 103294568 . T G 17.1 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=5,16,4,4;MQ=49;PV4=0.21,6.1e-05,0.0005,1 PL:DP:SP:GT:GQ 47,0,255:29:7:0/1:50 +chr10 103340168 . C G 24 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,3,0,3;MQ=47;PV4=1,1,0.19,0.14 PL:DP:SP:GT:GQ 54,0,83:7:0:0/1:57 +chr10 103343219 . T C 3.54 . DP=5;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,2,0;MQ=47;PV4=1,0.028,0.23,1 PL:DP:SP:GT:GQ 31,0,41:3:0:0/1:34 +chr10 103346533 . a aAACTAGAGG 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 103369616 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 103394425 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 103401310 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 103411864 . T G 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 103416862 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 103419306 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 103424712 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 103432592 . A C 37.2 . DP=16;AF1=0.5207;CI95=0.5,1;DP4=1,0,5,0;MQ=48;PV4=1,0.016,0.031,0.11 PL:DP:SP:GT:GQ 67,0,11:6:0:0/1:14 +chr10 103463276 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 103501939 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 103525164 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 103541362 . A G 13.2 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=4,0,2,0;MQ=48;PV4=1,0.063,8.2e-06,1 PL:DP:SP:GT:GQ 43,0,128:6:0:0/1:46 +chr10 103541948 . C T 8.64 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=46;PV4=1,0.35,1,1 PL:DP:SP:GT:GQ 38,0,48:4:0:0/1:41 +chr10 103552758 . ATG ATGTG 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 103567720 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 103570138 . TA TACAA 3.25 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.015 PL:DP:SP:GT:GQ 38,0,90:4:0:0/1:41 +chr10 103572781 . G A 3.54 . DP=13;AF1=0.4998;CI95=0.5,0.5;DP4=7,0,3,0;MQ=49;PV4=1,0.24,1.6e-05,0.071 PL:DP:SP:GT:GQ 31,0,109:10:0:0/1:34 +chr10 103577872 . C CTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 103586903 . GG GGAGGAGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 103656563 . GA GATACAGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 103698054 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 103737351 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 103740829 . tg tGTGAg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 103755985 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 103771440 . T G 15.1 . DP=6;AF1=0.5002;CI95=0.5,0.5;DP4=1,0,3,0;MQ=49;PV4=1,0.04,0.33,0.3 PL:DP:SP:GT:GQ 45,0,30:4:0:0/1:33 +chr10 103799758 . C T 6.2 . DP=12;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=46;PV4=1,0.11,0.029,1 PL:DP:SP:GT:GQ 35,0,68:4:0:0/1:38 +chr10 103807653 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 103807682 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 103813780 . AC ACGTACCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 103826794 . C T 11.3 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=3,1,1,2;MQ=49;PV4=0.49,0.15,0.031,1 PL:DP:SP:GT:GQ 41,0,87:7:3:0/1:44 +chr10 103834070 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 103902902 . C T,G 15.3 . DP=9;AF1=0.7303;CI95=0.5,1;DP4=0,1,0,4;MQ=48;PV4=1,1,0.21,1 PL:DP:SP:GT:GQ 47,3,39,5,0,47:5:0:0/1:3 +chr10 103908042 . A G 12.3 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=49;PV4=1,0.37,0.12,1 PL:DP:SP:GT:GQ 42,0,48:6:0:0/1:44 +chr10 103909144 . C T 5.29 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr10 103988053 . C G 3.02 . DP=3;AF1=0.5005;CI95=0.5,0.5;DP4=1,0,2,0;MQ=49;PV4=1,0.12,0.33,0.23 PL:DP:SP:GT:GQ 30,0,25:3:0:0/1:27 +chr10 103990215 . G T 6.26 . DP=2;AF1=0.5101;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 35,0,14:2:0:0/1:17 +chr10 103997357 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 104000307 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 104000317 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 104028486 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 104038149 . G A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 104095232 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 104106192 . cta c 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 104125644 . A G 13 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr10 104128954 . T A 59 . DP=47;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=49 PL:DP:SP:GT:GQ 92,24,0:8:0:1/1:96 +chr10 104129610 . T G 37 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=9,0,0,8;MQ=49;PV4=4.1e-05,0.0014,8.6e-07,1 PL:DP:SP:GT:GQ 67,0,178:17:44:0/1:70 +chr10 104136469 . T C 88.5 . DP=49;AF1=1;CI95=0.5,1;DP4=0,1,2,6;MQ=48;PV4=1,1,0.21,1 PL:DP:SP:GT:GQ 121,12,0:9:0:1/1:72 +chr10 104139130 . C T 13.2 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=2,6,0,6;MQ=49;PV4=0.47,0.092,0.015,0.33 PL:DP:SP:GT:GQ 43,0,151:14:3:0/1:46 +chr10 104139504 . A G 10.4 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,3;MQ=49;PV4=0.4,0.12,0.11,1 PL:DP:SP:GT:GQ 40,0,58:5:0:0/1:43 +chr10 104157711 . T G 13.2 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=5,0,5,0;MQ=50;PV4=1,2.9e-06,1,1 PL:DP:SP:GT:GQ 43,0,151:10:0:0/1:46 +chr10 104160434 . A G 54.1 . DP=11;AF1=1;CI95=0.5,1;DP4=1,0,5,1;MQ=48;PV4=1,1,0.19,0.48 PL:DP:SP:GT:GQ 85,5,0:7:0:1/1:46 +chr10 104161967 . T C 4.61 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr10 104163489 . G A 13.2 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 45,9,0:3:0:1/1:63 +chr10 104194244 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 104216931 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 104233277 . G A 16.1 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=3,0,5,0;MQ=49;PV4=1,0.071,1,1 PL:DP:SP:GT:GQ 46,0,37:8:0:0/1:39 +chr10 104233278 . G A 4.13 . DP=19;AF1=0.4998;CI95=0.5,0.5;DP4=5,0,3,0;MQ=48;PV4=1,0.21,0.035,1 PL:DP:SP:GT:GQ 32,0,87:8:0:0/1:35 +chr10 104242761 . C CGCGGCCACTGGCCA 99 . INDEL;DP=21;AF1=1;CI95=1,1;DP4=0,0,17,0;MQ=50 PL:DP:SP:GT:GQ 233,51,0:17:0:1/1:99 +chr10 104268800 . G C 7.77 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 39,9,0:3:0:1/1:63 +chr10 104268857 . GA GAA 25.5 . INDEL;DP=35;AF1=0.5025;CI95=0.5,0.5;DP4=1,0,2,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 63,0,20:3:0:0/1:23 +chr10 104274861 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 104292594 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 104315277 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 104332548 . G C 4.16 . DP=5;AF1=0.5062;CI95=0.5,0.5;DP4=1,0,2,0;MQ=40;PV4=1,1,0.29,1 PL:DP:SP:GT:GQ 32,0,16:3:0:0/1:19 +chr10 104352276 . G T 6.98 . DP=12;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,4,0;MQ=49;PV4=1,0.097,1,1 PL:DP:SP:GT:GQ 36,0,81:8:0:0/1:39 +chr10 104352278 . CCA CCATAGTCA 7.35 . INDEL;DP=12;AF1=0.5005;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,27:2:0:0/1:30 +chr10 104352989 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 104368069 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 104375258 . G A 55.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=45 PL:DP:SP:GT:GQ 88,12,0:4:0:1/1:72 +chr10 104387015 . CTTTT CTTT 3.14 . INDEL;DP=51;AF1=0.6242;CI95=0.5,1;DP4=1,0,0,2;MQ=50;PV4=0.33,1,1,1 PL:DP:SP:GT:GQ 37,0,4:3:0:0/1:6 +chr10 104387019 . T C 4.53 . DP=46;AF1=0.5938;CI95=0.5,1;DP4=1,0,0,2;MQ=49;PV4=0.33,1,0.17,1 PL:DP:SP:GT:GQ 32,0,5:3:0:0/1:7 +chr10 104389932 . T G 3.02 . DP=9;AF1=0.5005;CI95=0.5,0.5;DP4=0,2,0,3;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,25:5:0:0/1:27 +chr10 104389935 . C T 9.52 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=46;PV4=1,1,0.092,1 PL:DP:SP:GT:GQ 39,0,38:4:0:0/1:38 +chr10 104395299 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 104414396 . A C 3.66 . DP=5;AF1=0.5261;CI95=0.5,1;DP4=1,0,2,0;MQ=49;PV4=1,1,0.33,1 PL:DP:SP:GT:GQ 31,0,10:3:0:0/1:13 +chr10 104420715 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 104421697 . G GATATATAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 104445545 . AGG AG 99 . INDEL;DP=45;AF1=1;CI95=1,1;DP4=2,0,35,5;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 248,67,0:42:0:1/1:99 +chr10 104459078 . CTA C 3.25 . INDEL;DP=12;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 104459079 . TAA T 99 . INDEL;DP=11;AF1=1;CI95=1,1;DP4=0,0,9,1;MQ=50 PL:DP:SP:GT:GQ 240,30,0:10:0:1/1:99 +chr10 104462853 . A AATAGGGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 104479331 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 104486304 . G C 54.1 . DP=21;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=47 PL:DP:SP:GT:GQ 87,18,0:6:0:1/1:90 +chr10 104486974 . C T 14.1 . DP=21;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 46,9,0:3:0:1/1:63 +chr10 104489011 . G C 48.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=46 PL:DP:SP:GT:GQ 81,12,0:4:0:1/1:72 +chr10 104492707 . G C 32.1 . DP=31;AF1=0.5163;CI95=0.5,1;DP4=1,0,0,5;MQ=48;PV4=0.17,0.076,1,0.4 PL:DP:SP:GT:GQ 62,0,12:6:0:0/1:15 +chr10 104518242 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 104538829 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 104559658 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 104560442 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 104572276 . A G 85 . DP=24;AF1=1;CI95=1,1;DP4=0,0,18,1;MQ=49 PL:DP:SP:GT:GQ 118,57,0:19:0:1/1:99 +chr10 104572963 . T C 47.1 . DP=6;AF1=1;CI95=0.5,1;DP4=0,1,0,5;MQ=48;PV4=1,1,0.15,0.37 PL:DP:SP:GT:GQ 78,5,0:6:0:1/1:46 +chr10 104573017 . G T 57.3 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=48 PL:DP:SP:GT:GQ 90,15,0:5:0:1/1:75 +chr10 104577238 . GC GCGCATTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 104589146 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 104590965 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 104591236 . G T 14.2 . DP=15;AF1=0.5001;CI95=0.5,0.5;DP4=3,0,3,0;MQ=48;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,36:6:0:0/1:38 +chr10 104593829 . TCGT TCGTGCGT 3.25 . INDEL;DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,2,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,90:4:0:0/1:41 +chr10 104594828 . TG TACTCG 7.35 . INDEL;DP=7;AF1=0.5005;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,27:2:0:0/1:30 +chr10 104605297 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 104605519 . A ANNN 7.69 . INDEL;DP=2;AF1=0.5554;CI95=0.5,1;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,7:2:0:0/1:10 +chr10 104605688 . AA AACAGA 5.08 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,1,0;MQ=50;PV4=0.33,1,1,1 PL:DP:SP:GT:GQ 41,0,57:3:0:0/1:44 +chr10 104629634 . T A 3.01 . DP=16;AF1=0.4997;CI95=0.5,0.5;DP4=1,6,0,3;MQ=49;PV4=1,0.052,0.11,0.18 PL:DP:SP:GT:GQ 30,0,160:10:0:0/1:33 +chr10 104630357 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 104640996 . GA GACACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 104690828 . C T 6.79 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr10 104698684 . tg tGGCCCAAGACAg 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 104701307 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 104706911 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 104735862 . C T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 104759296 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 104770871 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 104788696 . c cTAAAAGTT 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=48 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 104795292 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 104801739 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 104821306 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 104841341 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 104845032 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 104855781 . AAAAG A 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 104857005 . A T 3.01 . DP=11;AF1=0.4998;CI95=0.5,0.5;DP4=3,0,2,0;MQ=49;PV4=1,1,0.14,0.19 PL:DP:SP:GT:GQ 30,0,37:5:0:0/1:32 +chr10 104858289 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 104885047 . C G 20.1 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=39;PV4=1,1,1,0.38 PL:DP:SP:GT:GQ 50,0,39:4:0:0/1:42 +chr10 104919704 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 104923137 . c cTATCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 104928706 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 104931747 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 104972244 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 104974907 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 104983386 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 105005681 . TT TTGGT 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 105006048 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 105006255 . C T 6.98 . DP=11;AF1=0.4999;CI95=0.5,0.5;DP4=0,3,0,2;MQ=47;PV4=1,1,0.014,1 PL:DP:SP:GT:GQ 36,0,56:5:0:0/1:39 +chr10 105038817 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 105052901 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 105082904 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 105097354 . C CGTCAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 105110262 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 105128504 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 105158281 . T G 50 . DP=24;AF1=0.501;CI95=0.5,0.5;DP4=0,2,0,8;MQ=48;PV4=1,0.024,0.4,1 PL:DP:SP:GT:GQ 80,0,24:10:0:0/1:27 +chr10 105176179 . T C 60 . DP=33;AF1=1;CI95=1,1;DP4=0,0,10,0;MQ=49 PL:DP:SP:GT:GQ 93,30,0:10:0:1/1:99 +chr10 105200445 . GGCTGC GGCTGCTGC 3.25 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,67:4:0:0/1:41 +chr10 105215438 . A T 11.3 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=5,4,0,5;MQ=47;PV4=0.086,0.0059,0.026,0.21 PL:DP:SP:GT:GQ 41,0,238:14:11:0/1:44 +chr10 105215442 . C T 3.54 . DP=19;AF1=0.4998;CI95=0.5,0.5;DP4=5,1,0,3;MQ=47;PV4=0.048,0.045,0.22,0.21 PL:DP:SP:GT:GQ 31,0,161:9:13:0/1:34 +chr10 105215444 . G A 3.01 . DP=21;AF1=0.4997;CI95=0.5,0.5;DP4=5,1,0,3;MQ=47;PV4=0.048,0.056,0.018,0.36 PL:DP:SP:GT:GQ 30,0,153:9:13:0/1:33 +chr10 105236493 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 105254565 . CGTGT CGT 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 105257563 . AT ATTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 105285099 . t tGCA 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 105289519 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 105324849 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 105340536 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 105344052 . AGCA AGCACTGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 105349816 . G A 4.13 . DP=10;AF1=0.4998;CI95=0.5,0.5;DP4=7,0,3,0;MQ=49;PV4=1,0.037,0.0059,1 PL:DP:SP:GT:GQ 32,0,157:10:0:0/1:35 +chr10 105351164 . T TGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 105362048 . G A 4.79 . DP=5;AF1=0.5039;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.33,0.41,1 PL:DP:SP:GT:GQ 33,0,18:3:0:0/1:21 +chr10 105362209 . T C 82.4 . DP=80;AF1=1;CI95=0.5,1;DP4=1,0,7,5;MQ=50;PV4=1,0.037,0.32,1 PL:DP:SP:GT:GQ 115,13,0:13:0:1/1:65 +chr10 105363289 . T C 99 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=4,6,8,5;MQ=48;PV4=0.41,1.5e-05,1.9e-06,0.27 PL:DP:SP:GT:GQ 184,0,255:23:4:0/1:99 +chr10 105378939 . T TTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 105388763 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 105401099 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 105405531 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 105407716 . T C 7.8 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,44:2:0:0/1:39 +chr10 105418292 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 105428453 . CAGAGAGAGAGA CAGAGAGAGA 51.4 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 91,9,0:3:0:1/1:63 +chr10 105435827 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 105440819 . GG GGAAAACTCAG 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 105460645 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 105464565 . a aCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 105491271 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 105495612 . T C 34 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=47 PL:DP:SP:GT:GQ 66,9,0:3:0:1/1:63 +chr10 105508436 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 105522641 . CA CATGAATA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 105539350 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 105547124 . c cCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 105565737 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 105580807 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 105586215 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 105600033 . G GTC 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 105604731 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 105652623 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 105657316 . G C 49.1 . DP=44;AF1=0.5064;CI95=0.5,0.5;DP4=1,1,0,13;MQ=49;PV4=0.13,0.027,0.14,1 PL:DP:SP:GT:GQ 79,0,16:15:0:0/1:19 +chr10 105658588 . G C 52 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=12,1,9,0;MQ=49;PV4=1,1.7e-08,2e-06,1 PL:DP:SP:GT:GQ 82,0,255:22:0:0/1:85 +chr10 105659826 . T C 64.1 . DP=42;AF1=0.5102;CI95=0.5,0.5;DP4=1,2,26,1;MQ=48;PV4=0.02,0.00088,0.18,1 PL:DP:SP:GT:GQ 94,0,14:30:17:0/1:17 +chr10 105727656 . AAGAG AAG 99 . INDEL;DP=21;AF1=0.5;CI95=0.5,0.5;DP4=0,7,2,11;MQ=50;PV4=0.52,1,1,1 PL:DP:SP:GT:GQ 255,0,146:20:3:0/1:99 +chr10 105745515 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 105752714 . G GGAC 3.25 . INDEL;DP=9;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,0.24 PL:DP:SP:GT:GQ 38,0,99:4:0:0/1:41 +chr10 105758670 . A G 47 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=6,1,5,0;MQ=48;PV4=1,0.015,0.0082,1 PL:DP:SP:GT:GQ 77,0,186:12:0:0/1:80 +chr10 105759605 . TGT TGTAAGGT 7.35 . INDEL;DP=4;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,28:2:0:0/1:31 +chr10 105761436 . T G 61.1 . DP=13;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=48 PL:DP:SP:GT:GQ 94,21,0:7:0:1/1:84 +chr10 105761436 . TT TTCT 12.7 . INDEL;DP=13;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 105762429 . C G 33 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,2,0,4;MQ=49;PV4=0.43,0.18,0.039,1 PL:DP:SP:GT:GQ 63,0,105:8:4:0/1:66 +chr10 105765298 . CTA CTAGATA 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,0.48 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr10 105777481 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 105786239 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 105793173 . T G 99 . DP=27;AF1=1;CI95=1,1;DP4=0,1,4,17;MQ=49;PV4=1,0.074,1,1 PL:DP:SP:GT:GQ 161,41,0:22:0:1/1:99 +chr10 105796399 . G C 19 . DP=24;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=50 PL:DP:SP:GT:GQ 51,9,0:3:0:1/1:63 +chr10 105796449 . A G 33.5 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=49 PL:DP:SP:GT:GQ 66,12,0:4:0:1/1:72 +chr10 105796738 . A C 20.8 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=44 PL:DP:SP:GT:GQ 52,6,0:2:0:1/1:49 +chr10 105796819 . A G 41.5 . DP=25;AF1=1;CI95=0.5,1;DP4=0,0,3,1;MQ=49 PL:DP:SP:GT:GQ 74,12,0:4:0:1/1:72 +chr10 105797378 . G A 52 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=2,0,6,0;MQ=47;PV4=1,0.27,0.1,1 PL:DP:SP:GT:GQ 82,0,37:8:0:0/1:40 +chr10 105798342 . C A 3.15 . DP=7;AF1=0.5333;CI95=0.5,1;DP4=0,1,0,2;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,9:3:0:0/1:12 +chr10 105798872 . T C 34.1 . DP=16;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=50 PL:DP:SP:GT:GQ 67,18,0:6:0:1/1:90 +chr10 105799216 . G T 8.7 . DP=26;AF1=0.508;CI95=0.5,0.5;DP4=1,0,0,3;MQ=50;PV4=0.25,0.087,0.33,1 PL:DP:SP:GT:GQ 38,0,15:4:0:0/1:18 +chr10 105799825 . G A 31 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,6;MQ=49;PV4=1,0.039,0.031,1 PL:DP:SP:GT:GQ 61,0,76:11:0:0/1:64 +chr10 105801221 . C A 10.4 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,5,3,0;MQ=49;PV4=0.018,0.18,0.007,1 PL:DP:SP:GT:GQ 40,0,104:8:17:0/1:43 +chr10 105803680 . C A 25 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,5;MQ=48;PV4=1,0.061,0.0052,1 PL:DP:SP:GT:GQ 55,0,110:11:0:0/1:58 +chr10 105805436 . G A 18 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 50,9,0:3:0:1/1:63 +chr10 105805484 . A G 28 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=4,0,4,0;MQ=48;PV4=1,0.096,0.014,1 PL:DP:SP:GT:GQ 58,0,94:8:0:0/1:61 +chr10 105810400 . T C 4.77 . DP=52;AF1=0.4999;CI95=0.5,0.5;DP4=7,18,2,5;MQ=49;PV4=1,9.2e-05,0.0002,1 PL:DP:SP:GT:GQ 33,0,255:32:0:0/1:36 +chr10 105814826 . C A 11.3 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,4;MQ=49;PV4=1,0.00075,0.031,0.09 PL:DP:SP:GT:GQ 41,0,183:12:0:0/1:44 +chr10 105816916 . C T 65 . DP=20;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=49 PL:DP:SP:GT:GQ 98,24,0:8:0:1/1:96 +chr10 105817043 . C T 5.51 . DP=32;AF1=0.5079;CI95=0.5,0.5;DP4=0,1,0,3;MQ=50;PV4=1,0.14,0.33,0.23 PL:DP:SP:GT:GQ 34,0,15:4:0:0/1:18 +chr10 105817891 . G A 8.64 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=11,1,4,1;MQ=50;PV4=0.51,0.0038,0.39,1 PL:DP:SP:GT:GQ 38,0,235:17:3:0/1:41 +chr10 105824333 . G A 99 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=9,5,2,4;MQ=48;PV4=0.34,0.13,5.4e-09,0.43 PL:DP:SP:GT:GQ 152,0,255:20:5:0/1:99 +chr10 105833027 . T A 6.2 . DP=17;AF1=0.4999;CI95=0.5,0.5;DP4=3,1,0,4;MQ=49;PV4=0.14,0.0017,0.053,1 PL:DP:SP:GT:GQ 35,0,102:8:8:0/1:38 +chr10 105848288 . T A 13.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr10 105857860 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 105864078 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 105875609 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 105875625 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 105878489 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 105883815 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 105903161 . A T 3.54 . DP=7;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,3,0;MQ=49;PV4=1,0.016,0.25,1 PL:DP:SP:GT:GQ 31,0,39:5:0:0/1:33 +chr10 105911097 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 105927332 . A G 27 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=4,1,5,0;MQ=49;PV4=1,0.25,0.0075,1 PL:DP:SP:GT:GQ 57,0,87:10:0:0/1:60 +chr10 105937036 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 105937956 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 105944706 . A T 7.8 . DP=11;AF1=0.5009;CI95=0.5,0.5;DP4=1,0,3,0;MQ=47;PV4=1,0.11,0.3,1 PL:DP:SP:GT:GQ 37,0,24:4:0:0/1:27 +chr10 105952535 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 105967931 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 105971131 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 105971294 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 106020765 . A C,G 5.29 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=49 PL:DP:SP:GT:GQ 58,29,37,23,0,37:4:0:1/1:49 +chr10 106027237 . TT TTCT 5.09 . INDEL;DP=9;AF1=0.502;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.41 PL:DP:SP:GT:GQ 41,0,21:3:0:0/1:24 +chr10 106053185 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 106064103 . C T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 106075363 . G A 9.53 . DP=3;AF1=0.5016;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.36,0.33,1 PL:DP:SP:GT:GQ 39,0,22:3:0:0/1:25 +chr10 106076377 . ca cATTACAa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 106091744 . G GATCTTCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 106121259 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 106181114 . TG TGCTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 106203254 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 106240979 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 106243551 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 106246852 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 106322715 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 106362591 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 106425752 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 106427030 . AA AAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 106435438 . g gCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 106449749 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 106470364 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 106511364 . g gTTTGTCT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 106522678 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 106548186 . ac aCTCc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 106562217 . G A 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 106592631 . a aAG 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 106601872 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 106602863 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 106626852 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 106630315 . A ACGAGT 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 106654382 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 106654563 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 106692691 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 106697752 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 106703672 . C A 7.05 . DP=2;AF1=0.5101;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,14:2:0:0/1:17 +chr10 106716265 . G C 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 106738171 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 106750803 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 106778569 . A C 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 106849257 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 106879199 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 106923984 . G A 7.8 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,44:2:0:0/1:39 +chr10 106943089 . T TCA 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 106989164 . ca cAGTGa 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr10 106990560 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 106994480 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 107006604 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 107006685 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 107013291 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 107015506 . T G 28 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=14,3,0,8;MQ=49;PV4=0.00015,0.0023,0.0007,0.2 PL:DP:SP:GT:GQ 58,0,255:25:38:0/1:61 +chr10 107030889 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 107038642 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 107046880 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 107047523 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 107049077 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 107052914 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 107062382 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 107076321 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 107086956 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 107156664 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 107238684 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 107255086 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 107274117 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 107278938 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 107307607 . t tCTAGACG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 107320167 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 107357395 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 107368610 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 107389616 . g gATCGCCGGCTCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 107413162 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 107435417 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 107437229 . a aCGACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 107449736 . C T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 107453463 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 107453478 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 107463890 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 107468838 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 107517864 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 107566162 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 107576467 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 107583187 . T A 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 107589397 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 107601435 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 107614456 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 107676886 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 107692020 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 107712552 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 107785146 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 107786856 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 107861014 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 107944986 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 107955065 . G T 3.57 . DP=2;AF1=0.5048;CI95=0.5,0.5;DP4=1,0,1,0;MQ=43;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,17:2:0:0/1:20 +chr10 107957086 . A G 11.3 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 107970285 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 107972892 . A T 3.41 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 32,6,0:2:0:1/1:49 +chr10 107978203 . T TGTACTAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 108030566 . gccc gCCCTTAGCccc 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 108051891 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 108068866 . caagat cAAGATaagat 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 108138027 . aa aACCTTTGa 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 108144405 . g gGTCAATGGTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 108146313 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 108150455 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 108167106 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 108187619 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 108191832 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 108195443 . TC TCC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 108247693 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 108289254 . T TTGCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 108295277 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 108301560 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 108305065 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 108310105 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 108310140 . A G 4.77 . DP=9;AF1=0.4999;CI95=0.5,0.5;DP4=1,4,4,0;MQ=41;PV4=0.048,0.0008,1,0.22 PL:DP:SP:GT:GQ 33,0,105:9:13:0/1:36 +chr10 108363883 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 108371571 . AGTTTGTTTGTTT AGTTTGTTTGTTTGTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 108373318 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 108380213 . G A 99 . DP=56;AF1=0.5;CI95=0.5,0.5;DP4=11,9,14,12;MQ=49;PV4=1,0.00077,0.00024,1 PL:DP:SP:GT:GQ 223,0,255:46:0:0/1:99 +chr10 108389249 . T C 74 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=43 PL:DP:SP:GT:GQ 106,9,0:3:0:1/1:63 +chr10 108400028 . T G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 108403325 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 108425576 . G C 5.46 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,44:2:0:0/1:37 +chr10 108434383 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 108436256 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 108453688 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 108455093 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 108466278 . A G 48 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=5,2,7,0;MQ=49;PV4=0.46,0.056,0.0011,1 PL:DP:SP:GT:GQ 78,0,149:14:3:0/1:81 +chr10 108469102 . Gaaaaacaaaaacaaaaacaaaaaca Gaaaaacaaaaacaaaaaca 12.7 . INDEL;DP=7;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 108471380 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 108489914 . G C 68 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=0,11,0,10;MQ=48;PV4=1,3.5e-06,9.9e-09,1 PL:DP:SP:GT:GQ 98,0,209:21:0:0/1:99 +chr10 108535880 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 108547962 . ag aGAGACCGGCg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 108550563 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 108558208 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 108629065 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 108633096 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 108665848 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 108692154 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 108714539 . t tACTAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 108730740 . tcagg t 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 108786843 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 108812465 . CT CTAGTGTAGCGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 108814943 . TT TTCTTTTTCAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 108820174 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 108824423 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 108846926 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 108900722 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 108906472 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 108907126 . AGA AGAGTGA 7.38 . INDEL;DP=3;AF1=0.505;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,17:2:0:0/1:20 +chr10 108916785 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 108932484 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 108936414 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 108936549 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 109002613 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 109014188 . c cTTTTCCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 109017055 . a aCAGCAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 109018800 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 109026743 . cc cCGTAc 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 109039285 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 109040393 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 109105890 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 109108783 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 109128919 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 109134595 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 109138646 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 109139722 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 109155979 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 109167442 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 109206736 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 109228992 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 109236568 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 109237575 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 109260404 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 109272560 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 109281426 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 109284612 . G GGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 109287211 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 109293465 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 109322152 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 109338027 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 109343839 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 109365952 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 109382503 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 109394800 . ctt cTTGAGTGtt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 109412947 . G T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 109425797 . G GTCACCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 109476970 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 109477102 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 109536406 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 109546478 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 109548632 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 109555076 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 109581665 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 109587008 . t tCTTCGGTTAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 109587449 . a aTCTTCGGT 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 109587973 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 109614016 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 109629049 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 109632286 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 109657605 . A ATAAGATT 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 109662941 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 109675926 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 109693776 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 109701502 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 109702981 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 109706648 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 109721424 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 109724221 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 109756185 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 109792423 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 109797850 . A C 4.21 . DP=2;AF1=0.5161;CI95=0.5,0.5;DP4=1,0,0,1;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,12:2:0:0/1:15 +chr10 109813763 . GT GTATT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 109813855 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 109824345 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 109824456 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 109830369 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 109845393 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 109848879 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 109852006 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 109854340 . A C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 109854616 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 109858246 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 109871225 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 109906973 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 109917539 . A AAT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 109923628 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 109958817 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 109989485 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 110034811 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 110092165 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 110104003 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 110106797 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 110135383 . C CCAGACG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 110148220 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 110162503 . A C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 110169275 . ACCCC ACCCCCCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 110220400 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 110220739 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 110265385 . tt tTTATCAGTAt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 110277627 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 110298395 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 110307124 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 110314689 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 110340655 . C CTCTAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 110344472 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 110365331 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 110386293 . G GTATGTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 110388654 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 110392190 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 110400166 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 110402644 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 110417157 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 110437090 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 110462663 . g gCGGGGATT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 110476679 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 110505465 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 110522788 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 110585071 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 110658440 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 110705699 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 110787184 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 110799524 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 110806598 . A T 10.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 110826406 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 110831375 . T TCTGAAGAGGAGTTGG 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 110832962 . G C 5.29 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=34 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr10 110845501 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 110872706 . AG ACGTG 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 110880973 . t tCAG 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 110952817 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 110979748 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 110982625 . T TGGCCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 110982790 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 111035797 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 111079321 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 111163289 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 111176969 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 111225401 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 111253849 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 111272386 . a aCACCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 111322356 . G A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 111336867 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 111378747 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 111404690 . T G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 111405366 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 111406140 . T TGTGAGAGTTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 111411739 . T TGCTCTCTCAGAGTG 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 111421513 . G A 60.3 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=48 PL:DP:SP:GT:GQ 93,15,0:5:0:1/1:75 +chr10 111423506 . C A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 111434582 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 111440391 . A T 3.01 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=1,1,0,1;MQ=46;PV4=1,1,0.15,1 PL:DP:SP:GT:GQ 30,0,55:3:0:0/1:33 +chr10 111466152 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 111484268 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 111513182 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 111538987 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 111540898 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 111545884 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 111561684 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 111561693 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 111584842 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 111597311 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 111614637 . a aGAGAGCGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 111625108 . T C 9 . DP=18;AF1=0.5554;CI95=0.5,1;DP4=1,0,0,4;MQ=50;PV4=0.2,0.16,0.34,1 PL:DP:SP:GT:GQ 38,0,7:5:0:0/1:10 +chr10 111626566 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 111631665 . C G 99 . DP=30;AF1=1;CI95=1,1;DP4=0,0,0,28;MQ=48 PL:DP:SP:GT:GQ 157,84,0:28:0:1/1:99 +chr10 111637635 . A C 28.8 . DP=24;AF1=0.95;CI95=0.5,1;DP4=0,1,0,7;MQ=49;PV4=1,0.15,0.29,1 PL:DP:SP:GT:GQ 57,0,0:8:0:1/1:10 +chr10 111669924 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 111674728 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 111680936 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 111702614 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 111708449 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 111732687 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 111740597 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 111833350 . AGG AGGGG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 111844649 . AG AGCCTTTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 111872797 . T C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 111893380 . A C 5.49 . DP=6;AF1=0.5049;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.33,0,0.44 PL:DP:SP:GT:GQ 34,0,17:3:0:0/1:20 +chr10 111900606 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 111911140 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 111916800 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 111944344 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 111997570 . G C 4.86 . DP=2;AF1=0.5162;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,12:2:0:0/1:15 +chr10 112005364 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 112033629 . TGGGG TGGGGG 7.15 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr10 112035461 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 112044553 . GTTCTTCTT GTTCTTCTTCTT 48 . INDEL;DP=18;AF1=0.5718;CI95=0.5,1;DP4=1,0,4,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 85,0,6:5:0:0/1:8 +chr10 112044560 . TT TTCT 7.45 . INDEL;DP=16;AF1=0.9966;CI95=0.5,1;DP4=1,0,5,0;MQ=48;PV4=1,1,0.35,1 PL:DP:SP:GT:GQ 43,1,0:6:0:1/1:23 +chr10 112053827 . A T,G 7.59 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=48 PL:DP:SP:GT:GQ 47,15,37,9,0,37:3:0:1/1:49 +chr10 112057933 . ga gACACa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 112080389 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 112102733 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 112105047 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 112152551 . C A 11.1 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 +chr10 112175651 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 112194764 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 112196621 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 112208567 . A T 4.77 . DP=5;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=47;PV4=1,0.066,0.18,1 PL:DP:SP:GT:GQ 33,0,66:4:0:0/1:36 +chr10 112210419 . C T 3.54 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=2,1,1,0;MQ=46;PV4=1,1,0.32,1 PL:DP:SP:GT:GQ 31,0,107:4:0:0/1:34 +chr10 112224897 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 112237968 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 112240213 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 112247421 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 112328838 . C G 99 . DP=11;AF1=1;CI95=1,1;DP4=0,0,0,10;MQ=47 PL:DP:SP:GT:GQ 137,30,0:10:0:1/1:99 +chr10 112341866 . T G 3.54 . DP=19;AF1=0.4998;CI95=0.5,0.5;DP4=1,7,0,4;MQ=49;PV4=1,0.064,0.026,1 PL:DP:SP:GT:GQ 31,0,157:12:0:0/1:34 +chr10 112342436 . T C 3.01 . DP=8;AF1=0.4998;CI95=0.5,0.5;DP4=0,4,0,2;MQ=45;PV4=1,1,0.089,1 PL:DP:SP:GT:GQ 30,0,53:6:0:0/1:33 +chr10 112343862 . T C 5.46 . DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=2,2,0,2;MQ=48;PV4=0.47,0.25,0.2,1 PL:DP:SP:GT:GQ 34,0,111:6:3:0/1:37 +chr10 112356331 . G A 9.54 . DP=22;AF1=0.5025;CI95=0.5,0.5;DP4=0,1,0,3;MQ=49;PV4=1,0.086,0.26,1 PL:DP:SP:GT:GQ 39,0,20:4:0:0/1:23 +chr10 112361870 . A G 6.79 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr10 112369604 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 112379344 . a aACAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 112417401 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 112421401 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 112455980 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 112480037 . CC CCGATAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 112502668 . ACT ACTCCTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 112538242 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 112553788 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 112595939 . G T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 112598325 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 112605697 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 112614107 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 112617569 . T TTTTTGTTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 112626458 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 112627559 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 112635837 . G C 5.46 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,2,0;MQ=49;PV4=0.33,0.007,0,1 PL:DP:SP:GT:GQ 34,0,41:3:0:0/1:36 +chr10 112641053 . A G 62.6 . DP=27;AF1=0.5939;CI95=0.5,1;DP4=1,0,10,1;MQ=48;PV4=1,0.0027,0.18,1 PL:DP:SP:GT:GQ 92,0,5:12:0:0/1:7 +chr10 112642788 . GTAC G 16.6 . INDEL;DP=23;AF1=0.5;CI95=0.5,0.5;DP4=0,10,2,0;MQ=50;PV4=0.015,0.38,1,0.45 PL:DP:SP:GT:GQ 54,0,202:12:18:0/1:57 +chr10 112643304 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 112649241 . TAAAA TACAAAA,TA 9.94 . INDEL;DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 75,31,47,28,0,44:2:0:1/1:41 +chr10 112650488 . T A 21 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=48;PV4=1,1,0.0071,1 PL:DP:SP:GT:GQ 51,0,42:6:0:0/1:44 +chr10 112653979 . A C 10.4 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,4;MQ=48;PV4=1,0.12,0.01,1 PL:DP:SP:GT:GQ 40,0,71:7:0:0/1:43 +chr10 112656353 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 112691118 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 112712932 . t tCCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 112744121 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 112746685 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 112768043 . A ATGCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 112777854 . gg gGCAg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 112780188 . G GGGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 112812390 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 112822637 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 112852291 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 112857163 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 112874842 . TG TGAG 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 112880508 . A T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 112882272 . TCCC TCCCCGCCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 112907308 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 112926037 . c cTTAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 112936531 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 112967825 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 112975310 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 113067576 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 113092247 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 113129053 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 113179775 . T TAG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 113183131 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 113186877 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 113196093 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 113201148 . a aCTCACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 113208876 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 113254294 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 113258348 . T C 24 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=45 PL:DP:SP:GT:GQ 56,9,0:3:0:1/1:63 +chr10 113258350 . T G 9.31 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=46 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 113267802 . T TCAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 113279804 . TT TTTAGTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 113279885 . GC GCTCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 113306188 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 113306193 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 113306959 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 113308313 . t tCAGA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 113329209 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 113350144 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 113351087 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 113355748 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 113423100 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 113464341 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 113470161 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 113515152 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 113541501 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 113545357 . CCTGA C 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 113571492 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 113592119 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 113611329 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 113611331 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 113612458 . C CAGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 113616021 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 113645844 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 113648203 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 113702939 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 113711440 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 113725364 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 113726208 . G C 7.8 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 113728843 . A G 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 113784887 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 113816545 . GT GTGAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 113839550 . C A 10.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 113845658 . a aTGGCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 113849405 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 113855001 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 113862045 . C CTT 9.05 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr10 113896335 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 113917085 . T A 99 . DP=36;AF1=1;CI95=1,1;DP4=2,0,3,21;MQ=45;PV4=0.031,1,0.00033,1 PL:DP:SP:GT:GQ 255,48,0:26:15:1/1:99 +chr10 113920465 . G A 99 . DP=26;AF1=1;CI95=1,1;DP4=0,0,11,12;MQ=43 PL:DP:SP:GT:GQ 255,69,0:23:0:1/1:99 +chr10 113920652 . T C 89.1 . DP=16;AF1=1;CI95=0.5,1;DP4=0,1,1,9;MQ=48;PV4=1,1,0.14,0.018 PL:DP:SP:GT:GQ 122,18,0:11:0:1/1:90 +chr10 113921354 . G A 6.02 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr10 113923595 . C G 99 . DP=18;AF1=1;CI95=0.5,1;DP4=0,1,0,10;MQ=44;PV4=1,1,0.00087,1 PL:DP:SP:GT:GQ 182,9,0:11:0:1/1:63 +chr10 113940329 . T C 99 . DP=23;AF1=1;CI95=1,1;DP4=0,1,1,16;MQ=43;PV4=1,1,2.8e-15,1 PL:DP:SP:GT:GQ 255,38,0:18:0:1/1:99 +chr10 113952336 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 113954517 . A ATC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 113968051 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 113983037 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 113983322 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 113984694 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 114019381 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 114043532 . G C 3.54 . DP=13;AF1=0.4998;CI95=0.5,0.5;DP4=1,5,1,2;MQ=48;PV4=1,0.038,0.029,0.17 PL:DP:SP:GT:GQ 31,0,156:9:0:0/1:34 +chr10 114043541 . G A 14.2 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=2,2,0,3;MQ=48;PV4=0.43,0.28,0.13,1 PL:DP:SP:GT:GQ 44,0,86:7:4:0/1:47 +chr10 114043546 . A G 9.52 . DP=14;AF1=0.5002;CI95=0.5,0.5;DP4=1,1,0,3;MQ=49;PV4=0.4,0.39,0.14,0.39 PL:DP:SP:GT:GQ 39,0,30:5:0:0/1:32 +chr10 114053546 . C G 18.1 . DP=48;AF1=0.5001;CI95=0.5,0.5;DP4=1,1,4,1;MQ=50;PV4=1,0.011,0.29,1 PL:DP:SP:GT:GQ 48,0,33:7:0:0/1:36 +chr10 114054572 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 114059330 . TCTCTGTTTTCCTCTGTTTTCC TCTCTGTTTTCC 99 . INDEL;DP=36;AF1=0.5;CI95=0.5,0.5;DP4=3,8,0,9;MQ=50;PV4=0.22,1,1,1 PL:DP:SP:GT:GQ 198,0,255:20:7:0/1:99 +chr10 114059340 . CC CCGTC 8.18 . INDEL;DP=21;AF1=0.5;CI95=0.5,0.5;DP4=2,12,0,2;MQ=50;PV4=1,1,1,0.084 PL:DP:SP:GT:GQ 45,0,255:16:0:0/1:48 +chr10 114081026 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 114090601 . t tTGG 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 114101409 . T A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 114135947 . A C 9.31 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=45 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 114154626 . A G 10.4 . DP=18;AF1=0.5002;CI95=0.5,0.5;DP4=2,0,3,0;MQ=48;PV4=1,0.12,0.12,1 PL:DP:SP:GT:GQ 40,0,31:5:0:0/1:33 +chr10 114154627 . A C 6.2 . DP=17;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,3,0;MQ=48;PV4=1,1,0.15,0.43 PL:DP:SP:GT:GQ 35,0,47:7:0:0/1:38 +chr10 114154628 . A C,T 3.98 . DP=17;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=48 PL:DP:SP:GT:GQ 46,19,32,13,0,32:3:0:1/1:49 +chr10 114158640 . A T 18.1 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=2,1,4,0;MQ=48;PV4=0.43,0.34,0.2,1 PL:DP:SP:GT:GQ 48,0,47:7:0:0/1:47 +chr10 114176776 . T A 18.1 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=1,3,0,4;MQ=47;PV4=1,0.029,0.29,1 PL:DP:SP:GT:GQ 48,0,120:8:0:0/1:51 +chr10 114176777 . C G 6.2 . DP=14;AF1=0.4999;CI95=0.5,0.5;DP4=1,2,0,2;MQ=48;PV4=1,0.2,0.047,1 PL:DP:SP:GT:GQ 35,0,99:5:0:0/1:38 +chr10 114186624 . G A 39 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=0,19,1,10;MQ=49;PV4=0.37,4.2e-11,0.4,1 PL:DP:SP:GT:GQ 69,0,241:30:0:0/1:72 +chr10 114192285 . G A 99 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=2,12,2,8;MQ=47;PV4=1,1,1.2e-10,1 PL:DP:SP:GT:GQ 217,0,243:24:0:0/1:99 +chr10 114198852 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 114202219 . C T 18.8 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 50,6,0:2:0:1/1:49 +chr10 114205074 . C T 13.2 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=3,11,1,4;MQ=49;PV4=1,0.3,0.03,1 PL:DP:SP:GT:GQ 43,0,174:19:0:0/1:46 +chr10 114224256 . A C,G 21 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=49 PL:DP:SP:GT:GQ 55,11,50,2,0,50:4:0:1/1:63 +chr10 114224502 . C G 11.3 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 43,9,0:3:0:1/1:63 +chr10 114236467 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 114270461 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 114292116 . TG TGCGCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 114302108 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 114306319 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 114318954 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 114335493 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 114343577 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 114427902 . A G 5.46 . DP=3;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,1,0;MQ=48;PV4=1,1,0,0.45 PL:DP:SP:GT:GQ 34,0,67:3:0:0/1:37 +chr10 114430314 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 114433897 . A C 4.77 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 114445068 . tc tCCCTTTGCc 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 114471375 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 114478105 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 114478388 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 114485252 . gt gTATCTCTCt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 114573909 . G T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 114581094 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 114589848 . C G 4.77 . DP=2;AF1=0.5004;CI95=0.5,0.5;DP4=0,1,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,27:2:0:0/1:29 +chr10 114599793 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 114627535 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 114646332 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 114656706 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 114662807 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 114673922 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 114677753 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 114743885 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 114750859 . G A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 114761853 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 114771471 . A C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 114804759 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 114828193 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 114829946 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 114852852 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 114876902 . AAAGAA AAA 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 114900576 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 114902624 . CAA CAAGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 114918612 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 114919608 . ttctctctctctctctctc ttctctctctctctctc 7.35 . INDEL;DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 114927156 . C A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 114927193 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 114937125 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 114959108 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 114968268 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 114983630 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 115020595 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 115023002 . tc tCTGAc 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 115032753 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 115036436 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 115046263 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 115046480 . T TGCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 115060312 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 115076280 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 115080183 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 115089716 . cact c 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 115099463 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 115103979 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 115112426 . A T 3.02 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 115112973 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 115114808 . AGGG A 4.42 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,1;MQ=50;PV4=1,0.21,1,1 PL:DP:SP:GT:GQ 40,0,91:3:0:0/1:43 +chr10 115157511 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 115163870 . T TGG 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 115168182 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 115180392 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 115187722 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 115188263 . G GTCTGTTCT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 115192395 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 115197087 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 115212035 . GGA GGAGA 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 115212106 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 115218910 . CCT CCTCTCT 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 115220091 . A AGACGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 115236813 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 115238836 . C A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 115242531 . T G 63.1 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,3,3;MQ=49 PL:DP:SP:GT:GQ 96,18,0:6:0:1/1:90 +chr10 115242720 . T A 21.5 . DP=17;AF1=0.8277;CI95=0.5,1;DP4=1,0,2,1;MQ=36;PV4=1,1,0.28,0.064 PL:DP:SP:GT:GQ 50,0,1:4:0:1/1:5 +chr10 115253359 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 115279410 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 115289290 . TTG TTGTG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 115299598 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 115334124 . C T 99 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=2,11,5,11;MQ=49;PV4=0.41,1.2e-12,0.0027,0.38 PL:DP:SP:GT:GQ 155,0,255:29:4:0/1:99 +chr10 115338305 . T C 10.4 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=14,0,6,0;MQ=50;PV4=1,3.7e-13,1.4e-05,1 PL:DP:SP:GT:GQ 40,0,235:20:0:0/1:43 +chr10 115338615 . A G 99 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,7;MQ=47;PV4=1,0.13,8.2e-06,1 PL:DP:SP:GT:GQ 143,0,181:15:0:0/1:99 +chr10 115341545 . G C 38 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=3,0,5,0;MQ=49;PV4=1,1,0.23,1 PL:DP:SP:GT:GQ 68,0,37:8:0:0/1:40 +chr10 115341846 . G A 31 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=1,3,1,4;MQ=49;PV4=1,0.013,0.045,1 PL:DP:SP:GT:GQ 61,0,109:9:0:0/1:64 +chr10 115342904 . G T 4.13 . DP=8;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=48;PV4=1,0.32,0.15,1 PL:DP:SP:GT:GQ 32,0,38:4:0:0/1:34 +chr10 115343803 . C T 24 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=3,0,2,0;MQ=48;PV4=1,0.063,0.00021,1 PL:DP:SP:GT:GQ 54,0,108:5:0:0/1:57 +chr10 115348726 . GA G 87.5 . INDEL;DP=24;AF1=0.5;CI95=0.5,0.5;DP4=7,0,14,0;MQ=50;PV4=1,4.4e-18,1,0.46 PL:DP:SP:GT:GQ 125,0,126:21:0:0/1:99 +chr10 115349397 . AGGGG AGGG 99 . INDEL;DP=26;AF1=1;CI95=0.5,1;DP4=2,0,15,3;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 147,15,0:20:0:1/1:75 +chr10 115365669 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 115370274 . T C 99 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=2,9,2,8;MQ=47;PV4=1,6.9e-08,7.5e-09,0.17 PL:DP:SP:GT:GQ 216,0,255:21:0:0/1:99 +chr10 115372275 . T G 14.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 46,6,0:2:0:1/1:49 +chr10 115373851 . T C 95.1 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=45 PL:DP:SP:GT:GQ 128,18,0:6:0:1/1:90 +chr10 115377190 . T G 59.8 . DP=13;AF1=0.6243;CI95=0.5,1;DP4=1,0,6,0;MQ=44;PV4=1,1,0.11,0.016 PL:DP:SP:GT:GQ 89,0,4:7:0:0/1:6 +chr10 115377194 . G C 4.13 . DP=14;AF1=0.4998;CI95=0.5,0.5;DP4=3,0,2,0;MQ=45;PV4=1,0.23,0.0018,1 PL:DP:SP:GT:GQ 32,0,67:5:0:0/1:35 +chr10 115380675 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 115389267 . G A 46 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=4,0,3,0;MQ=47;PV4=1,0.31,0,1 PL:DP:SP:GT:GQ 76,0,111:7:0:0/1:79 +chr10 115393948 . C T 6.98 . DP=27;AF1=0.4999;CI95=0.5,0.5;DP4=4,8,0,4;MQ=49;PV4=0.52,0.0079,0.00061,0.31 PL:DP:SP:GT:GQ 36,0,255:16:3:0/1:39 +chr10 115401264 . A G 21 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,3;MQ=49;PV4=1,0.05,0.0017,1 PL:DP:SP:GT:GQ 51,0,184:11:0:0/1:54 +chr10 115405664 . C T 99 . DP=43;AF1=0.5;CI95=0.5,0.5;DP4=17,8,6,7;MQ=48;PV4=0.3,0.00031,1.7e-10,1 PL:DP:SP:GT:GQ 201,0,255:38:5:0/1:99 +chr10 115407346 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 115410275 . T G 18.1 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=7,4,0,7;MQ=49;PV4=0.013,0.0017,0.0036,1 PL:DP:SP:GT:GQ 48,0,255:18:19:0/1:51 +chr10 115411614 . A G 99 . DP=46;AF1=1;CI95=1,1;DP4=0,1,12,25;MQ=48;PV4=1,0.019,0.24,1 PL:DP:SP:GT:GQ 227,84,0:38:0:1/1:99 +chr10 115412686 . G A 14.9 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=46 PL:DP:SP:GT:GQ 46,6,0:2:0:1/1:49 +chr10 115412793 . A G 16.1 . DP=40;AF1=0.5;CI95=0.5,0.5;DP4=0,21,0,17;MQ=50;PV4=1,4.8e-15,0.071,0.38 PL:DP:SP:GT:GQ 46,0,243:38:0:0/1:49 +chr10 115413901 . T C 64 . DP=46;AF1=0.5;CI95=0.5,0.5;DP4=0,17,0,26;MQ=49;PV4=1,4.3e-19,0.025,1 PL:DP:SP:GT:GQ 94,0,222:43:0:0/1:97 +chr10 115417289 . G A 43.3 . DP=23;AF1=1;CI95=0.5,1;DP4=0,0,3,2;MQ=49 PL:DP:SP:GT:GQ 76,15,0:5:0:1/1:75 +chr10 115418160 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 115423747 . G A 4.77 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 115428290 . C A 16.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=46 PL:DP:SP:GT:GQ 48,6,0:2:0:1/1:49 +chr10 115451495 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 115451781 . C T 30 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=12,7,3,3;MQ=48;PV4=0.65,0.00063,0.16,1 PL:DP:SP:GT:GQ 60,0,255:25:2:0/1:63 +chr10 115477101 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 115481390 . T A 5.46 . DP=25;AF1=0.4999;CI95=0.5,0.5;DP4=10,2,4,0;MQ=49;PV4=1,0.01,0.02,0.48 PL:DP:SP:GT:GQ 34,0,255:16:0:0/1:37 +chr10 115481816 . gag gAGAATag 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 115491283 . A AAGACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 115506116 . C T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 115512353 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 115526377 . T TACACA 5.08 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,90:3:0:0/1:44 +chr10 115526382 . AAAG A 5.08 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,1,0;MQ=50;PV4=0.33,0.41,1,0.48 PL:DP:SP:GT:GQ 41,0,74:3:0:0/1:44 +chr10 115540311 . T G 6.2 . DP=11;AF1=0.4999;CI95=0.5,0.5;DP4=6,0,2,0;MQ=48;PV4=1,0.26,0.00073,1 PL:DP:SP:GT:GQ 35,0,127:8:0:0/1:38 +chr10 115540411 . T C 12.3 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=2,7,0,6;MQ=50;PV4=0.49,0.0048,0.058,1 PL:DP:SP:GT:GQ 42,0,205:15:3:0/1:45 +chr10 115599328 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 115601169 . A C 5.46 . DP=15;AF1=0.4999;CI95=0.5,0.5;DP4=4,1,3,0;MQ=47;PV4=1,0.19,0.015,1 PL:DP:SP:GT:GQ 34,0,105:8:0:0/1:37 +chr10 115601175 . A C 40 . DP=13;AF1=0.504;CI95=0.5,0.5;DP4=0,1,5,0;MQ=46;PV4=0.17,0.027,0.19,0.022 PL:DP:SP:GT:GQ 70,0,18:6:0:0/1:21 +chr10 115609915 . C G 70.8 . DP=50;AF1=1;CI95=0.5,1;DP4=1,0,3,4;MQ=49;PV4=1,1,0.24,1 PL:DP:SP:GT:GQ 102,6,0:8:0:1/1:49 +chr10 115631539 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 115668149 . A G 99 . DP=53;AF1=0.5;CI95=0.5,0.5;DP4=19,16,11,6;MQ=48;PV4=0.56,0.0014,2.4e-17,1 PL:DP:SP:GT:GQ 255,0,255:52:3:0/1:99 +chr10 115677961 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 115713773 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 115736885 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 115736919 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 115755864 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 115762363 . AA AAGTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 115779835 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 115787815 . C CGCGCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 115787894 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 115803589 . G GTTTC 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 115818647 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 115837051 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 115839413 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 115843122 . TCT TCTACT 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 115868269 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 115910768 . A C 22 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 54,9,0:3:0:1/1:63 +chr10 115914227 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 115935597 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 115954429 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 115963509 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 115966769 . A ATGT 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 115986903 . ATGT A 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,0;MQ=50;PV4=1,0.48,1,1 PL:DP:SP:GT:GQ 38,0,59:3:0:0/1:41 +chr10 115987932 . T C 3.54 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,44:2:0:0/1:34 +chr10 115988190 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 115993655 . AC ACCTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 116006551 . T C,G 3.41 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 44,18,31,12,0,31:3:0:1/1:49 +chr10 116031358 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 116032746 . G A 59 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,8;MQ=48;PV4=1,5e-08,0.0035,1 PL:DP:SP:GT:GQ 89,0,192:16:0:0/1:92 +chr10 116037895 . C T 31 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=45 PL:DP:SP:GT:GQ 63,9,0:3:0:1/1:63 +chr10 116044587 . C T 77.1 . DP=7;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=48 PL:DP:SP:GT:GQ 110,21,0:7:0:1/1:84 +chr10 116044697 . G T 4.13 . DP=18;AF1=0.4998;CI95=0.5,0.5;DP4=1,8,0,4;MQ=50;PV4=1,0.041,0.046,1 PL:DP:SP:GT:GQ 32,0,178:13:0:0/1:35 +chr10 116047731 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 116048648 . G T 9.52 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=5,0,3,0;MQ=49;PV4=1,0.085,0.0045,1 PL:DP:SP:GT:GQ 39,0,110:8:0:0/1:42 +chr10 116058933 . G A 54.3 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=45 PL:DP:SP:GT:GQ 87,15,0:5:0:1/1:75 +chr10 116060194 . AGG AGGG 84 . INDEL;DP=6;AF1=0.5718;CI95=0.5,1;DP4=0,1,1,4;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 121,0,6:6:0:0/1:8 +chr10 116060387 . T C 63.1 . DP=42;AF1=1;CI95=1,1;DP4=0,0,4,3;MQ=50 PL:DP:SP:GT:GQ 96,21,0:7:0:1/1:84 +chr10 116068176 . A G 25 . DP=30;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=49 PL:DP:SP:GT:GQ 57,9,0:3:0:1/1:63 +chr10 116073696 . C T 99 . DP=34;AF1=1;CI95=1,1;DP4=0,0,13,17;MQ=47 PL:DP:SP:GT:GQ 255,90,0:30:0:1/1:99 +chr10 116075265 . GCCCC GCCCCCC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 116089908 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 116099323 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 116109745 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 116112383 . A AACC 7.38 . INDEL;DP=2;AF1=0.504;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,18:2:0:0/1:21 +chr10 116138606 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 116161735 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 116171331 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 116199010 . C G 76 . DP=38;AF1=0.5;CI95=0.5,0.5;DP4=3,8,0,13;MQ=49;PV4=0.082,0.0022,0.0023,1 PL:DP:SP:GT:GQ 106,0,238:24:11:0/1:99 +chr10 116213114 . G C 21 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=5,0,3,0;MQ=48;PV4=1,1,0.067,1 PL:DP:SP:GT:GQ 51,0,51:8:0:0/1:51 +chr10 116234100 . ttc tTCCGCAtc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 116280978 . T C 3.54 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,44:2:0:0/1:34 +chr10 116297626 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 116300178 . ac aCTTc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 116307504 . A G 99 . DP=26;AF1=1;CI95=1,1;DP4=0,0,9,14;MQ=44 PL:DP:SP:GT:GQ 255,69,0:23:0:1/1:99 +chr10 116335246 . G A 12.3 . DP=53;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,2;MQ=49;PV4=1,0.084,0.33,1 PL:DP:SP:GT:GQ 42,0,59:5:0:0/1:45 +chr10 116396884 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 116404479 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 116407131 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 116423752 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 116425524 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 116493347 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 116517487 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 116563615 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 116569158 . CT CTCTAT 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=2,0,0,1;MQ=50;PV4=0.33,0.17,1,0.48 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr10 116575146 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 116606173 . C CT 62.5 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,4;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 100,0,106:9:0:0/1:99 +chr10 116606215 . CT CTAT 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,43:2:0:0/1:43 +chr10 116606806 . A G 9.53 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 116621154 . C A 40 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,10,2,2;MQ=49;PV4=0.066,0.0082,0.0019,1 PL:DP:SP:GT:GQ 70,0,204:14:12:0/1:73 +chr10 116655005 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 116698116 . C T 6.79 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=37 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr10 116702545 . T G 71.1 . DP=16;AF1=1;CI95=0.5,1;DP4=0,1,0,7;MQ=46;PV4=1,1,0.11,1 PL:DP:SP:GT:GQ 102,5,0:8:0:1/1:46 +chr10 116730069 . AA AAGTGGA 7.42 . INDEL;DP=2;AF1=0.5101;CI95=0.5,0.5;DP4=1,0,1,0;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,14:2:0:0/1:17 +chr10 116735164 . T G 6.2 . DP=44;AF1=0.4999;CI95=0.5,0.5;DP4=7,5,0,5;MQ=50;PV4=0.044,0.034,0.12,0.39 PL:DP:SP:GT:GQ 35,0,230:17:14:0/1:38 +chr10 116759640 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 116776841 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 116920043 . T TACGACTCGAC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 116920180 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 116927418 . AAA AAACCGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 116930157 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 116931101 . CT CTTT 11.8 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 116996327 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 117016432 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 117021198 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 117047926 . g gTA 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 117069500 . tc tCCTTCc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 117075175 . G A 84 . DP=28;AF1=1;CI95=1,1;DP4=0,0,7,2;MQ=49 PL:DP:SP:GT:GQ 117,27,0:9:0:1/1:99 +chr10 117153278 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 117208738 . C A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 117221410 . T C 15.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=44 PL:DP:SP:GT:GQ 47,6,0:2:0:1/1:49 +chr10 117237821 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 117299902 . AG AGTGGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 117300380 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 117307718 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 117308924 . T G 23 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=4,0,4,0;MQ=46;PV4=1,0.16,0.1,1 PL:DP:SP:GT:GQ 53,0,70:8:0:0/1:56 +chr10 117308927 . A C 3.01 . DP=13;AF1=0.4998;CI95=0.5,0.5;DP4=3,0,2,0;MQ=47;PV4=1,1,0.4,1 PL:DP:SP:GT:GQ 30,0,41:5:0:0/1:33 +chr10 117357016 . TC TCCAGACCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 117371297 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 117445422 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 117505614 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 117533317 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 117541823 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 117549683 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 117572486 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 117590110 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 117607333 . T G 7.59 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 117657274 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 117660127 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 117678484 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 117694729 . AACA AACACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 117704134 . AGCAAGC AGGGCAAGC 3.25 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=2,1,1,0;MQ=50;PV4=1,1,1,0.37 PL:DP:SP:GT:GQ 38,0,61:4:0:0/1:41 +chr10 117730791 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 117732288 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 117751977 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 117799114 . TT TTCGCACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 117849353 . T C 66 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=1,3,0,7;MQ=48;PV4=0.36,0.043,0.046,1 PL:DP:SP:GT:GQ 96,0,104:11:0:0/1:98 +chr10 117884950 . G A 99 . DP=17;AF1=1;CI95=1,1;DP4=0,0,6,9;MQ=43 PL:DP:SP:GT:GQ 255,45,0:15:0:1/1:99 +chr10 117899581 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 117901056 . G T 3.56 . DP=2;AF1=0.503;CI95=0.5,0.5;DP4=1,0,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,19:2:0:0/1:22 +chr10 117907887 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 117909688 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 117917269 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 117919206 . T C 4.13 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,44:2:0:0/1:35 +chr10 117925239 . AG AGTGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 117936218 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 117945908 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 117957213 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 117972272 . gt gTAGGAGTt 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 117999984 . A ATCCCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 118023499 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 118053967 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 118057049 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 118058977 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 118117194 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 118121048 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 118170436 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 118183631 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 118202993 . AAT AATCTCAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 118217671 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 118220500 . T G 18.1 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=6,2,0,6;MQ=49;PV4=0.0097,0.0071,1,0.22 PL:DP:SP:GT:GQ 48,0,180:14:20:0/1:51 +chr10 118235523 . T G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 118256972 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 118266701 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 118274689 . ag aGg 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 118288893 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 118291676 . cct cCTCGGGct 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 118304680 . AAATTA AA 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 118313265 . T C 99 . DP=20;AF1=1;CI95=1,1;DP4=0,0,13,3;MQ=48 PL:DP:SP:GT:GQ 169,48,0:16:0:1/1:99 +chr10 118356002 . T C 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 118357176 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 118357490 . C T 99 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=0,5,12,3;MQ=47;PV4=0.0036,0.27,1,1 PL:DP:SP:GT:GQ 138,0,47:20:24:0/1:50 +chr10 118357491 . G A 3.01 . DP=34;AF1=0.4997;CI95=0.5,0.5;DP4=15,3,0,4;MQ=47;PV4=0.0048,0.38,0.002,0.3 PL:DP:SP:GT:GQ 30,0,201:22:23:0/1:33 +chr10 118359548 . T C 21.1 . DP=25;AF1=0.5064;CI95=0.5,0.5;DP4=1,1,2,2;MQ=50;PV4=1,1,0.27,1 PL:DP:SP:GT:GQ 51,0,16:6:0:0/1:19 +chr10 118363642 . T C 99 . DP=24;AF1=1;CI95=0.5,1;DP4=1,1,0,18;MQ=46;PV4=0.1,1,0.0085,1 PL:DP:SP:GT:GQ 133,10,0:20:0:1/1:60 +chr10 118363664 . T G 3.01 . DP=18;AF1=0.4997;CI95=0.5,0.5;DP4=0,2,0,3;MQ=45;PV4=1,0.0042,1,0.23 PL:DP:SP:GT:GQ 30,0,65:5:0:0/1:33 +chr10 118364818 . G T 70 . DP=17;AF1=1;CI95=1,1;DP4=0,0,13,0;MQ=47 PL:DP:SP:GT:GQ 103,39,0:13:0:1/1:99 +chr10 118364842 . A G 70 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=15,0,12,0;MQ=49;PV4=1,6.8e-11,0.00086,0.27 PL:DP:SP:GT:GQ 100,0,234:27:0:0/1:99 +chr10 118364967 . G C 99 . DP=57;AF1=0.5;CI95=0.5,0.5;DP4=8,23,7,13;MQ=49;PV4=0.54,2e-14,4.5e-09,1 PL:DP:SP:GT:GQ 187,0,255:51:3:0/1:99 +chr10 118378048 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 118378125 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 118378457 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 118378468 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 118393909 . T C 3.55 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 118414467 . t tGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 118436068 . G T 4.75 . DP=28;AF1=0.667;CI95=0.5,1;DP4=0,1,0,3;MQ=50;PV4=1,1,0.33,1 PL:DP:SP:GT:GQ 32,0,3:4:0:0/1:5 +chr10 118438733 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 118438909 . A C 13 . DP=13;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr10 118443395 . T C 17.1 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=3,6,0,5;MQ=49;PV4=0.26,0.039,0.023,1 PL:DP:SP:GT:GQ 47,0,212:14:6:0/1:50 +chr10 118445257 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 118448890 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 118451541 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 118484593 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 118509599 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 118521320 . G A 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 118529231 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 118531873 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 118557029 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 118601769 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 118621280 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 118637994 . C CCCACCCGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 118647855 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 118736892 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 118792743 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 118817263 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 118824486 . T TAG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 118869689 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 118896087 . CGG CGCAAGG 3.25 . INDEL;DP=9;AF1=0.5;CI95=0.5,0.5;DP4=1,2,1,0;MQ=50;PV4=1,1,1,0.17 PL:DP:SP:GT:GQ 38,0,84:4:0:0/1:41 +chr10 118899706 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 118942229 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 118960835 . T TTCCAA 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,3,1,0;MQ=50;PV4=0.25,0.21,1,1 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr10 118991318 . T TG 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 119003845 . CAAA CA 68.5 . INDEL;DP=13;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,4;MQ=50;PV4=1,3.2e-07,1,0.26 PL:DP:SP:GT:GQ 106,0,189:11:0:0/1:99 +chr10 119012909 . G A 4.77 . DP=29;AF1=0.4999;CI95=0.5,0.5;DP4=8,1,7,0;MQ=48;PV4=1,0.26,0.14,0.31 PL:DP:SP:GT:GQ 33,0,113:16:0:0/1:36 +chr10 119014023 . C T 18 . DP=31;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 50,9,0:3:0:1/1:63 +chr10 119014929 . C T 99 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=8,4,6,7;MQ=47;PV4=0.43,0.1,1,1 PL:DP:SP:GT:GQ 161,0,178:25:4:0/1:99 +chr10 119014931 . C T 73 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=9,7,8,3;MQ=46;PV4=0.45,0.029,0.017,1 PL:DP:SP:GT:GQ 103,0,230:27:3:0/1:99 +chr10 119014948 . C A 99 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=8,3,8,3;MQ=45;PV4=1,0.0042,0.0079,1 PL:DP:SP:GT:GQ 220,0,255:22:0:0/1:99 +chr10 119018668 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 119025118 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 119026401 . T C 16.9 . DP=20;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=48 PL:DP:SP:GT:GQ 48,6,0:2:0:1/1:49 +chr10 119029374 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 119029744 . G A 99 . DP=54;AF1=1;CI95=1,1;DP4=0,1,14,25;MQ=47;PV4=1,1,0.42,1 PL:DP:SP:GT:GQ 255,95,0:40:0:1/1:99 +chr10 119049578 . ATT ATTCTT 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 119108726 . ca cACGTa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 119111608 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 119119775 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119160464 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119179445 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119195875 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 119209227 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 119234335 . ctctt ct 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 119248444 . T TACTAGCAACAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 119271618 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 119283045 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119285708 . TT TTAAAGTAAAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 119286668 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119293289 . TC TCGAAGCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 119297036 . CGTG CGTGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 119305236 . T G 5.46 . DP=22;AF1=0.4999;CI95=0.5,0.5;DP4=11,4,0,4;MQ=49;PV4=0.018,0.028,0.0015,1 PL:DP:SP:GT:GQ 34,0,255:19:17:0/1:37 +chr10 119308499 . C CCACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 119332230 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119347611 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 119349894 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 119351470 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 119353206 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 119355362 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 119360304 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 119364562 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119409515 . T TGGCA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 119435099 . C CTG 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 119441111 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 119442318 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119462703 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119466965 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 119467136 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119495731 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119513733 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 119539093 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 119551712 . T TAC 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 119556855 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119565191 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119582199 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119611324 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 119665330 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 119677192 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 119684024 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119684108 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 119686430 . C T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 119693248 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119701826 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 119737659 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119768551 . C T 99 . DP=37;AF1=1;CI95=1,1;DP4=1,1,23,8;MQ=49;PV4=0.48,0.3,0.11,1 PL:DP:SP:GT:GQ 204,48,0:33:3:1/1:99 +chr10 119811722 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 119886853 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 119907135 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 119911260 . G T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 119917855 . CCATT C 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 119933566 . G GCTTTT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 119939411 . t tCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 119950451 . A T 3.54 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,0,1;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,44:2:0:0/1:34 +chr10 119994590 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 119998713 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 120003670 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 120011029 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 120018437 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 120024366 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 120028083 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 120034049 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 120038516 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 120041888 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 120056166 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 120082522 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 120095037 . GA G 32.5 . INDEL;DP=5;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,3,0;MQ=50;PV4=1,0.0076,1,0.059 PL:DP:SP:GT:GQ 70,0,28:4:0:0/1:31 +chr10 120168560 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 120174516 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 120174595 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 120196105 . TT TTTCTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 120209553 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 120225282 . TG TGAATAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 120237204 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 120245162 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 120271756 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 120317649 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 120332647 . A T 4.13 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,44:2:0:0/1:35 +chr10 120401343 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 120403764 . G C 6.98 . DP=5;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,2;MQ=48;PV4=1,0.24,0.24,0.2 PL:DP:SP:GT:GQ 36,0,59:4:0:0/1:39 +chr10 120413215 . ca cAGa 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 120429864 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 120440360 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 120446033 . C A 16.1 . DP=10;AF1=0.5032;CI95=0.5,0.5;DP4=1,0,3,0;MQ=44;PV4=1,0.052,0.15,0.17 PL:DP:SP:GT:GQ 46,0,19:4:0:0/1:22 +chr10 120446040 . A G 8.64 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=5,0,2,0;MQ=48;PV4=1,0.09,0.03,1 PL:DP:SP:GT:GQ 38,0,146:7:0:0/1:41 +chr10 120489864 . A G 6.98 . DP=33;AF1=0.4999;CI95=0.5,0.5;DP4=3,16,0,5;MQ=49;PV4=1,0.014,2.3e-09,1 PL:DP:SP:GT:GQ 36,0,255:24:0:0/1:39 +chr10 120489874 . T A 18.1 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=2,6,0,4;MQ=48;PV4=0.52,0.23,0.17,1 PL:DP:SP:GT:GQ 48,0,154:12:3:0/1:51 +chr10 120495072 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 120506395 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 120513992 . C A 4.13 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,1,0;MQ=48;PV4=1,0.14,0,1 PL:DP:SP:GT:GQ 32,0,83:3:0:0/1:35 +chr10 120518283 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 120536857 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 120539031 . C A 11.1 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 +chr10 120571971 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 120577322 . T G 5.46 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,44:2:0:0/1:37 +chr10 120583399 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 120593641 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 120604691 . A T 9.31 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 120612005 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 120616727 . A ATCTGTGCTG 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=48 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 120625669 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 120654433 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 120690653 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 120692430 . A T 3.01 . DP=6;AF1=0.4998;CI95=0.5,0.5;DP4=3,0,1,0;MQ=48;PV4=1,1,0.0049,1 PL:DP:SP:GT:GQ 30,0,42:4:0:0/1:33 +chr10 120692742 . G A 29 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,2,0;MQ=45;PV4=0.33,0.15,0,1 PL:DP:SP:GT:GQ 59,0,41:3:0:0/1:44 +chr10 120692771 . T C 43 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,9,0,4;MQ=48;PV4=1,4.5e-05,5.6e-12,0.032 PL:DP:SP:GT:GQ 73,0,208:13:0:0/1:76 +chr10 120735107 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 120750197 . t tCCCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 120761509 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 120809325 . G T 19.1 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=5,2,2,5;MQ=49;PV4=0.29,0.073,0.056,1 PL:DP:SP:GT:GQ 49,0,130:14:5:0/1:52 +chr10 120810623 . A C 19.6 . DP=17;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=50 PL:DP:SP:GT:GQ 52,12,0:4:0:1/1:72 +chr10 120817450 . A G 34.3 . DP=28;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=49 PL:DP:SP:GT:GQ 67,15,0:5:0:1/1:75 +chr10 120818609 . C T 26.3 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=50 PL:DP:SP:GT:GQ 59,15,0:5:0:1/1:75 +chr10 120820224 . C A 7.59 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 120828969 . A G 99 . DP=14;AF1=1;CI95=0.5,1;DP4=1,0,10,0;MQ=44;PV4=1,1,3.2e-09,1 PL:DP:SP:GT:GQ 188,11,0:11:0:1/1:66 +chr10 120832596 . T G 6.25 . DP=4;AF1=0.508;CI95=0.5,0.5;DP4=0,1,0,2;MQ=49;PV4=1,1,0,0.27 PL:DP:SP:GT:GQ 35,0,15:3:0:0/1:18 +chr10 120837837 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 120846962 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 120852551 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 120856685 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 120889022 . T C 31 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=47 PL:DP:SP:GT:GQ 63,9,0:3:0:1/1:63 +chr10 120893128 . ggtgg gGTGGTgtgg 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 120905976 . cgtgtgtgtgt cGTgtgtgtgtgt 11.7 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=35 PL:DP:SP:GT:GQ 51,9,0:3:0:1/1:63 +chr10 120917269 . A T 4.61 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=50 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr10 120917445 . G A 99 . DP=55;AF1=1;CI95=1,1;DP4=0,0,7,15;MQ=48 PL:DP:SP:GT:GQ 214,66,0:22:0:1/1:99 +chr10 120919179 . G A 82 . DP=28;AF1=1;CI95=1,1;DP4=0,0,14,0;MQ=49 PL:DP:SP:GT:GQ 115,42,0:14:0:1/1:99 +chr10 120919246 . T C 99 . DP=32;AF1=1;CI95=1,1;DP4=0,1,10,17;MQ=50;PV4=1,7.6e-08,0.33,1 PL:DP:SP:GT:GQ 164,51,0:28:0:1/1:99 +chr10 120920588 . T C 7.59 . DP=26;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 120925086 . A C 4.13 . DP=21;AF1=0.4998;CI95=0.5,0.5;DP4=6,2,3,0;MQ=48;PV4=1,0.18,0.33,1 PL:DP:SP:GT:GQ 32,0,167:11:0:0/1:35 +chr10 120925121 . C A 6.98 . DP=13;AF1=0.4999;CI95=0.5,0.5;DP4=1,3,0,3;MQ=46;PV4=1,0.12,1,1 PL:DP:SP:GT:GQ 36,0,112:7:0:0/1:39 +chr10 120928092 . A G 22 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,4;MQ=49;PV4=1,1,0.071,1 PL:DP:SP:GT:GQ 52,0,54:8:0:0/1:53 +chr10 120932228 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 120933324 . G A 99 . DP=9;AF1=1;CI95=1,1;DP4=0,0,1,6;MQ=45 PL:DP:SP:GT:GQ 132,21,0:7:0:1/1:84 +chr10 120933676 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 120933901 . T C 38 . DP=17;AF1=1;CI95=1,1;DP4=1,0,14,0;MQ=50;PV4=1,0.14,0.4,1 PL:DP:SP:GT:GQ 71,25,0:15:0:1/1:99 +chr10 120950998 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 120964311 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 120969061 . TGG TGGTCTGGG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 120977630 . A ACAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 121005831 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 121025018 . gag gAGATCACTGTAag 10.8 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=48 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 121049032 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 121069218 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 121102990 . T A 6.02 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr10 121118443 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 121145887 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 121147387 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 121182314 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 121190958 . G C 3.54 . DP=10;AF1=0.4998;CI95=0.5,0.5;DP4=2,1,2,0;MQ=46;PV4=1,0.045,0.11,0.37 PL:DP:SP:GT:GQ 31,0,98:5:0:0/1:34 +chr10 121199189 . T C 86 . DP=18;AF1=1;CI95=1,1;DP4=0,0,14,0;MQ=49 PL:DP:SP:GT:GQ 119,42,0:14:0:1/1:99 +chr10 121199437 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 121201626 . T C 99 . DP=23;AF1=1;CI95=1,1;DP4=0,0,0,19;MQ=46 PL:DP:SP:GT:GQ 150,57,0:19:0:1/1:99 +chr10 121207895 . G A 15.9 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 47,6,0:2:0:1/1:49 +chr10 121208381 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 121211914 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 121238829 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 121249181 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 121268793 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 121274955 . AA AAGTAGCA 5.08 . INDEL;DP=9;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,45:3:0:0/1:43 +chr10 121274957 . T G 3.01 . DP=8;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,2,0;MQ=48;PV4=1,0.22,0.24,1 PL:DP:SP:GT:GQ 30,0,39:4:0:0/1:32 +chr10 121287019 . G A 99 . DP=25;AF1=1;CI95=1,1;DP4=0,0,0,16;MQ=44 PL:DP:SP:GT:GQ 199,48,0:16:0:1/1:99 +chr10 121306267 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 121328888 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 121329664 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 121336043 . G T 12.3 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=46;PV4=1,0.42,0.13,1 PL:DP:SP:GT:GQ 42,0,48:4:0:0/1:44 +chr10 121338401 . T A 61.3 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=47 PL:DP:SP:GT:GQ 94,15,0:5:0:1/1:75 +chr10 121343632 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 121352292 . c cTTTTAGGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 121398094 . A G 6.98 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,44:2:0:0/1:38 +chr10 121436362 . A G 99 . DP=43;AF1=0.5;CI95=0.5,0.5;DP4=8,14,11,4;MQ=49;PV4=0.045,1.6e-06,1.5e-06,1 PL:DP:SP:GT:GQ 145,0,255:37:13:0/1:99 +chr10 121442611 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 121442698 . C A 4.8 . DP=7;AF1=0.5049;CI95=0.5,0.5;DP4=0,1,0,3;MQ=48;PV4=1,0.26,0.13,0.028 PL:DP:SP:GT:GQ 33,0,17:4:0:0/1:20 +chr10 121479874 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 121483052 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 121491168 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 121536025 . T TGTCGGCGTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 121565015 . C G 85 . DP=13;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=47 PL:DP:SP:GT:GQ 118,24,0:8:0:1/1:96 +chr10 121591175 . T G 13.5 . DP=11;AF1=0.5336;CI95=0.5,1;DP4=0,1,0,4;MQ=48;PV4=1,0.41,0.27,1 PL:DP:SP:GT:GQ 43,0,9:5:0:0/1:12 +chr10 121595221 . A G 17.1 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=2,5,0,5;MQ=49;PV4=0.47,0.19,0.032,1 PL:DP:SP:GT:GQ 47,0,108:12:3:0/1:50 +chr10 121596391 . A G 3.01 . DP=18;AF1=0.4997;CI95=0.5,0.5;DP4=6,0,1,3;MQ=49;PV4=0.033,0.042,0.024,0.26 PL:DP:SP:GT:GQ 30,0,86:10:15:0/1:33 +chr10 121604911 . aa aACGCCCTAGGa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 121612471 . A G 16.5 . DP=11;AF1=0.5554;CI95=0.5,1;DP4=1,0,3,0;MQ=49;PV4=1,1,0.33,1 PL:DP:SP:GT:GQ 46,0,7:4:0:0/1:10 +chr10 121632453 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 121653536 . ct cTAt 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 121655952 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 121662341 . CAG CAGAG 4.42 . INDEL;DP=17;AF1=0.5;CI95=0.5,0.5;DP4=6,3,2,0;MQ=50;PV4=1,1,1,0.46 PL:DP:SP:GT:GQ 40,0,209:11:0:0/1:43 +chr10 121662353 . G C 6.2 . DP=25;AF1=0.4999;CI95=0.5,0.5;DP4=8,1,0,4;MQ=49;PV4=0.007,0.007,5.8e-05,1 PL:DP:SP:GT:GQ 35,0,204:13:22:0/1:38 +chr10 121671747 . T G 24 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,4;MQ=48;PV4=1,0.21,0.15,1 PL:DP:SP:GT:GQ 54,0,81:8:0:0/1:57 +chr10 121675459 . A T 20.1 . DP=15;AF1=0.5001;CI95=0.5,0.5;DP4=0,3,0,5;MQ=49;PV4=1,1,0.11,0.11 PL:DP:SP:GT:GQ 50,0,34:8:0:0/1:37 +chr10 121679013 . A G 44.1 . DP=52;AF1=0.5102;CI95=0.5,0.5;DP4=1,1,6,1;MQ=48;PV4=0.42,0.39,1,1 PL:DP:SP:GT:GQ 74,0,14:9:4:0/1:17 +chr10 121685387 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 121689335 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 121693353 . T TAG 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 121713232 . G A 11.3 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 121723839 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 121734850 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 121756821 . GCAGCTGC G 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,1,0,1;MQ=50;PV4=1,0.12,1,1 PL:DP:SP:GT:GQ 38,0,129:4:0:0/1:41 +chr10 121773793 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 121775820 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 121808003 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 121836648 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 121860079 . A AAAGTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 121863786 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 121866396 . g gTGTCTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 121905242 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 121936767 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 121972204 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 121980043 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 122045546 . G A 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 122082325 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 122102226 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 122148462 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 122148700 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 122153744 . GAACT G 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr10 122159704 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 122182281 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 122201620 . A G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 122216590 . AGT AGTTGCGT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 122242990 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 122278402 . T A 37 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=2,1,1,6;MQ=47;PV4=0.18,0.031,0.066,1 PL:DP:SP:GT:GQ 67,0,78:10:7:0/1:70 +chr10 122286653 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 122303988 . A ATTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 122315156 . c cTTCTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 122341919 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 122358116 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 122362513 . c cTGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 122371124 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 122373653 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 122405818 . TGAGGG TG 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 122407323 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 122446736 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 122474098 . C G 6.98 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=42;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,36:2:0:0/1:36 +chr10 122491566 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 122552689 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 122583349 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 122597708 . T TGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 122624026 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 122625232 . T G 9.52 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=1,3,0,3;MQ=45;PV4=1,0.17,0.25,0.42 PL:DP:SP:GT:GQ 39,0,92:7:0:0/1:42 +chr10 122625233 . T G 20 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=1,4,0,4;MQ=46;PV4=1,0.34,0.47,1 PL:DP:SP:GT:GQ 50,0,85:9:0:0/1:53 +chr10 122626615 . T G 45 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=2,10,9,0;MQ=49;PV4=0.00022,0.0014,0.043,0.067 PL:DP:SP:GT:GQ 75,0,237:21:37:0/1:78 +chr10 122630825 . A C 12.3 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=10,3,1,4;MQ=49;PV4=0.047,0.012,0.05,1 PL:DP:SP:GT:GQ 42,0,240:18:13:0/1:45 +chr10 122646113 . C T 14.2 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=1,0,3,0;MQ=49;PV4=1,0.0066,0.22,1 PL:DP:SP:GT:GQ 44,0,38:4:0:0/1:40 +chr10 122648256 . C CGGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 122648671 . T A 21.1 . DP=20;AF1=0.5064;CI95=0.5,0.5;DP4=0,1,0,3;MQ=45;PV4=1,0.15,0.29,1 PL:DP:SP:GT:GQ 51,0,16:4:0:0/1:19 +chr10 122648776 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 122650531 . TAT TATGTTTGCAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 122660995 . GTTC GTTCCTTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 122663585 . G A 67 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=11,7,8,2;MQ=49;PV4=0.42,7.7e-08,5.1e-21,0.48 PL:DP:SP:GT:GQ 97,0,255:28:4:0/1:99 +chr10 122665310 . T A 7.8 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=9,0,5,0;MQ=50;PV4=1,0.00027,0.04,1 PL:DP:SP:GT:GQ 37,0,191:14:0:0/1:40 +chr10 122665509 . T G 6.98 . DP=43;AF1=0.4999;CI95=0.5,0.5;DP4=17,2,0,6;MQ=49;PV4=0.00016,0.00053,0.036,1 PL:DP:SP:GT:GQ 36,0,255:25:38:0/1:39 +chr10 122668296 . G A 79 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=0,12,0,8;MQ=48;PV4=1,0.048,7.1e-06,0.13 PL:DP:SP:GT:GQ 109,0,190:20:0:0/1:99 +chr10 122696673 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 122698556 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 122705265 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 122727754 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 122757867 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 122791956 . TGA TGAGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 122814197 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 122834639 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 122852544 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 122893055 . A G 4.61 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr10 122898276 . C CATGTATGTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 122919289 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 122945547 . T A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 122961166 . cac cACCAac 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 122965656 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 122969444 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 122969805 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 122971222 . TA TACCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 122993278 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 122993954 . c cGAAAAAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 123006168 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 123043329 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 123044671 . C CGT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 123050883 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 123054148 . T A 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 123068679 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 123082598 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 123085955 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 123089193 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 123094167 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 123119635 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 123134876 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 123199017 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 123212298 . T A 3.01 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,0,1;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,44:2:0:0/1:33 +chr10 123243138 . AGTGTGTGTGT AGTGTGTGT 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 123258028 . A C 21 . DP=21;AF1=0.5004;CI95=0.5,0.5;DP4=0,1,7,0;MQ=50;PV4=0.12,7.6e-05,0.31,1 PL:DP:SP:GT:GQ 51,0,28:8:0:0/1:31 +chr10 123271139 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 123279745 . C T 3.55 . DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 123324129 . T G 7 . DP=5;AF1=0.5031;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.077,0.11,0.46 PL:DP:SP:GT:GQ 36,0,19:3:0:0/1:22 +chr10 123333499 . GCA GCACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 123354633 . CAG CAGACAAGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 123370223 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 123371035 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 123371184 . TGTGAGG TG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 123374097 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 123424163 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 123428264 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 123436383 . AT ATTTT 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 123448080 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 123462483 . A ATTTCC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 123470920 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 123581407 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 123596254 . T C 99 . DP=21;AF1=1;CI95=1,1;DP4=0,0,15,2;MQ=45 PL:DP:SP:GT:GQ 236,51,0:17:0:1/1:99 +chr10 123597896 . t tCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 123604058 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 123629566 . T G 3.54 . DP=31;AF1=0.4998;CI95=0.5,0.5;DP4=1,3,0,5;MQ=49;PV4=0.44,0.052,0.31,1 PL:DP:SP:GT:GQ 31,0,86:9:0:0/1:34 +chr10 123660289 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 123725940 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 123733614 . AAC AACAC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 123766190 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 123773040 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 123783901 . ga gATTTTGTCa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 123810060 . G A 79 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=4,14,1,14;MQ=49;PV4=0.35,1.9e-13,0.0006,1 PL:DP:SP:GT:GQ 109,0,255:33:5:0/1:99 +chr10 123818953 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 123822974 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 123842726 . AG AGG 3.25 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 123845322 . T C,G 16.6 . DP=28;AF1=1;CI95=0.5,1;DP4=0,0,2,3;MQ=50 PL:DP:SP:GT:GQ 49,12,45,0,2,45:5:0:1/1:72 +chr10 123850473 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 123855221 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 123873872 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 123880037 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 123900808 . C CAAGGGAACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 123903165 . T A 6.2 . DP=15;AF1=0.4999;CI95=0.5,0.5;DP4=3,3,0,3;MQ=49;PV4=0.46,0.057,0.024,0.45 PL:DP:SP:GT:GQ 35,0,166:9:3:0/1:38 +chr10 123923560 . CCC CCCCTACC 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 123927025 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 123976391 . C A 42.3 . DP=20;AF1=1;CI95=0.5,1;DP4=0,0,1,4;MQ=47 PL:DP:SP:GT:GQ 75,15,0:5:0:1/1:75 +chr10 123990956 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 123995695 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 123996976 . G A 99 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=11,7,5,8;MQ=49;PV4=0.29,5e-19,0.00049,0.11 PL:DP:SP:GT:GQ 143,0,255:31:5:0/1:99 +chr10 124001539 . G C 25.3 . DP=33;AF1=0.5336;CI95=0.5,1;DP4=1,0,0,5;MQ=48;PV4=0.17,0.17,0.26,1 PL:DP:SP:GT:GQ 55,0,9:6:0:0/1:12 +chr10 124013604 . C A 65 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=1,16,0,12;MQ=49;PV4=1,1.8e-10,0.00086,1 PL:DP:SP:GT:GQ 95,0,255:29:0:0/1:98 +chr10 124024825 . G GT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 124036226 . T C 9.58 . DP=16;AF1=0.508;CI95=0.5,0.5;DP4=1,0,3,0;MQ=49;PV4=1,0.17,1,1 PL:DP:SP:GT:GQ 39,0,15:4:0:0/1:18 +chr10 124036494 . T C 54.1 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=48 PL:DP:SP:GT:GQ 87,18,0:6:0:1/1:90 +chr10 124062470 . G GTGTATGGAT 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 124065984 . A C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 124066652 . G A 99 . DP=29;AF1=1;CI95=1,1;DP4=2,0,26,0;MQ=48;PV4=1,1,0.07,1 PL:DP:SP:GT:GQ 146,40,0:28:0:1/1:99 +chr10 124089036 . G A 97.3 . DP=35;AF1=0.543;CI95=0.5,1;DP4=1,0,3,10;MQ=48;PV4=0.29,2.8e-06,0.23,0.47 PL:DP:SP:GT:GQ 127,0,8:14:0:0/1:11 +chr10 124095982 . A G 46 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=16,0,9,0;MQ=49;PV4=1,6.2e-06,0.00014,0.41 PL:DP:SP:GT:GQ 76,0,232:25:0:0/1:79 +chr10 124096209 . C T 37 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=3,16,2,5;MQ=49;PV4=0.59,0.00032,2.7e-07,1 PL:DP:SP:GT:GQ 67,0,255:26:2:0/1:70 +chr10 124102675 . C T 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 124107499 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 124115652 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 124137643 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 124138286 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 124142250 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 124152936 . GA GAA 55 . INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=50 PL:DP:SP:GT:GQ 95,12,0:4:0:1/1:72 +chr10 124164313 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 124166103 . GGAATGA GGA 4.42 . INDEL;DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,0;MQ=48;PV4=1,1,1,1 PL:DP:SP:GT:GQ 40,0,41:3:0:0/1:40 +chr10 124166104 . GAA GACAA 5.8 . INDEL;DP=14;AF1=0.5003;CI95=0.5,0.5;DP4=1,0,2,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 42,0,29:3:0:0/1:32 +chr10 124183732 . T C 74 . DP=14;AF1=1;CI95=1,1;DP4=0,0,11,0;MQ=48 PL:DP:SP:GT:GQ 107,33,0:11:0:1/1:99 +chr10 124189197 . A G 57 . DP=48;AF1=0.5;CI95=0.5,0.5;DP4=18,17,2,8;MQ=49;PV4=0.15,3.3e-08,4.3e-09,1 PL:DP:SP:GT:GQ 87,0,255:45:8:0/1:90 +chr10 124203421 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 124246432 . A AACTATG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 124249235 . C T 3.54 . DP=8;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,0,2;MQ=49;PV4=1,0.059,0.33,1 PL:DP:SP:GT:GQ 31,0,41:3:0:0/1:34 +chr10 124253347 . ct cTTCCCGACCCGt 12.7 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 124270071 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 124270456 . TAAA TA 5.79 . INDEL;DP=3;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 42,0,33:2:0:0/1:35 +chr10 124271589 . G A 98 . DP=38;AF1=1;CI95=1,1;DP4=0,0,1,15;MQ=44 PL:DP:SP:GT:GQ 131,48,0:16:0:1/1:99 +chr10 124271595 . G A 99 . DP=33;AF1=1;CI95=1,1;DP4=0,0,1,24;MQ=43 PL:DP:SP:GT:GQ 255,75,0:25:0:1/1:99 +chr10 124288547 . TGAG TGAGAG 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 124316436 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 124321432 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 124321470 . Cctctctctctct CCTctctctctctct 11.8 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 124328354 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 124397379 . GAG GAGGGAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 124439786 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 124441112 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 124443232 . A AGAGGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 124448618 . t tCG 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 124455653 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 124457452 . C T 99 . DP=52;AF1=1;CI95=1,1;DP4=0,0,17,29;MQ=49 PL:DP:SP:GT:GQ 255,138,0:46:0:1/1:99 +chr10 124459139 . T C 61 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=14,5,6,3;MQ=49;PV4=1,3.9e-09,0.00024,1 PL:DP:SP:GT:GQ 91,0,255:28:0:0/1:94 +chr10 124466680 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 124489137 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 124524354 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 124531893 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 124534792 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 124594304 . T C 8.64 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=3,6,0,6;MQ=49;PV4=0.23,0.074,0.068,1 PL:DP:SP:GT:GQ 38,0,160:15:6:0/1:41 +chr10 124595870 . TCAG T 5.08 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,53:3:0:0/1:44 +chr10 124596984 . A G 4.77 . DP=16;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,0,3;MQ=50;PV4=0.029,2.5e-05,0.047,1 PL:DP:SP:GT:GQ 33,0,136:7:15:0/1:36 +chr10 124615937 . A AGACAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 124619542 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 124640434 . C T 24 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 56,9,0:3:0:1/1:63 +chr10 124648150 . A G 16.9 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 48,6,0:2:0:1/1:49 +chr10 124648294 . A AAC 7.49 . INDEL;DP=2;AF1=0.5207;CI95=0.5,1;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,11:2:0:0/1:14 +chr10 124649592 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 124692017 . G A 8.64 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=0,6,5,0;MQ=48;PV4=0.0022,0.00027,0.11,1 PL:DP:SP:GT:GQ 38,0,162:11:27:0/1:41 +chr10 124695865 . tc tCAGTCTAGc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 124697198 . G A 49 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=11,0,11,0;MQ=49;PV4=1,2.1e-12,0.16,0.32 PL:DP:SP:GT:GQ 79,0,214:22:0:0/1:82 +chr10 124698876 . t tAACAGCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 124711511 . TTTT TTTTATTT 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 124723841 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 124735117 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 124735127 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 124736337 . C T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 124741634 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 124742792 . G A 47 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=9,1,4,0;MQ=48;PV4=1,0.011,8.3e-08,0.43 PL:DP:SP:GT:GQ 77,0,245:14:0:0/1:80 +chr10 124747108 . T C 56 . DP=6;AF1=0.5008;CI95=0.5,0.5;DP4=0,1,0,4;MQ=46;PV4=1,0.2,0.14,1 PL:DP:SP:GT:GQ 86,0,25:5:0:0/1:28 +chr10 124763005 . cctctctc cctctc 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 124810578 . A C 15.1 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=1,2,4,0;MQ=48;PV4=0.14,0.097,1,1 PL:DP:SP:GT:GQ 45,0,72:7:8:0/1:48 +chr10 124843916 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 124853291 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 124877544 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 124880003 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 124892242 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 124904348 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 124904986 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 124906237 . TG TGTAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 124914413 . CTCTG CTCTGTCTG 5.08 . INDEL;DP=42;AF1=0.5;CI95=0.5,0.5;DP4=20,1,6,0;MQ=50;PV4=1,9.7e-07,1,1 PL:DP:SP:GT:GQ 41,0,255:27:0:0/1:44 +chr10 124914414 . TCTG TCTGACTG 99 . INDEL;DP=43;AF1=0.5;CI95=0.5,0.5;DP4=20,1,8,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 167,0,255:29:0:0/1:99 +chr10 124914417 . G GACTC 17.5 . INDEL;DP=44;AF1=0.5;CI95=0.5,0.5;DP4=24,1,7,0;MQ=50;PV4=1,0.00014,1,1 PL:DP:SP:GT:GQ 55,0,255:32:0:0/1:58 +chr10 124917327 . G T 49 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=1,14,10,0;MQ=47;PV4=3.4e-06,1.6e-06,0.00016,1 PL:DP:SP:GT:GQ 79,0,248:25:55:0/1:82 +chr10 124917333 . G C 4.77 . DP=32;AF1=0.4999;CI95=0.5,0.5;DP4=4,11,4,0;MQ=47;PV4=0.018,0.24,2.2e-07,0.48 PL:DP:SP:GT:GQ 33,0,224:19:17:0/1:36 +chr10 124917544 . TACA TA 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 124921899 . T G 5.46 . DP=17;AF1=0.4999;CI95=0.5,0.5;DP4=3,2,0,4;MQ=49;PV4=0.17,0.1,0.05,1 PL:DP:SP:GT:GQ 34,0,100:9:8:0/1:37 +chr10 124937240 . C CCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 124972218 . T TGTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 125003520 . CA CAATAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 125016911 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 125021236 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 125043906 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 125046715 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 125056944 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 125067463 . t tCAGCCTAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 125082577 . aa aAGATa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 125095848 . ggac g 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 125110006 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 125119386 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 125138926 . T A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 125149346 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 125155267 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 125244159 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 125284177 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 125296968 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 125305622 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 125333705 . C CCCCACGT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 125334592 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 125339853 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 125384188 . A AGT 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 125393481 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 125410998 . g gTCCACGAATT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 125426565 . G C 6.02 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=49 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr10 125441713 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 125457891 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 125478790 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 125482303 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 125486004 . T TCCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 125521533 . G A 12.3 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=1,6,0,2;MQ=49;PV4=1,0.093,4.2e-05,0.26 PL:DP:SP:GT:GQ 42,0,200:9:0:0/1:45 +chr10 125528007 . A G 36.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=49 PL:DP:SP:GT:GQ 69,12,0:4:0:1/1:72 +chr10 125528048 . G A 99 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,5,1;MQ=45 PL:DP:SP:GT:GQ 135,18,0:6:0:1/1:90 +chr10 125533451 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 125555486 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 125559280 . G C 4.8 . DP=2;AF1=0.5049;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,17:2:0:0/1:20 +chr10 125568627 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 125579873 . G C 3.55 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 125596749 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 125602486 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 125618505 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 125622250 . CAAA CAA 84.6 . INDEL;DP=19;AF1=0.5102;CI95=0.5,0.5;DP4=0,2,0,14;MQ=50;PV4=1,2.4e-07,1,1 PL:DP:SP:GT:GQ 122,0,14:16:0:0/1:17 +chr10 125689719 . C CAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 125758226 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 125780954 . T G 25.5 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=50 PL:DP:SP:GT:GQ 58,12,0:4:0:1/1:72 +chr10 125781349 . T TAAAGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 125798123 . C T 16.1 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=10,2,0,5;MQ=48;PV4=0.0034,0.017,0.0037,1 PL:DP:SP:GT:GQ 46,0,234:17:25:0/1:49 +chr10 125800429 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 125801761 . A T 81 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=19,0,8,0;MQ=48;PV4=1,0.0099,2.7e-11,1 PL:DP:SP:GT:GQ 111,0,232:27:0:0/1:99 +chr10 125803303 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 125825105 . T TTCACGCCTAGG 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 125834406 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 125843550 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 125862440 . GT GTAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 125921939 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 125925426 . tg tGTCCTCg 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 125950697 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 125951777 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 125980418 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 125986629 . c cGAA 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 125995169 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 126000044 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 126010828 . T TGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 126017297 . GCT GCTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 126026801 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 126045116 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 126058542 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 126073771 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 126086730 . G A 52 . DP=13;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=50 PL:DP:SP:GT:GQ 85,27,0:9:0:1/1:99 +chr10 126089434 . G A 99 . DP=7;AF1=1;CI95=1,1;DP4=0,0,5,2;MQ=45 PL:DP:SP:GT:GQ 172,21,0:7:0:1/1:84 +chr10 126093991 . T C 99 . DP=32;AF1=1;CI95=0.5,1;DP4=2,2,22,4;MQ=46;PV4=0.17,1,0.11,1 PL:DP:SP:GT:GQ 202,8,0:30:8:1/1:56 +chr10 126100472 . A C 11.1 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 +chr10 126134865 . C G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 126148218 . g gGAGAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 126150587 . G GTCTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 126171749 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 126171761 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 126172863 . A G 74 . DP=31;AF1=1;CI95=1,1;DP4=0,0,2,7;MQ=49 PL:DP:SP:GT:GQ 107,27,0:9:0:1/1:99 +chr10 126185451 . T C 11.3 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=7,0,4,0;MQ=50;PV4=1,9e-07,0.1,1 PL:DP:SP:GT:GQ 41,0,189:11:0:0/1:44 +chr10 126186541 . G A 23 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=2,0,4,0;MQ=49;PV4=1,0.0003,0.066,0.12 PL:DP:SP:GT:GQ 53,0,74:6:0:0/1:56 +chr10 126199840 . tct tCTAct 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 126219487 . CCTTCTT CCTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 126231587 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 126232973 . CC CCTTTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 126283868 . AGGAGG A 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 126313399 . A G 3.98 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=44 PL:DP:SP:GT:GQ 33,6,0:2:0:1/1:49 +chr10 126313410 . G A 38.5 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=45 PL:DP:SP:GT:GQ 71,12,0:4:0:1/1:72 +chr10 126313415 . T G 28.5 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=46 PL:DP:SP:GT:GQ 61,12,0:4:0:1/1:72 +chr10 126325281 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 126366013 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 126367165 . C T 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 126427588 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 126429512 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 126446262 . TA TACGA 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 126494374 . a aCGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 126514505 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 126537934 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 126539691 . A C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 126556782 . A G 6.95 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=21 PL:DP:SP:GT:GQ 38,9,0:3:0:1/1:63 +chr10 126580936 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 126592082 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 126631348 . T G 6.2 . DP=38;AF1=0.4999;CI95=0.5,0.5;DP4=14,2,0,5;MQ=49;PV4=0.001,0.0035,3e-10,0.36 PL:DP:SP:GT:GQ 35,0,255:21:30:0/1:38 +chr10 126631901 . T G 40.5 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=48 PL:DP:SP:GT:GQ 73,12,0:4:0:1/1:72 +chr10 126654176 . C CCTTCTCAG 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 126681215 . CGGGG CGGG 10.6 . INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=50 PL:DP:SP:GT:GQ 49,6,0:2:0:1/1:49 +chr10 126681410 . A G 9.52 . DP=6;AF1=0.5002;CI95=0.5,0.5;DP4=0,2,0,2;MQ=46;PV4=1,1,0.015,1 PL:DP:SP:GT:GQ 39,0,31:4:0:0/1:33 +chr10 126681415 . T G 26 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=43 PL:DP:SP:GT:GQ 58,9,0:3:0:1/1:63 +chr10 126681846 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 126687768 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 126692155 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 126697188 . TTCCA T 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 126714041 . ATG ATGGCGTCTG 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 126715629 . C T 57.1 . DP=11;AF1=0.508;CI95=0.5,0.5;DP4=1,0,4,3;MQ=50;PV4=1,0.0019,0.37,0.12 PL:DP:SP:GT:GQ 87,0,15:8:0:0/1:18 +chr10 126715744 . G A 76 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=2,1,2,3;MQ=48;PV4=1,0.1,0.059,0.13 PL:DP:SP:GT:GQ 106,0,86:8:0:0/1:89 +chr10 126716180 . C A 44 . DP=20;AF1=0.504;CI95=0.5,0.5;DP4=1,0,0,6;MQ=47;PV4=0.14,0.003,1,1 PL:DP:SP:GT:GQ 74,0,18:7:0:0/1:21 +chr10 126718995 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 126725288 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 126727493 . C G 65 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=5,0,5,0;MQ=48;PV4=1,0.088,0.00078,1 PL:DP:SP:GT:GQ 95,0,127:10:0:0/1:98 +chr10 126768986 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 126773005 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 126795969 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 126826475 . G GCTCTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 126859018 . C CTG 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 126889119 . G A 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 126891112 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 126904236 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 126976939 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 127041630 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 127115780 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 127128646 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 127145793 . AT ATGGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 127150655 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 127160282 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 127168637 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 127182204 . CA CAAAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 127211988 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 127233551 . TTCTGA TTCTGATAATCTGA 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 127256320 . g gCA 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 127256542 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 127263351 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 127278457 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 127314111 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 127324243 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 127324762 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 127355992 . G A 17.1 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=4,2,1,4;MQ=49;PV4=0.24,0.24,0.02,1 PL:DP:SP:GT:GQ 47,0,112:11:6:0/1:50 +chr10 127364515 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 127378220 . TTCTTTCTCT TT 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr10 127414478 . A ATCATCT 8.19 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 127423940 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 127426430 . A G 36.3 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=49 PL:DP:SP:GT:GQ 69,15,0:5:0:1/1:75 +chr10 127426588 . C A 99 . DP=22;AF1=1;CI95=1,1;DP4=0,0,0,20;MQ=44 PL:DP:SP:GT:GQ 215,60,0:20:0:1/1:99 +chr10 127426835 . G T 99 . DP=21;AF1=1;CI95=1,1;DP4=0,0,15,0;MQ=48 PL:DP:SP:GT:GQ 138,45,0:15:0:1/1:99 +chr10 127429218 . A G 4.8 . DP=16;AF1=0.5049;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0,0.2,1 PL:DP:SP:GT:GQ 33,0,17:3:0:0/1:20 +chr10 127436048 . C T 99 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=12,0,14,0;MQ=48;PV4=1,2.2e-09,4.7e-08,1 PL:DP:SP:GT:GQ 133,0,216:26:0:0/1:99 +chr10 127436411 . TCCCCC TCCCCCC 7.62 . INDEL;DP=18;AF1=0.543;CI95=0.5,1;DP4=1,0,2,1;MQ=50;PV4=1,1,1,0.0015 PL:DP:SP:GT:GQ 44,0,8:4:0:0/1:11 +chr10 127439495 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 127448752 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 127452001 . T G 22 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=2,9,0,5;MQ=49;PV4=1,0.011,7.2e-09,1 PL:DP:SP:GT:GQ 52,0,232:16:0:0/1:55 +chr10 127481978 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 127482935 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 127484617 . C G 34 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=6,0,5,0;MQ=49;PV4=1,1.3e-05,0.053,1 PL:DP:SP:GT:GQ 64,0,172:11:0:0/1:67 +chr10 127484653 . G A 9.52 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=10,0,3,0;MQ=49;PV4=1,0.00036,0.0052,1 PL:DP:SP:GT:GQ 39,0,214:13:0:0/1:42 +chr10 127500893 . C A 18.1 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,4;MQ=48;PV4=1,0.14,0.0074,1 PL:DP:SP:GT:GQ 48,0,105:10:0:0/1:51 +chr10 127501713 . C CGT 5.08 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 127512426 . TCAG T 5.08 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,0.041,1,1 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr10 127522572 . T G 10.4 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,5;MQ=49;PV4=1,0.003,1,1 PL:DP:SP:GT:GQ 40,0,162:13:0:0/1:43 +chr10 127523108 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 127529753 . CTTTT CTTTTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 127529756 . TTGTGTGTGTGTGT TTGTGTGTGTGTGTGT 40.2 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 79,6,0:2:0:1/1:49 +chr10 127541922 . T G 17.1 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 49,9,0:3:0:1/1:63 +chr10 127545533 . AA AAGTGGTCGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 127548587 . C G 99 . DP=11;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=46 PL:DP:SP:GT:GQ 141,24,0:8:0:1/1:96 +chr10 127585655 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 127662071 . G C 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 127670443 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 127684240 . A G 34.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=44 PL:DP:SP:GT:GQ 66,6,0:2:0:1/1:49 +chr10 127685091 . T C 9.6 . DP=41;AF1=0.5101;CI95=0.5,0.5;DP4=1,0,3,0;MQ=49;PV4=1,0.25,0.33,1 PL:DP:SP:GT:GQ 39,0,14:4:0:0/1:17 +chr10 127686517 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 127693432 . C T 19.2 . DP=42;AF1=0.5163;CI95=0.5,1;DP4=1,0,5,0;MQ=49;PV4=1,0.036,1,0.4 PL:DP:SP:GT:GQ 49,0,12:6:0:0/1:15 +chr10 127693552 . T A 15.1 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=1,12,0,5;MQ=49;PV4=1,0.072,0.00021,1 PL:DP:SP:GT:GQ 45,0,187:18:0:0/1:48 +chr10 127696257 . ca cAGAGGAGa 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 127716711 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 127729132 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 127729715 . C T 3.54 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,43:2:0:0/1:34 +chr10 127737958 . T C 6.98 . DP=12;AF1=0.4999;CI95=0.5,0.5;DP4=0,4,3,0;MQ=48;PV4=0.029,0.0026,0.042,1 PL:DP:SP:GT:GQ 36,0,130:7:15:0/1:39 +chr10 127737961 . GT GACCTCT 3.25 . INDEL;DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,3,1,0;MQ=50;PV4=0.25,1,1,1 PL:DP:SP:GT:GQ 38,0,51:4:0:0/1:41 +chr10 127778754 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 127794894 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 127806555 . G A 96 . DP=46;AF1=0.5;CI95=0.5,0.5;DP4=25,0,20,0;MQ=48;PV4=1,3.4e-12,6.1e-10,1 PL:DP:SP:GT:GQ 126,0,245:45:0:0/1:99 +chr10 127824212 . A G 49 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=3,13,6,1;MQ=49;PV4=0.0049,0.009,3.2e-06,1 PL:DP:SP:GT:GQ 79,0,255:23:23:0/1:82 +chr10 127839881 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 127843740 . G T 25 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=47 PL:DP:SP:GT:GQ 57,9,0:3:0:1/1:63 +chr10 127843756 . G A 14.1 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=47 PL:DP:SP:GT:GQ 46,9,0:3:0:1/1:63 +chr10 127843921 . T C 13 . DP=13;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr10 127892463 . T TGGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 127901372 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 127919575 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 127943027 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 128002551 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 128059135 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 128064285 . GA GACTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 128079725 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 128081765 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 128122811 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 128146266 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 128153623 . G A 76 . DP=15;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=47 PL:DP:SP:GT:GQ 109,24,0:8:0:1/1:96 +chr10 128154420 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 128161805 . T TCGAGAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 128180665 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 128202603 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 128209769 . T C 5.29 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr10 128209797 . C T 24.3 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=50 PL:DP:SP:GT:GQ 57,15,0:5:0:1/1:75 +chr10 128209959 . G T 94 . DP=17;AF1=1;CI95=1,1;DP4=0,0,0,14;MQ=47 PL:DP:SP:GT:GQ 127,42,0:14:0:1/1:99 +chr10 128214579 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 128222581 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 128250462 . G C 19.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=40 PL:DP:SP:GT:GQ 51,6,0:2:0:1/1:49 +chr10 128258041 . T TCAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 128267781 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 128284352 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 128318082 . G GAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 128322034 . C T 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 128328346 . G T 7.59 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 128348869 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 128359668 . G A 29.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=44 PL:DP:SP:GT:GQ 61,6,0:2:0:1/1:49 +chr10 128396951 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 128410589 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 128413266 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 128436956 . C T 4.77 . DP=2;AF1=0.5001;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,31:2:0:0/1:32 +chr10 128459111 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 128529827 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 128555732 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 128563598 . CC CCCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 128595788 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 128788228 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 128826235 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 128865758 . gt gTCTAGAAt 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 128886739 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 128896906 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 128897548 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 128907816 . G T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 128914068 . AC ACGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 128950927 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 128973671 . C G 46 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=4,4,0,10;MQ=48;PV4=0.023,0.012,0.00052,1 PL:DP:SP:GT:GQ 76,0,153:18:16:0/1:79 +chr10 128974621 . C T 35.5 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=48 PL:DP:SP:GT:GQ 68,12,0:4:0:1/1:72 +chr10 128985064 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 129000403 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 129014747 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 129020592 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 129075628 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 129093692 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 129100288 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 129136146 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 129149360 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 129151501 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 129154317 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 129158856 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 129158863 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 129171661 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 129190204 . T TACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 129205926 . T A 3.01 . DP=5;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,38:2:0:0/1:32 +chr10 129229210 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 129232630 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 129241696 . T G 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 129304843 . GGT GGTTTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 129326476 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 129328135 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 129338561 . tg tGGg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 129352721 . GC GCCCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 129352790 . T TCTCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 129363292 . C A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 129367757 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 129367872 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 129384925 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 129392333 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 129408615 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 129448729 . cc cCATc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 129488624 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 129517540 . gaaac g 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 129519549 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 129536022 . A C 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 129538446 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 129548624 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 129566381 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 129586261 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 129594653 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 129595007 . C CTCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 129606906 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 129618202 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 129621617 . g gTTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 129630442 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 129648499 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 129652142 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 129657145 . t tTGGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 129691793 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 129715574 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 129716450 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 129777289 . aa aAATACGACTa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 129795734 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 129811722 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 129813374 . tt tTCGCGAt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 129817406 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 129823812 . G GGAAGCA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 129846010 . G A 89 . DP=40;AF1=0.5;CI95=0.5,0.5;DP4=18,2,16,4;MQ=49;PV4=0.66,4.1e-22,0.026,1 PL:DP:SP:GT:GQ 119,0,255:40:2:0/1:99 +chr10 129847799 . CAAA CATGAGTAAA 3.25 . INDEL;DP=16;AF1=0.5;CI95=0.5,0.5;DP4=1,2,1,0;MQ=50;PV4=1,1,1,0.48 PL:DP:SP:GT:GQ 38,0,67:4:0:0/1:41 +chr10 129854369 . T C 99 . DP=21;AF1=1;CI95=1,1;DP4=1,0,17,0;MQ=47;PV4=1,1,0.033,1 PL:DP:SP:GT:GQ 136,28,0:18:0:1/1:99 +chr10 129854550 . G A 32 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,5;MQ=49;PV4=1,1.6e-07,9.4e-05,1 PL:DP:SP:GT:GQ 62,0,154:10:0:0/1:65 +chr10 129856564 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 129856569 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 129859904 . AA AAGCTA 5.08 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,53:3:0:0/1:44 +chr10 129859992 . T C 50.1 . DP=10;AF1=1;CI95=1,1;DP4=0,0,1,6;MQ=49 PL:DP:SP:GT:GQ 83,21,0:7:0:1/1:84 +chr10 129867815 . T C 8.44 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr10 129875998 . C A 19.1 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=1,2,1,2;MQ=48;PV4=1,0.1,1,1 PL:DP:SP:GT:GQ 49,0,86:6:0:0/1:52 +chr10 129898450 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 129899938 . T A 55 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=2,3,0,8;MQ=48;PV4=0.13,0.022,0.034,1 PL:DP:SP:GT:GQ 85,0,130:13:9:0/1:88 +chr10 129903522 . C G 56 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=3,2,0,9;MQ=48;PV4=0.027,0.075,0.051,1 PL:DP:SP:GT:GQ 86,0,85:14:16:0/1:85 +chr10 129903802 . A G 99 . DP=40;AF1=0.5;CI95=0.5,0.5;DP4=7,10,11,9;MQ=48;PV4=0.51,2.1e-08,0.011,1 PL:DP:SP:GT:GQ 192,0,255:37:3:0/1:99 +chr10 129904560 . C T 99 . DP=63;AF1=1;CI95=0.5,1;DP4=0,1,5,5;MQ=48;PV4=1,1,0.23,1 PL:DP:SP:GT:GQ 138,14,0:11:0:1/1:70 +chr10 129908727 . A T 34 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=14,3,0,11;MQ=49;PV4=3.4e-05,0.078,0.099,1 PL:DP:SP:GT:GQ 64,0,172:28:45:0/1:67 +chr10 129914606 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 129917560 . T C 4.15 . DP=14;AF1=0.503;CI95=0.5,0.5;DP4=0,1,1,1;MQ=48;PV4=1,0.037,0.27,1 PL:DP:SP:GT:GQ 32,0,19:3:0:0/1:22 +chr10 129921472 . C A 8.65 . DP=6;AF1=0.5012;CI95=0.5,0.5;DP4=0,1,0,4;MQ=48;PV4=1,0.0011,0.25,1 PL:DP:SP:GT:GQ 38,0,23:5:0:0/1:26 +chr10 129939924 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 129951464 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 129972383 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 129994214 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 130009530 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 130034334 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 130042898 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 130044798 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 130044806 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 130048032 . A G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 130055763 . G GTGACCCCACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 130058648 . T TATCTATGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 130067678 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 130091572 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 130110234 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 130120257 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 130136050 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 130190467 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 130322886 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 130336278 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 130347619 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 130359416 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 130374091 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 130376844 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 130382852 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 130399092 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 130402204 . gta gTAGCta 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 130425538 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 130438776 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 130438791 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 130446679 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 130453947 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 130488282 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 130489490 . C G 4.14 . DP=2;AF1=0.5024;CI95=0.5,0.5;DP4=0,1,0,1;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,20:2:0:0/1:23 +chr10 130489491 . A AAGC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 130490130 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 130496991 . a aGGTCGACCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 130535993 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 130539028 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 130545229 . A ATACCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 130550242 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 130555305 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 130573824 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 130585556 . A ACTGTTTAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 130634378 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 130634383 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 130670343 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 130683868 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 130685314 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 130691338 . T G 99 . DP=21;AF1=1;CI95=1,1;DP4=0,0,16,1;MQ=46 PL:DP:SP:GT:GQ 176,51,0:17:0:1/1:99 +chr10 130693413 . C G 4.77 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 130701070 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 130711340 . GT GTCCATCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 130723028 . T TAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 130734113 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 130736752 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 130747792 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 130759636 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 130769453 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 130782966 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 130792332 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 130814910 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 130896336 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 130902188 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 130907932 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 130908081 . G C 7.02 . DP=2;AF1=0.5063;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,16:2:0:0/1:19 +chr10 130935019 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 130979230 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 130980566 . A G 6.2 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 35,0,41:2:0:0/1:37 +chr10 131003551 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 131007632 . TC TCGAGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 131048041 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 131070083 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 131081591 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 131111679 . gt gTCt 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 131118410 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 131124463 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 131132286 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 131145496 . t tCGAGCAAGAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 131155177 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 131188179 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 131211594 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 131234490 . c cGGGTGA 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr10 131237500 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 131275342 . A T 4.17 . DP=2;AF1=0.5079;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,15:2:0:0/1:18 +chr10 131280209 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 131316575 . ATG ATGGCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 131318585 . G A 7.81 . DP=2;AF1=0.5019;CI95=0.5,0.5;DP4=0,1,1,0;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,21:2:0:0/1:24 +chr10 131332424 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 131334789 . T C 7.77 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 39,9,0:3:0:1/1:63 +chr10 131340268 . C CTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 131346509 . A ATATACGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 131362590 . T A 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 131369856 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 131379634 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 131380589 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 131381324 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 131389385 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 131401325 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 131447904 . T TGTTTGAGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 131450281 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 131461030 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 131476411 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 131506030 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 131518748 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 131547251 . a aACGGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 131554718 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 131561097 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 131584627 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 131610037 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 131610380 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 131627925 . CC CCGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 131629641 . CG CGG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 131629950 . C CTGCTAAA 11.8 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 131634471 . C T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 131645248 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 131649133 . G T 3.54 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,44:2:0:0/1:34 +chr10 131658303 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 131671773 . T A 4.13 . DP=14;AF1=0.4998;CI95=0.5,0.5;DP4=3,2,1,2;MQ=49;PV4=1,0.028,1,1 PL:DP:SP:GT:GQ 32,0,153:8:0:0/1:35 +chr10 131671776 . CGT CGTAGT 7.37 . INDEL;DP=16;AF1=0.5025;CI95=0.5,0.5;DP4=1,0,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,20:2:0:0/1:23 +chr10 131718634 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 131726202 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 131735713 . G GAACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 131744416 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 131757722 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 131758198 . C CTTTTCTTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 131760352 . A G 99 . DP=10;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=43 PL:DP:SP:GT:GQ 190,27,0:9:0:1/1:99 +chr10 131761693 . T G 62 . DP=39;AF1=0.5;CI95=0.5,0.5;DP4=2,23,1,11;MQ=49;PV4=1,4.1e-08,5.4e-06,0.49 PL:DP:SP:GT:GQ 92,0,255:37:0:0/1:95 +chr10 131792215 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 131806367 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 131839054 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 131861790 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 131861800 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 131862594 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 131882912 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 131884771 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 131901273 . ct cTGt 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 131909275 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 131930149 . C G 31 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=3,1,0,3;MQ=46;PV4=0.14,0.25,0.35,1 PL:DP:SP:GT:GQ 61,0,100:7:8:0/1:64 +chr10 131965290 . a aGGCAC 9.94 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 131971518 . TTT TTTGGACGTT 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 131988151 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 132008061 . A T 4.16 . DP=2;AF1=0.5062;CI95=0.5,0.5;DP4=0,1,1,0;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,16:2:0:0/1:19 +chr10 132017356 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 132019021 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 132025554 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 132031733 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 132039343 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 132061041 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 132061838 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 132063843 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 132102637 . CGGT C 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 132118708 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 132119284 . t tCTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 132140467 . A ACTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 132167592 . G A 7.8 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,44:2:0:0/1:39 +chr10 132179202 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 132181057 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 132196956 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 132208904 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 132219573 . T TCCCAATG 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr10 132222045 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 132225661 . G GGAAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 132237003 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 132252623 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 132257571 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 132270791 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 132271910 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 132275004 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 132282308 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 132294096 . A AGTCTCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 132301476 . gta g 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 132323265 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 132325802 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 132396468 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 132413876 . C CCAGGACAT 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 132413918 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 132414773 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 132420857 . cac cACGCGTac 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 132455507 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 132477231 . G GTC 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 132478381 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 132480953 . CA CAGGA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 132483056 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 132538870 . G GAT 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 132539335 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 132554718 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 132556182 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 132570517 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 132573453 . T TTTCCCCAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 132589933 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 132595119 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 132595826 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 132597154 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 132600840 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 132606923 . GC GCGCAGCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 132607851 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 132612571 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 132622223 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 132634509 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 132636202 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 132655559 . T C 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 132656404 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 132711677 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 132713622 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 132724017 . G C 3.02 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 132734908 . AC ACCAGTCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 132739296 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 132791173 . GA GAGCCCTAA 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr10 132796536 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 132817853 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 132823803 . C G 7.77 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 39,9,0:3:0:1/1:63 +chr10 132835756 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 132845887 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 132865047 . T TAAATATTTGCA 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=48 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr10 132921138 . c cCTTGAGTACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 132937032 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 132941514 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 132951315 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 132963624 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 132975269 . acat a 3.25 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 132980522 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 132985668 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 133008894 . G A 24.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=44 PL:DP:SP:GT:GQ 56,6,0:2:0:1/1:49 +chr10 133008955 . C A 6.02 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr10 133029596 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 133035582 . T C 53.2 . DP=6;AF1=0.7303;CI95=0.5,1;DP4=0,1,0,5;MQ=47;PV4=1,1,0.16,1 PL:DP:SP:GT:GQ 82,0,2:6:0:0/1:3 +chr10 133067776 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 133080736 . C CGTTACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 133083809 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 133086724 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 133093438 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 133093443 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 133094468 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 133114967 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 133122637 . GTGT G 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 133149428 . G T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 133166722 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 133185074 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 133188973 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 133207372 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 133207921 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 133211534 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 133220696 . T A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 133233101 . GG GGTAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 133236957 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 133242727 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 133248564 . C G 5.29 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr10 133248596 . C T 7.8 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 133256049 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 133260051 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 133260644 . T A 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 133266945 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 133302540 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 133315980 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 133335625 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 133352260 . C CACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 133358587 . A T 3.02 . DP=2;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,28:2:0:0/1:29 +chr10 133358917 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 133365379 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 133368433 . G GTGACCCGAGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 133369823 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 133438640 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 133456378 . aggtgg agg 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 133469858 . aa aAATGGa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 133480827 . g gGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 133480862 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 133495459 . AC ACTCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 133495717 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr10 133508296 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 133513711 . C A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 133541931 . c cGCATAAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 133558790 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 133603215 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 133603709 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 133605711 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 133614493 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 133614794 . G GCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 133733196 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 133757086 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 133765944 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 133769482 . G C 4.61 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr10 133792625 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 133797646 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 133821427 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 133829787 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 133829805 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 133837972 . T C 4.61 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr10 133871358 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 133881586 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 133882798 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 133884342 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 133884347 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 133916398 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 133922809 . a aCAAGGTTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 133938908 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 133957726 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 134008606 . C CGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 134013856 . G T 23 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=49 PL:DP:SP:GT:GQ 55,9,0:3:0:1/1:63 +chr10 134013990 . G A 21 . DP=22;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 53,9,0:3:0:1/1:63 +chr10 134016115 . G A 58.3 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=47 PL:DP:SP:GT:GQ 91,15,0:5:0:1/1:75 +chr10 134022030 . G GAC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 134036986 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 134058302 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 134061159 . T A 58 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=44 PL:DP:SP:GT:GQ 90,9,0:3:0:1/1:63 +chr10 134071848 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 134096357 . CT CTTGAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 134114840 . A T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 134117688 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 134133739 . T C 3.02 . DP=2;AF1=0.5023;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,20:2:0:0/1:23 +chr10 134161633 . A G 9.31 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr10 134165279 . GTCC GTCCTCC 3.25 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,69:4:0:0/1:41 +chr10 134181256 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 134204670 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 134217126 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 134223639 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 134225072 . CTG CTGTGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 134228695 . G T 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 134292145 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 134322033 . C CTCT 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr10 134328468 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 134330221 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 134336854 . A T 3.01 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,1,0;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,44:2:0:0/1:33 +chr10 134345646 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 134347703 . G GGAC 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr10 134349219 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 134357429 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 134359843 . GT GTCT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 134382888 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 134389504 . CCACA CCACACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 134393061 . G C 7.59 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr10 134438241 . C CTCCCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 134440086 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 134445684 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 134464070 . C T 20 . DP=9;AF1=0.6671;CI95=0.5,1;DP4=0,1,0,3;MQ=48;PV4=1,1,0.23,0.24 PL:DP:SP:GT:GQ 49,0,3:4:0:0/1:5 +chr10 134468042 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 134492981 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 134502044 . GAAC GAACACAAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 134503810 . A AGAAGAGTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 134526067 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 134529175 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 134536568 . TC TCGACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 134537893 . G C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 134538364 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr10 134561945 . CT CTAGCAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 134563122 . C T 35 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=1,13,0,9;MQ=49;PV4=1,3.2e-12,1.2e-05,1 PL:DP:SP:GT:GQ 65,0,255:23:0:0/1:68 +chr10 134579300 . G C 15.1 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=5,12,5,0;MQ=49;PV4=0.0096,0.033,3e-05,1 PL:DP:SP:GT:GQ 45,0,255:22:20:0/1:48 +chr10 134594316 . A G 79 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=9,0,9,0;MQ=48;PV4=1,6.1e-05,0.00043,1 PL:DP:SP:GT:GQ 109,0,194:18:0:0/1:99 +chr10 134621672 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 134622408 . T C 13.9 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr10 134624504 . C T 13.9 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr10 134626453 . C T 15.1 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 47,9,0:3:0:1/1:63 +chr10 134627632 . G T 8.64 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=4,0,3,0;MQ=49;PV4=1,0.24,0.0088,0.18 PL:DP:SP:GT:GQ 38,0,70:7:0:0/1:41 +chr10 134638331 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 134638339 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 134677531 . CTATTA CTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 134679101 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 134679118 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 134685090 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 134697836 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 134723452 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 134725876 . t tGAG 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 134729446 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 134736509 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 134739035 . C CGATCTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 134750604 . C A 7.8 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 134755298 . C G 13.2 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 45,9,0:3:0:1/1:63 +chr10 134758804 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 134771728 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 134805863 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 134813204 . TCG TCGGCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 134815089 . AA AATCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 134878265 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 134884910 . ct cTGCGt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 134910409 . CT CTTGTTAT 12.7 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 134935381 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 134935384 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 134942166 . A G 42 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=5,0,3,1;MQ=47;PV4=0.44,0.15,0.16,0.28 PL:DP:SP:GT:GQ 72,0,99:9:0:0/1:75 +chr10 134957105 . G C 22.1 . DP=8;AF1=0.504;CI95=0.5,0.5;DP4=1,0,3,0;MQ=48;PV4=1,0.14,0.13,1 PL:DP:SP:GT:GQ 52,0,18:4:0:0/1:21 +chr10 134958554 . A G 3.03 . DP=12;AF1=0.5037;CI95=0.5,0.5;DP4=1,0,2,0;MQ=49;PV4=1,0,0,1 PL:DP:SP:GT:GQ 30,0,18:3:0:0/1:21 +chr10 134997524 . TC TCTTGC 29.5 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=1,2,1,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 67,0,74:5:0:0/1:69 +chr10 134997580 . C A 13.4 . DP=4;AF1=0.5207;CI95=0.5,1;DP4=1,0,0,3;MQ=34;PV4=0.25,1,0.087,1 PL:DP:SP:GT:GQ 43,0,11:4:0:0/1:14 +chr10 135010093 . G A 3.64 . DP=2;AF1=0.5205;CI95=0.5,0.5;DP4=0,1,1,0;MQ=43;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,11:2:0:0/1:14 +chr10 135017181 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 135022773 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 135034875 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 135053123 . A G 54 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=8,0,7,0;MQ=49;PV4=1,3.8e-07,0.019,0.2 PL:DP:SP:GT:GQ 84,0,195:15:0:0/1:87 +chr10 135059173 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 135067474 . tc tCACCCTATAAc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 135069899 . G C 4.8 . DP=2;AF1=0.5049;CI95=0.5,0.5;DP4=1,0,0,1;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,17:2:0:0/1:20 +chr10 135076523 . C A 13 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr10 135076596 . T C 99 . DP=34;AF1=1;CI95=1,1;DP4=0,1,12,15;MQ=46;PV4=1,1,0.014,1 PL:DP:SP:GT:GQ 255,67,0:28:0:1/1:99 +chr10 135076758 . T C 47.3 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,1,4;MQ=48 PL:DP:SP:GT:GQ 80,15,0:5:0:1/1:75 +chr10 135077311 . C G 14.7 . DP=4;AF1=0.5718;CI95=0.5,1;DP4=0,1,0,2;MQ=47;PV4=1,1,0.29,0.11 PL:DP:SP:GT:GQ 44,0,6:3:0:0/1:8 +chr10 135082346 . A G 37.3 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=49 PL:DP:SP:GT:GQ 70,15,0:5:0:1/1:75 +chr10 135082462 . AGGCTG AG 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr10 135084232 . CAG CAGAAG 99 . INDEL;DP=5;AF1=0.5554;CI95=0.5,1;DP4=1,0,2,2;MQ=50;PV4=1,1,0.34,1 PL:DP:SP:GT:GQ 152,0,7:5:0:0/1:10 +chr10 135084601 . T C 90.8 . DP=21;AF1=0.95;CI95=0.5,1;DP4=1,0,0,13;MQ=45;PV4=0.071,0.022,0.27,1 PL:DP:SP:GT:GQ 119,0,0:14:0:1/1:10 +chr10 135084950 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 135086380 . C T 59.3 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=47 PL:DP:SP:GT:GQ 92,15,0:5:0:1/1:75 +chr10 135087521 . G A 25.2 . DP=11;AF1=0.5207;CI95=0.5,1;DP4=0,1,2,1;MQ=49;PV4=1,1,0.11,1 PL:DP:SP:GT:GQ 55,0,11:4:0:0/1:14 +chr10 135089997 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 135092590 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr10 135096784 . A G 99 . DP=23;AF1=1;CI95=1,1;DP4=0,1,0,18;MQ=45;PV4=1,1,0.006,1 PL:DP:SP:GT:GQ 182,37,0:19:0:1/1:99 +chr10 135098672 . G A 19 . DP=23;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=49 PL:DP:SP:GT:GQ 51,9,0:3:0:1/1:63 +chr10 135104725 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 135106681 . TGGCGGC TGC 7.35 . INDEL;DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,43:2:0:0/1:43 +chr10 135112932 . TG TGTGG 5.08 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,0;MQ=50;PV4=1,1,1,0.27 PL:DP:SP:GT:GQ 41,0,91:3:0:0/1:44 +chr10 135114998 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 135120467 . t tAGGGCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 135138853 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 135141572 . G T 65.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=45 PL:DP:SP:GT:GQ 98,12,0:4:0:1/1:72 +chr10 135145419 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 135150977 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 135153096 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 135158172 . G A 13.9 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=49 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr10 135160313 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 135162595 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 135165790 . A G 99 . DP=25;AF1=1;CI95=0.5,1;DP4=1,1,5,11;MQ=46;PV4=1,1,0.02,1 PL:DP:SP:GT:GQ 242,12,0:18:0:1/1:72 +chr10 135170230 . C T 8.23 . DP=7;AF1=0.5718;CI95=0.5,1;DP4=0,1,0,3;MQ=49;PV4=1,1,0.24,0.048 PL:DP:SP:GT:GQ 37,0,6:4:0:0/1:8 +chr10 135170232 . A T 27.5 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=49 PL:DP:SP:GT:GQ 60,12,0:4:0:1/1:72 +chr10 135179458 . G C 99 . DP=40;AF1=1;CI95=1,1;DP4=1,0,25,10;MQ=47;PV4=1,1,0.16,1 PL:DP:SP:GT:GQ 255,86,0:36:0:1/1:99 +chr10 135180430 . A G 79.1 . DP=14;AF1=1;CI95=1,1;DP4=0,0,2,5;MQ=48 PL:DP:SP:GT:GQ 112,21,0:7:0:1/1:84 +chr10 135184126 . G A 76.6 . DP=17;AF1=1;CI95=0.5,1;DP4=1,0,7,1;MQ=48;PV4=1,1,0.21,1 PL:DP:SP:GT:GQ 109,11,0:9:0:1/1:66 +chr10 135197680 . G A 52 . DP=48;AF1=0.5;CI95=0.5,0.5;DP4=11,13,8,4;MQ=50;PV4=0.3,0.00028,0.0024,1 PL:DP:SP:GT:GQ 82,0,255:36:5:0/1:85 +chr10 135209610 . AA AATTA 6.56 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr10 135211982 . T C 3.54 . DP=23;AF1=0.4998;CI95=0.5,0.5;DP4=1,5,1,2;MQ=48;PV4=1,0.15,0.076,0.48 PL:DP:SP:GT:GQ 31,0,86:9:0:0/1:34 +chr10 135211986 . T C 20 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=4,1,0,4;MQ=47;PV4=0.048,1,0.063,1 PL:DP:SP:GT:GQ 50,0,70:9:13:0/1:53 +chr10 135233541 . A G 99 . DP=37;AF1=1;CI95=0.5,1;DP4=1,2,4,15;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 202,7,0:22:0:1/1:57 +chr10 135233708 . C A 9.53 . DP=4;AF1=0.5008;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.068,0.077,1 PL:DP:SP:GT:GQ 39,0,25:3:0:0/1:28 +chr10 135241683 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr10 135266281 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 135273238 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr10 135283391 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr10 135285970 . A C 3.02 . DP=2;AF1=0.5023;CI95=0.5,0.5;DP4=0,1,1,0;MQ=39;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,20:2:0:0/1:23 +chr10 135315599 . C G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr10 135340866 . TC TCC 71.4 . INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=50 PL:DP:SP:GT:GQ 111,9,0:3:0:1/1:63 +chr10 135344874 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr10 135347397 . T C 23.3 . DP=33;AF1=0.5336;CI95=0.5,1;DP4=0,1,0,4;MQ=49;PV4=1,0.26,0.26,1 PL:DP:SP:GT:GQ 53,0,9:5:0:0/1:12 +chr10 135352219 . A T 25 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=3,0,4,0;MQ=47;PV4=1,0.27,1,1 PL:DP:SP:GT:GQ 55,0,46:7:0:0/1:48 +chr10 135362828 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr10 135373275 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 135412313 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr10 135414678 . c cTTAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr10 135471842 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr10 135476967 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 135499159 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr10 135499767 . a aTCCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 193194 . T C 68 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,11;MQ=48;PV4=1,8.7e-06,0.0043,1 PL:DP:SP:GT:GQ 98,0,131:16:0:0/1:99 +chr11 193863 . T C 99 . DP=51;AF1=0.5;CI95=0.5,0.5;DP4=3,8,8,9;MQ=48;PV4=0.43,4e-06,0.002,1 PL:DP:SP:GT:GQ 197,0,251:28:4:0/1:99 +chr11 197093 . C A 3.01 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,35:2:0:0/1:32 +chr11 205910 . C G 4.77 . DP=15;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,3,0;MQ=48;PV4=1,1,0.13,0.38 PL:DP:SP:GT:GQ 33,0,45:7:0:0/1:36 +chr11 206089 . G A 20 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,4;MQ=49;PV4=1,0.092,0.004,1 PL:DP:SP:GT:GQ 50,0,146:11:0:0/1:53 +chr11 209894 . ACCCCCC ACCC 99 . INDEL;DP=20;AF1=0.5;CI95=0.5,0.5;DP4=1,3,5,5;MQ=50;PV4=0.58,0.32,1,1 PL:DP:SP:GT:GQ 255,0,127:14:2:0/1:99 +chr11 216642 . A C 17.8 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 49,6,0:2:0:1/1:49 +chr11 219344 . G C 4.15 . DP=2;AF1=0.5049;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,17:2:0:0/1:20 +chr11 221117 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 227545 . a aGAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 231413 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 237087 . A G 17.1 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,4,1,2;MQ=49;PV4=0.43,0.05,0.034,1 PL:DP:SP:GT:GQ 47,0,101:7:0:0/1:50 +chr11 243987 . G A 75 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=7,0,5,0;MQ=48;PV4=1,0.0097,1.5e-06,1 PL:DP:SP:GT:GQ 105,0,183:12:0:0/1:99 +chr11 244129 . C T 17.1 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=9,5,3,2;MQ=49;PV4=1,0.00049,2.6e-07,1 PL:DP:SP:GT:GQ 47,0,255:19:0:0/1:50 +chr11 244197 . T C 95 . DP=38;AF1=0.5;CI95=0.5,0.5;DP4=7,19,6,4;MQ=49;PV4=0.12,9e-06,1.2e-09,1 PL:DP:SP:GT:GQ 125,0,255:36:9:0/1:99 +chr11 244490 . ATACCTTTTAGTACCTTTTAG ATACCTTTTAG 99 . INDEL;DP=37;AF1=0.5;CI95=0.5,0.5;DP4=2,11,0,7;MQ=50;PV4=0.52,0.078,1,1 PL:DP:SP:GT:GQ 164,0,255:20:3:0/1:99 +chr11 249131 . G A 86 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=0,9,0,10;MQ=48;PV4=1,8.3e-05,0.00051,0.21 PL:DP:SP:GT:GQ 116,0,191:19:0:0/1:99 +chr11 253072 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 272050 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 284538 . T C 9.49 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=50 PL:DP:SP:GT:GQ 41,9,0:3:0:1/1:63 +chr11 290816 . A G 15.1 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 47,9,0:3:0:1/1:63 +chr11 293001 . AGG AGGG 32.5 . INDEL;DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,3;MQ=50;PV4=1,1,1,0.17 PL:DP:SP:GT:GQ 70,0,104:9:0:0/1:73 +chr11 296777 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 304019 . C A 19.1 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,3;MQ=47;PV4=0.25,0.009,0,1 PL:DP:SP:GT:GQ 49,0,38:4:0:0/1:41 +chr11 308426 . G C 3.41 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=50 PL:DP:SP:GT:GQ 32,6,0:2:0:1/1:49 +chr11 314497 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 320875 . TT TTGGT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 349959 . a aGAGAT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 356609 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 356927 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 396701 . C T 57.1 . DP=16;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=48 PL:DP:SP:GT:GQ 90,18,0:6:0:1/1:90 +chr11 397390 . GT GTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 399757 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 400109 . A G 23 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 55,9,0:3:0:1/1:63 +chr11 403980 . G A 25 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=47 PL:DP:SP:GT:GQ 57,9,0:3:0:1/1:63 +chr11 404317 . C T 26.5 . DP=36;AF1=0.8277;CI95=0.5,1;DP4=1,0,0,5;MQ=49;PV4=0.17,1,0.27,1 PL:DP:SP:GT:GQ 55,0,1:6:0:1/1:5 +chr11 406043 . G A 14.4 . DP=6;AF1=0.7303;CI95=0.5,1;DP4=0,1,0,3;MQ=49;PV4=1,1,0.21,0.037 PL:DP:SP:GT:GQ 43,0,2:4:0:0/1:3 +chr11 406473 . A C 8.44 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr11 416483 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 417245 . C A 6.79 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr11 417688 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 425696 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 428385 . A G 67.1 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=47 PL:DP:SP:GT:GQ 100,18,0:6:0:1/1:90 +chr11 428489 . T C 47.8 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=41 PL:DP:SP:GT:GQ 79,6,0:2:0:1/1:49 +chr11 430127 . T A 6.3 . DP=4;AF1=0.5162;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,1,0,1 PL:DP:SP:GT:GQ 35,0,12:3:0:0/1:15 +chr11 433387 . A G 8.44 . DP=17;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr11 435340 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 444685 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 485345 . T G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 488406 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 490036 . G A 99 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=10,2,6,10;MQ=49;PV4=0.023,9.8e-10,0.012,1 PL:DP:SP:GT:GQ 177,0,255:28:16:0/1:99 +chr11 506849 . A T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 523059 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 525526 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 532078 . A T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 549959 . C T 8.44 . DP=13;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr11 551674 . CGGAG CGGAGGAG 3.25 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.14 PL:DP:SP:GT:GQ 38,0,67:4:0:0/1:41 +chr11 551980 . G T 5.46 . DP=5;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,0,2;MQ=49;PV4=0.33,0.057,0.33,0.077 PL:DP:SP:GT:GQ 34,0,41:3:0:0/1:36 +chr11 552321 . C CGA 7.49 . INDEL;DP=4;AF1=0.5207;CI95=0.5,1;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,11:2:0:0/1:14 +chr11 552322 . C A 6.04 . DP=4;AF1=0.6242;CI95=0.5,1;DP4=0,1,0,2;MQ=47;PV4=1,1,0.33,0.47 PL:DP:SP:GT:GQ 34,0,4:3:0:0/1:6 +chr11 552520 . TC TCAAC 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 552756 . T C 27 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=47 PL:DP:SP:GT:GQ 59,9,0:3:0:1/1:63 +chr11 554214 . G C 42.1 . DP=8;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=50 PL:DP:SP:GT:GQ 75,21,0:7:0:1/1:84 +chr11 612894 . CCC CCCTCC 3.25 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,0.27 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr11 613797 . T A 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 617537 . C T 17.1 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=1,5,0,4;MQ=49;PV4=1,0.026,0.18,0.32 PL:DP:SP:GT:GQ 47,0,161:10:0:0/1:50 +chr11 617967 . C G 41 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=47 PL:DP:SP:GT:GQ 73,9,0:3:0:1/1:63 +chr11 618172 . A G 69 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=0,12,0,7;MQ=48;PV4=1,8.5e-06,6.3e-06,1 PL:DP:SP:GT:GQ 99,0,225:19:0:0/1:99 +chr11 618693 . G A 5.46 . DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=1,1,1,1;MQ=47;PV4=1,0.15,1,1 PL:DP:SP:GT:GQ 34,0,56:4:0:0/1:37 +chr11 665884 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 674458 . G A 44 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=13,0,8,0;MQ=49;PV4=1,5.6e-08,1.1e-05,1 PL:DP:SP:GT:GQ 74,0,227:21:0:0/1:77 +chr11 675941 . T TTGAAGCACTGG 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 686798 . G A 75 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=9,0,11,0;MQ=49;PV4=1,4.7e-06,0.0052,1 PL:DP:SP:GT:GQ 105,0,190:20:0:0/1:99 +chr11 691636 . G A 9.52 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,3;MQ=49;PV4=1,0.025,0.034,1 PL:DP:SP:GT:GQ 39,0,121:7:0:0/1:42 +chr11 698807 . C T 38 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=5,1,3,1;MQ=49;PV4=1,0.0036,0.034,0.0029 PL:DP:SP:GT:GQ 68,0,182:10:0:0/1:71 +chr11 700247 . A C 3.41 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 32,6,0:2:0:1/1:49 +chr11 718046 . A AGGGAAC 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 721719 . g gTC 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 747567 . GC GCCCC 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.26 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr11 772400 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 802982 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 811853 . C T 99 . DP=43;AF1=0.5;CI95=0.5,0.5;DP4=1,17,1,17;MQ=47;PV4=1,0.00087,1.4e-26,0.48 PL:DP:SP:GT:GQ 232,0,255:36:0:0/1:99 +chr11 828784 . A G 47.3 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=48 PL:DP:SP:GT:GQ 80,15,0:5:0:1/1:75 +chr11 838110 . C T 99 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=10,2,12,1;MQ=48;PV4=0.59,1.8e-05,0.00094,0.48 PL:DP:SP:GT:GQ 157,0,255:25:2:0/1:99 +chr11 839108 . CT CTAGACTT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 840319 . C T 99 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=3,0,5,0;MQ=46;PV4=1,1,0,1 PL:DP:SP:GT:GQ 133,0,72:8:0:0/1:75 +chr11 850314 . G T 3.69 . DP=3;AF1=0.5334;CI95=0.5,1;DP4=1,0,0,2;MQ=47;PV4=0.33,1,0.061,1 PL:DP:SP:GT:GQ 31,0,9:3:0:0/1:12 +chr11 856545 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 862652 . T C 19 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=50 PL:DP:SP:GT:GQ 51,9,0:3:0:1/1:63 +chr11 865503 . G A 22 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 54,9,0:3:0:1/1:63 +chr11 866498 . T C 25 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=47 PL:DP:SP:GT:GQ 57,9,0:3:0:1/1:63 +chr11 870446 . G A 51.3 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,3,2;MQ=49 PL:DP:SP:GT:GQ 84,15,0:5:0:1/1:75 +chr11 880241 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 902036 . TACACAC TAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 902381 . C G 57 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,7;MQ=46;PV4=1,1,1,0.0096 PL:DP:SP:GT:GQ 87,0,38:11:0:0/1:41 +chr11 907048 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 942619 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 944206 . GG GGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 970490 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 970510 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 990590 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 1012616 . C T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 1018821 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 1062862 . ca cAGCCCCAa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 1074153 . ACGGCC A 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 1103003 . G C 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 1107593 . C CTG 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 1112933 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 1112942 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 1116850 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 1120446 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 1128099 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 1130933 . gt gTTTt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 1160060 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 1243630 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 1291398 . G T 56 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=43 PL:DP:SP:GT:GQ 88,9,0:3:0:1/1:63 +chr11 1291407 . C G 4.61 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=41 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 1309956 . C T 43.8 . DP=29;AF1=0.6243;CI95=0.5,1;DP4=1,0,1,4;MQ=47;PV4=0.33,1,0.23,1 PL:DP:SP:GT:GQ 73,0,4:6:0:0/1:6 +chr11 1317611 . A T 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 1330302 . GG GGTG 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 1333890 . a aCCCTCAC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 1359335 . T A 4.13 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 1378034 . T G 3.07 . DP=2;AF1=0.5126;CI95=0.5,0.5;DP4=0,1,1,0;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,13:2:0:0/1:16 +chr11 1383906 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 1393026 . AGTG AG 4.42 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 1393032 . TGG TGGATGGG 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 1464977 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 1473176 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 1489216 . A AGAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 1490494 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 1500146 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 1508619 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 1508889 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 1518123 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 1521181 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 1538715 . CCTGT CCTGTGCTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 1547797 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 1548070 . AT ATGTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 1550250 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 1557414 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 1581617 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 1618930 . G T 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 1651550 . C T 22 . DP=45;AF1=0.5;CI95=0.5,0.5;DP4=13,8,2,13;MQ=32;PV4=0.0057,0.0027,0.0066,1 PL:DP:SP:GT:GQ 52,0,255:36:22:0/1:55 +chr11 1651830 . G T 16.1 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=0,13,0,7;MQ=49;PV4=1,2.3e-09,0.23,1 PL:DP:SP:GT:GQ 46,0,229:20:0:0/1:49 +chr11 1653347 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 1675398 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 1681900 . T C 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 1687642 . CCA CCAGACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 1690911 . A C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 1714061 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 1717303 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 1717309 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 1731377 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 1855854 . G C 31 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=48 PL:DP:SP:GT:GQ 63,9,0:3:0:1/1:63 +chr11 1857173 . T C 99 . DP=35;AF1=1;CI95=1,1;DP4=0,0,9,21;MQ=48 PL:DP:SP:GT:GQ 255,90,0:30:0:1/1:99 +chr11 1857762 . C T 27 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=1,8,4,0;MQ=48;PV4=0.007,0.026,1.2e-06,1 PL:DP:SP:GT:GQ 57,0,209:13:22:0/1:60 +chr11 1858262 . C T 20 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,3;MQ=48;PV4=1,0.0022,0.0025,0.43 PL:DP:SP:GT:GQ 50,0,131:7:0:0/1:53 +chr11 1861912 . G A 3.57 . DP=3;AF1=0.5062;CI95=0.5,0.5;DP4=1,0,0,2;MQ=49;PV4=0.33,0,0,1 PL:DP:SP:GT:GQ 31,0,16:3:0:0/1:19 +chr11 1866207 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 1869572 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 1873546 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 1888502 . G GCCAGGTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 1901467 . A C 3.41 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 32,6,0:2:0:1/1:49 +chr11 1907852 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 1944202 . A G 99 . DP=36;AF1=1;CI95=1,1;DP4=0,0,10,21;MQ=48 PL:DP:SP:GT:GQ 250,93,0:31:0:1/1:99 +chr11 1947789 . G A 14.2 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=0,11,0,5;MQ=50;PV4=1,9.9e-05,0.012,1 PL:DP:SP:GT:GQ 44,0,214:16:0:0/1:47 +chr11 1947793 . C T 9.52 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=0,9,0,7;MQ=49;PV4=1,3.9e-10,1,1 PL:DP:SP:GT:GQ 39,0,202:16:0:0/1:42 +chr11 1950302 . A G 80 . DP=21;AF1=1;CI95=1,1;DP4=0,0,20,0;MQ=49 PL:DP:SP:GT:GQ 113,60,0:20:0:1/1:99 +chr11 1955914 . C T 4.61 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 1956212 . T C 11.1 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 +chr11 1961210 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 1970066 . CC CCAAAAAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 1975901 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 1977552 . G T 18.1 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,5;MQ=47;PV4=1,0.12,0.32,0.15 PL:DP:SP:GT:GQ 48,0,116:12:0:0/1:51 +chr11 1977557 . C T 33 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,6;MQ=48;PV4=1,1,0.08,1 PL:DP:SP:GT:GQ 63,0,37:10:0:0/1:40 +chr11 2022253 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 2023635 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 2040780 . C CGCACAGCA 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 2057873 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 2058760 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 2085602 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 2094843 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 2094853 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 2143362 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 2155368 . G GATATAGCGA 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 2174187 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 2181060 . T G 7.59 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=49 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr11 2182004 . A G 38.3 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=49 PL:DP:SP:GT:GQ 71,15,0:5:0:1/1:75 +chr11 2190951 . C T 58 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=0,14,0,6;MQ=48;PV4=1,0.00075,1.9e-07,1 PL:DP:SP:GT:GQ 88,0,228:20:0:0/1:91 +chr11 2196133 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 2203976 . C G 5.46 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,44:2:0:0/1:37 +chr11 2206790 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 2207255 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 2209086 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 2212517 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 2218005 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 2223069 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 2225466 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 2229818 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 2262325 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 2284524 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 2287729 . GCA GCAAGACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 2296268 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 2308973 . A T 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 2310635 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 2314153 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 2321050 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 2337345 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 2356475 . AG AGCG 7.69 . INDEL;DP=2;AF1=0.5554;CI95=0.5,1;DP4=1,0,1,0;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,7:2:0:0/1:10 +chr11 2356866 . C CTAG 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,1;MQ=50;PV4=1,1,1,0.28 PL:DP:SP:GT:GQ 41,0,91:3:0:0/1:44 +chr11 2358019 . t tACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 2359312 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 2389448 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 2424684 . A C 5.29 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr11 2427211 . G A 31 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=16,0,8,0;MQ=49;PV4=1,6.8e-13,0.066,1 PL:DP:SP:GT:GQ 61,0,238:24:0:0/1:64 +chr11 2427291 . A C 12.5 . DP=60;AF1=0.5263;CI95=0.5,1;DP4=1,0,5,1;MQ=49;PV4=1,0.054,0.29,1 PL:DP:SP:GT:GQ 42,0,10:7:0:0/1:13 +chr11 2433580 . CCATC CC 10.8 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,2;MQ=50;PV4=1,0.02,1,0.49 PL:DP:SP:GT:GQ 48,0,112:5:0:0/1:51 +chr11 2434840 . C T 8.64 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=49;PV4=1,0.0095,0.19,0.43 PL:DP:SP:GT:GQ 38,0,99:6:0:0/1:41 +chr11 2436400 . GC GCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 2439542 . A G 19.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 51,6,0:2:0:1/1:49 +chr11 2440450 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 2441439 . G T 10.4 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,2,0;MQ=44;PV4=0.33,0.04,0.21,1 PL:DP:SP:GT:GQ 40,0,38:3:0:0/1:39 +chr11 2441686 . TGG TGGG 29.2 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 68,6,0:2:0:1/1:49 +chr11 2466889 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 2473729 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 2484857 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 2492922 . g gATCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 2495298 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 2503601 . TCCCC TCC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 2511805 . T C 12 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=46 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr11 2528143 . gt gTATAt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 2538750 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 2545396 . ag aGCTg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 2551445 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 2553177 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 2558785 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 2560234 . C T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 2569892 . G GTGCTTTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 2572548 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 2606084 . GCT GCTCGGGCGCGCCT 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 2687798 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 2687940 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 2692973 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 2719151 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 2738673 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 2745916 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 2798413 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 2815654 . A G 6.79 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr11 2820876 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 2825954 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 2834859 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 2834867 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 2850869 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 2868878 . T C 33.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=49 PL:DP:SP:GT:GQ 66,12,0:4:0:1/1:72 +chr11 2875169 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 2875569 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 2891854 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 2912715 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 2925621 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 2929476 . A G 4.77 . DP=18;AF1=0.4999;CI95=0.5,0.5;DP4=7,1,5,0;MQ=49;PV4=1,0.00093,0.44,1 PL:DP:SP:GT:GQ 33,0,164:13:0:0/1:36 +chr11 2943814 . C T 10.4 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,3;MQ=49;PV4=1,0.12,1,1 PL:DP:SP:GT:GQ 40,0,69:6:0:0/1:43 +chr11 2950558 . A G 5.46 . DP=5;AF1=0.4999;CI95=0.5,0.5;DP4=1,2,0,2;MQ=48;PV4=1,0.26,0.037,1 PL:DP:SP:GT:GQ 34,0,92:5:0:0/1:37 +chr11 2970442 . G A 5.83 . DP=7;AF1=0.5718;CI95=0.5,1;DP4=1,0,3,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,6:4:0:0/1:8 +chr11 2972974 . G A 9.52 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=2,0,3,0;MQ=47;PV4=1,0.15,1,0.23 PL:DP:SP:GT:GQ 39,0,39:5:0:0/1:39 +chr11 2984461 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 2987167 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 3020624 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 3022358 . CAT C 26.5 . INDEL;DP=31;AF1=0.5;CI95=0.5,0.5;DP4=6,2,0,3;MQ=50;PV4=0.061,1,1,0.2 PL:DP:SP:GT:GQ 64,0,141:11:12:0/1:67 +chr11 3026692 . T G 44.1 . DP=19;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=49 PL:DP:SP:GT:GQ 77,21,0:7:0:1/1:84 +chr11 3031758 . T C 4.77 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,0,1;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,44:2:0:0/1:36 +chr11 3039921 . A G 5.46 . DP=24;AF1=0.4999;CI95=0.5,0.5;DP4=2,2,1,3;MQ=46;PV4=1,0.25,0.12,1 PL:DP:SP:GT:GQ 34,0,90:8:0:0/1:37 +chr11 3040087 . C T 23 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,4;MQ=49;PV4=1,0.0041,0.18,0.35 PL:DP:SP:GT:GQ 53,0,126:8:0:0/1:56 +chr11 3046109 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 3048140 . A G 22 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,3;MQ=49;PV4=1,0.00017,0.043,1 PL:DP:SP:GT:GQ 52,0,158:8:0:0/1:55 +chr11 3052284 . G T 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 3059441 . A G 23 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=8,4,0,6;MQ=48;PV4=0.013,0.003,0.00076,1 PL:DP:SP:GT:GQ 53,0,255:18:19:0/1:56 +chr11 3062113 . G C 6.2 . DP=35;AF1=0.4999;CI95=0.5,0.5;DP4=7,7,6,0;MQ=49;PV4=0.051,0.009,0.0015,1 PL:DP:SP:GT:GQ 35,0,255:20:13:0/1:38 +chr11 3063448 . C A 49 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=3,3,0,6;MQ=48;PV4=0.18,0.37,0.00011,1 PL:DP:SP:GT:GQ 79,0,110:12:7:0/1:82 +chr11 3069278 . C T 3.04 . DP=14;AF1=0.5061;CI95=0.5,0.5;DP4=0,1,0,2;MQ=47;PV4=1,0.29,0.33,1 PL:DP:SP:GT:GQ 30,0,16:3:0:0/1:19 +chr11 3072317 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 3075919 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 3109403 . A G 27 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=45 PL:DP:SP:GT:GQ 59,9,0:3:0:1/1:63 +chr11 3109408 . C T 35.5 . DP=13;AF1=0.8277;CI95=0.5,1;DP4=1,0,4,1;MQ=47;PV4=1,1,0.28,1 PL:DP:SP:GT:GQ 64,0,1:6:0:1/1:5 +chr11 3111866 . C T 3.01 . DP=13;AF1=0.4997;CI95=0.5,0.5;DP4=0,2,0,2;MQ=49;PV4=1,0.011,0.048,0.0026 PL:DP:SP:GT:GQ 30,0,80:4:0:0/1:33 +chr11 3116207 . AACCCA AA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 3140905 . GG GGAG 12.7 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 3140906 . G GACGGGTCT 12.7 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 3141756 . G A 3.54 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,44:2:0:0/1:34 +chr11 3145624 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 3150369 . C CTAGA 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.49 PL:DP:SP:GT:GQ 41,0,55:3:0:0/1:44 +chr11 3150806 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 3164090 . T A 3.02 . DP=2;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,28:2:0:0/1:29 +chr11 3214508 . CCAAGC CC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 3215992 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 3237393 . G A 3.54 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,44:2:0:0/1:34 +chr11 3249829 . G A 61 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=6,1,8,3;MQ=49;PV4=1,5.7e-06,0.09,1 PL:DP:SP:GT:GQ 91,0,179:18:0:0/1:94 +chr11 3257079 . C T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 3360015 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 3381843 . A G 60.1 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=48 PL:DP:SP:GT:GQ 93,18,0:6:0:1/1:90 +chr11 3392745 . G A 79 . DP=16;AF1=1;CI95=1,1;DP4=0,0,14,0;MQ=49 PL:DP:SP:GT:GQ 112,42,0:14:0:1/1:99 +chr11 3392972 . G A 10.4 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 42,9,0:3:0:1/1:63 +chr11 3400334 . A G 6.99 . DP=10;AF1=0.5015;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.19,0.26,1 PL:DP:SP:GT:GQ 36,0,22:3:0:0/1:25 +chr11 3436392 . G A 11.3 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=1,3,1,2;MQ=37;PV4=1,1.3e-05,0.08,1 PL:DP:SP:GT:GQ 41,0,128:7:0:0/1:44 +chr11 3441080 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 3447776 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 3459736 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 3468449 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 3566605 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 3578512 . CCC CCCACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 3584920 . g gTAATA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 3597701 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 3613274 . T A 4.61 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 3637480 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 3637818 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 3660058 . C T 5.46 . DP=19;AF1=0.4999;CI95=0.5,0.5;DP4=0,8,0,4;MQ=50;PV4=1,0.13,0.031,1 PL:DP:SP:GT:GQ 34,0,102:12:0:0/1:37 +chr11 3661585 . ATGG ATGGTGG 74.5 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,3;MQ=50;PV4=0.4,1,1,1 PL:DP:SP:GT:GQ 112,0,42:5:0:0/1:45 +chr11 3682106 . G T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 3704704 . T C 4.13 . DP=6;AF1=0.4998;CI95=0.5,0.5;DP4=0,2,0,2;MQ=48;PV4=1,0.0074,0.019,1 PL:DP:SP:GT:GQ 32,0,80:4:0:0/1:35 +chr11 3716740 . T A 10.4 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=7,4,0,4;MQ=48;PV4=0.077,0.013,0.053,1 PL:DP:SP:GT:GQ 40,0,255:15:11:0/1:43 +chr11 3724290 . T TTCACGCG 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 3729763 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 3740977 . TC TCAGAGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 3743406 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 3793213 . T C 6.79 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr11 3802573 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 3828529 . at aTGt 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 3831371 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 3833333 . C T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 3838910 . G C 12 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr11 3848945 . C A 34 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=1,3,0,6;MQ=49;PV4=0.4,0.07,0.053,1 PL:DP:SP:GT:GQ 64,0,85:10:0:0/1:67 +chr11 3865639 . t tCAGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 3890924 . T G 11.3 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 3916772 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 3941287 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 3974026 . AC ACCC 3.25 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 3974054 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 3993231 . A G 67 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=3,0,4,0;MQ=42;PV4=1,0.11,0.24,1 PL:DP:SP:GT:GQ 97,0,82:7:0:0/1:85 +chr11 3994172 . A G 99 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=7,2,0,10;MQ=47;PV4=0.00071,0.35,1.1e-05,1 PL:DP:SP:GT:GQ 131,0,168:19:31:0/1:99 +chr11 3994217 . T TCCA 36.5 . INDEL;DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,2;MQ=50;PV4=1,0.43,1,0.013 PL:DP:SP:GT:GQ 74,0,138:6:0:0/1:77 +chr11 3994378 . TTG TTGCTG 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 4002672 . A T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 4040842 . a aACTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 4045787 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 4047134 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 4047781 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 4071802 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 4080728 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 4085143 . T TCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 4085687 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 4104060 . A C 94 . DP=11;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=46 PL:DP:SP:GT:GQ 127,27,0:9:0:1/1:99 +chr11 4123345 . C G 74.5 . DP=12;AF1=0.8277;CI95=0.5,1;DP4=0,1,0,8;MQ=47;PV4=1,0.43,0.15,1 PL:DP:SP:GT:GQ 103,0,1:9:0:1/1:5 +chr11 4128751 . C G 21 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=3,9,0,4;MQ=48;PV4=0.53,0.11,0.0037,1 PL:DP:SP:GT:GQ 51,0,254:16:3:0/1:54 +chr11 4133317 . C A 10.2 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr11 4139776 . T C 21 . DP=10;AF1=0.5004;CI95=0.5,0.5;DP4=0,2,0,4;MQ=49;PV4=1,0.35,0.14,1 PL:DP:SP:GT:GQ 51,0,28:6:0:0/1:31 +chr11 4141132 . C A 99 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=6,15,4,9;MQ=49;PV4=1,7e-10,2.4e-05,1 PL:DP:SP:GT:GQ 134,0,255:34:0:0/1:99 +chr11 4147872 . A C 6.2 . DP=9;AF1=0.5003;CI95=0.5,0.5;DP4=2,0,2,0;MQ=48;PV4=1,1,0.11,0.12 PL:DP:SP:GT:GQ 35,0,28:4:0:0/1:30 +chr11 4148010 . G T 7.8 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,0,2;MQ=48;PV4=0.33,0.0018,0.0099,1 PL:DP:SP:GT:GQ 37,0,80:4:5:0/1:40 +chr11 4149455 . at aTTGt 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 4164849 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 4171635 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 4188937 . TG TGCTCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 4230039 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 4232386 . G C 3.54 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,1,0;MQ=48;PV4=1,0.44,0,1 PL:DP:SP:GT:GQ 31,0,65:3:0:0/1:34 +chr11 4232893 . T C 46 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=3,2,2,1;MQ=48;PV4=1,0.22,0.00057,0.27 PL:DP:SP:GT:GQ 76,0,155:8:0:0/1:79 +chr11 4233141 . TTG TTGTG 5.87 . INDEL;DP=3;AF1=0.5128;CI95=0.5,0.5;DP4=1,0,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 42,0,13:2:0:0/1:16 +chr11 4270408 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 4388963 . T G 3.54 . DP=31;AF1=0.4998;CI95=0.5,0.5;DP4=12,0,0,4;MQ=49;PV4=0.00055,0.00075,0.0016,1 PL:DP:SP:GT:GQ 31,0,211:16:33:0/1:34 +chr11 4389404 . AGGG AGG 99 . INDEL;DP=34;AF1=0.5;CI95=0.5,0.5;DP4=7,6,8,7;MQ=50;PV4=1,2.8e-07,1,0.012 PL:DP:SP:GT:GQ 196,0,213:28:0:0/1:99 +chr11 4391459 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 4470223 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 4470639 . CA CATA 3.25 . INDEL;DP=15;AF1=0.5;CI95=0.5,0.5;DP4=2,1,0,1;MQ=50;PV4=1,1,1,0.18 PL:DP:SP:GT:GQ 38,0,91:4:0:0/1:41 +chr11 4471503 . A T 17.1 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,4;MQ=49;PV4=1,1,0.034,0.4 PL:DP:SP:GT:GQ 47,0,53:9:0:0/1:49 +chr11 4483769 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 4496916 . C T 76 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,6;MQ=47;PV4=1,0.017,0.0011,0.22 PL:DP:SP:GT:GQ 106,0,113:10:0:0/1:99 +chr11 4514272 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 4525268 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 4526650 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 4556603 . T G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 4566518 . T C 16.1 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=6,1,0,4;MQ=49;PV4=0.015,0.02,0.00023,1 PL:DP:SP:GT:GQ 46,0,172:11:18:0/1:49 +chr11 4566711 . C T 65 . DP=62;AF1=0.5;CI95=0.5,0.5;DP4=24,19,3,14;MQ=49;PV4=0.0096,9.5e-18,8.3e-08,0.47 PL:DP:SP:GT:GQ 95,0,255:60:20:0/1:98 +chr11 4575991 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 4589449 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 4593374 . C G 22 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=15,1,0,5;MQ=49;PV4=0.00029,0.00039,0.0003,1 PL:DP:SP:GT:GQ 52,0,255:21:35:0/1:55 +chr11 4594739 . C T 27.8 . DP=12;AF1=0.6243;CI95=0.5,1;DP4=0,1,0,4;MQ=48;PV4=1,1,1,1 PL:DP:SP:GT:GQ 57,0,4:5:0:0/1:6 +chr11 4597454 . A AATT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 4608553 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 4608646 . A C 6.2 . DP=9;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,2,0;MQ=49;PV4=0.33,0.0018,0,1 PL:DP:SP:GT:GQ 35,0,80:4:5:0/1:38 +chr11 4608912 . T C 3.54 . DP=6;AF1=0.4998;CI95=0.5,0.5;DP4=2,2,0,2;MQ=49;PV4=0.47,0.23,0.042,1 PL:DP:SP:GT:GQ 31,0,117:6:3:0/1:34 +chr11 4615234 . A G 99 . DP=11;AF1=1;CI95=1,1;DP4=0,0,10,0;MQ=43 PL:DP:SP:GT:GQ 195,30,0:10:0:1/1:99 +chr11 4615794 . A T 5.46 . DP=10;AF1=0.4999;CI95=0.5,0.5;DP4=1,3,2,0;MQ=47;PV4=0.4,0.41,0.18,1 PL:DP:SP:GT:GQ 34,0,83:6:4:0/1:37 +chr11 4621485 . C G 72 . DP=8;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=48 PL:DP:SP:GT:GQ 105,24,0:8:0:1/1:96 +chr11 4622159 . T C 98.4 . DP=9;AF1=1;CI95=0.5,1;DP4=0,1,4,4;MQ=48;PV4=1,1,0.22,1 PL:DP:SP:GT:GQ 131,13,0:9:0:1/1:65 +chr11 4622207 . G A 5.46 . DP=13;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,3,0;MQ=48;PV4=1,0.11,1,1 PL:DP:SP:GT:GQ 34,0,56:7:0:0/1:37 +chr11 4622208 . G A 10.4 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=5,0,3,0;MQ=49;PV4=1,1,0.09,0.14 PL:DP:SP:GT:GQ 40,0,63:8:0:0/1:43 +chr11 4623279 . A G 57.3 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=47 PL:DP:SP:GT:GQ 90,15,0:5:0:1/1:75 +chr11 4624394 . T C 33.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=48 PL:DP:SP:GT:GQ 66,12,0:4:0:1/1:72 +chr11 4624432 . C A 21 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 53,9,0:3:0:1/1:63 +chr11 4642904 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 4662153 . G C 4.13 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,44:2:0:0/1:35 +chr11 4668048 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 4674575 . G A 10.4 . DP=50;AF1=0.5;CI95=0.5,0.5;DP4=8,24,12,0;MQ=49;PV4=6e-06,5.8e-11,0.00012,1 PL:DP:SP:GT:GQ 40,0,255:44:52:0/1:43 +chr11 4683526 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 4687630 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 4703165 . C A 3.54 . DP=50;AF1=0.4998;CI95=0.5,0.5;DP4=1,1,3,0;MQ=50;PV4=0.4,0.0013,1,1 PL:DP:SP:GT:GQ 31,0,38:5:0:0/1:33 +chr11 4744543 . A G 13.9 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=42 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr11 4803310 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 4852412 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 4924867 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 4928841 . T C 99 . DP=72;AF1=0.5;CI95=0.5,0.5;DP4=19,15,18,16;MQ=49;PV4=1,7.8e-29,2.1e-07,0.44 PL:DP:SP:GT:GQ 220,0,255:68:0:0/1:99 +chr11 4929061 . C G 99 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=9,10,7,4;MQ=49;PV4=0.47,1.3e-08,0.00054,1 PL:DP:SP:GT:GQ 136,0,255:30:3:0/1:99 +chr11 4936608 . C G 37 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=5,3,1,6;MQ=50;PV4=0.12,0.00059,0.11,0.1 PL:DP:SP:GT:GQ 67,0,227:15:9:0/1:70 +chr11 4939947 . CT CTTT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 4967406 . A G 3.01 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,44:2:0:0/1:33 +chr11 4967468 . G A 99 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,3;MQ=42 PL:DP:SP:GT:GQ 178,15,0:5:0:1/1:75 +chr11 4967960 . CT CTGTGAGT 3.25 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=1,2,1,0;MQ=50;PV4=1,1,1,0.46 PL:DP:SP:GT:GQ 38,0,116:4:0:0/1:41 +chr11 4976267 . A G 17.1 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,3,1,1;MQ=47;PV4=0.4,0.13,0.23,1 PL:DP:SP:GT:GQ 47,0,96:5:0:0/1:50 +chr11 4994974 . A T 5.29 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr11 5015589 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 5020416 . A G 27.2 . DP=70;AF1=0.5163;CI95=0.5,1;DP4=1,1,4,1;MQ=50;PV4=1,1,0.19,1 PL:DP:SP:GT:GQ 57,0,12:7:0:0/1:15 +chr11 5021055 . C G 96 . DP=46;AF1=0.5;CI95=0.5,0.5;DP4=14,10,15,6;MQ=49;PV4=0.53,1.7e-12,0.003,0.16 PL:DP:SP:GT:GQ 126,0,255:45:3:0/1:99 +chr11 5021546 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 5037069 . G T 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 5046515 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 5064518 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 5080359 . G A 16.1 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=2,5,0,6;MQ=49;PV4=0.46,0.00011,0.45,1 PL:DP:SP:GT:GQ 46,0,217:13:3:0/1:49 +chr11 5080811 . A T 3.01 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,0,2;MQ=47;PV4=0.33,0.055,0.24,0.12 PL:DP:SP:GT:GQ 30,0,41:3:0:0/1:33 +chr11 5099183 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 5122284 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 5141980 . A G 99 . DP=39;AF1=1;CI95=1,1;DP4=0,1,7,27;MQ=47;PV4=1,0.088,0.18,1 PL:DP:SP:GT:GQ 255,66,0:35:0:1/1:99 +chr11 5142490 . G A 65 . DP=45;AF1=0.5;CI95=0.5,0.5;DP4=8,14,4,5;MQ=49;PV4=0.7,2.8e-07,4.2e-05,1 PL:DP:SP:GT:GQ 95,0,255:31:2:0/1:98 +chr11 5150870 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 5170651 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 5175757 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 5212768 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 5224225 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 5228143 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 5229730 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 5236459 . A G 5.46 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,44:2:0:0/1:37 +chr11 5263669 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 5269584 . T A 29 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=48 PL:DP:SP:GT:GQ 61,9,0:3:0:1/1:63 +chr11 5297310 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 5322737 . A G 99 . DP=61;AF1=0.5;CI95=0.5,0.5;DP4=11,14,10,6;MQ=48;PV4=0.34,0.0086,5e-16,1 PL:DP:SP:GT:GQ 255,0,255:41:5:0/1:99 +chr11 5323071 . C T 99 . DP=45;AF1=1;CI95=1,1;DP4=1,1,26,10;MQ=43;PV4=0.5,0.35,0.00034,1 PL:DP:SP:GT:GQ 255,36,0:38:3:1/1:99 +chr11 5323315 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 5336716 . T A 29 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=1,0,3,0;MQ=45;PV4=1,0.053,0.25,0.097 PL:DP:SP:GT:GQ 59,0,38:4:0:0/1:41 +chr11 5344561 . G A 52 . DP=11;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=49 PL:DP:SP:GT:GQ 85,24,0:8:0:1/1:96 +chr11 5344772 . T C 38.1 . DP=31;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=49 PL:DP:SP:GT:GQ 71,18,0:6:0:1/1:90 +chr11 5344847 . A G 18.2 . DP=19;AF1=0.5102;CI95=0.5,0.5;DP4=0,1,0,3;MQ=49;PV4=1,0.35,0.24,1 PL:DP:SP:GT:GQ 48,0,14:4:0:0/1:17 +chr11 5344902 . C G 99 . DP=25;AF1=1;CI95=1,1;DP4=0,0,6,13;MQ=48 PL:DP:SP:GT:GQ 211,57,0:19:0:1/1:99 +chr11 5345170 . A G 99 . DP=38;AF1=1;CI95=1,1;DP4=0,0,6,8;MQ=48 PL:DP:SP:GT:GQ 198,42,0:14:0:1/1:99 +chr11 5345486 . G A 8.44 . DP=23;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=49 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr11 5357206 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 5358619 . C T 4.75 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 35,9,0:3:0:1/1:63 +chr11 5364445 . AGTGT AGTGTGT 26.5 . INDEL;DP=22;AF1=0.5;CI95=0.5,0.5;DP4=0,4,1,1;MQ=50;PV4=0.33,0.38,1,0.17 PL:DP:SP:GT:GQ 64,0,126:6:0:0/1:67 +chr11 5364450 . A G 14.2 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=3,6,1,6;MQ=49;PV4=0.58,0.0031,0.14,1 PL:DP:SP:GT:GQ 44,0,204:16:2:0/1:47 +chr11 5373114 . G A 42 . DP=37;AF1=0.5003;CI95=0.5,0.5;DP4=1,0,1,5;MQ=49;PV4=0.29,0.0014,0.29,1 PL:DP:SP:GT:GQ 72,0,29:7:0:0/1:32 +chr11 5373242 . T G 99 . DP=52;AF1=0.5;CI95=0.5,0.5;DP4=14,19,11,5;MQ=49;PV4=0.13,1e-11,3.7e-10,1 PL:DP:SP:GT:GQ 139,0,255:49:9:0/1:99 +chr11 5373562 . C A 99 . DP=58;AF1=0.5;CI95=0.5,0.5;DP4=12,19,15,10;MQ=49;PV4=0.18,2.3e-15,0.00081,1 PL:DP:SP:GT:GQ 193,0,255:56:7:0/1:99 +chr11 5373646 . T C 99 . DP=30;AF1=1;CI95=1,1;DP4=0,0,5,5;MQ=49 PL:DP:SP:GT:GQ 149,30,0:10:0:1/1:99 +chr11 5383823 . T C 13.2 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=3,0,2,0;MQ=47;PV4=1,0.058,0.25,1 PL:DP:SP:GT:GQ 43,0,102:5:0:0/1:46 +chr11 5383991 . TATCTATAAA TA 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 5391183 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 5421084 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 5443442 . G C 43 . DP=50;AF1=0.5;CI95=0.5,0.5;DP4=24,3,18,0;MQ=49;PV4=0.26,4.2e-12,2.8e-09,1 PL:DP:SP:GT:GQ 73,0,255:45:6:0/1:76 +chr11 5443700 . C T 99 . DP=50;AF1=0.5;CI95=0.5,0.5;DP4=5,22,9,11;MQ=49;PV4=0.062,6.2e-21,6.4e-15,1 PL:DP:SP:GT:GQ 194,0,255:47:12:0/1:99 +chr11 5443893 . G A 99 . DP=87;AF1=0.5;CI95=0.5,0.5;DP4=17,30,15,15;MQ=49;PV4=0.25,1.2e-25,0.01,1 PL:DP:SP:GT:GQ 133,0,255:77:6:0/1:99 +chr11 5443963 . G A 79 . DP=45;AF1=0.5;CI95=0.5,0.5;DP4=9,19,3,12;MQ=49;PV4=0.49,2.8e-10,3.1e-06,1 PL:DP:SP:GT:GQ 109,0,255:43:3:0/1:99 +chr11 5444061 . G A 99 . DP=67;AF1=0.5;CI95=0.5,0.5;DP4=20,14,13,16;MQ=48;PV4=0.32,3.8e-23,7.1e-15,1 PL:DP:SP:GT:GQ 255,0,255:63:5:0/1:99 +chr11 5444136 . C T 99 . DP=70;AF1=0.5;CI95=0.5,0.5;DP4=13,28,14,7;MQ=49;PV4=0.014,8.2e-14,3e-09,0.38 PL:DP:SP:GT:GQ 176,0,255:62:18:0/1:99 +chr11 5448123 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 5462085 . G A 50 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=4,8,1,7;MQ=49;PV4=0.6,1.4e-07,0.00031,1 PL:DP:SP:GT:GQ 80,0,255:20:2:0/1:83 +chr11 5462255 . C G 40 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,2;MQ=48;PV4=0.47,0.26,0.16,1 PL:DP:SP:GT:GQ 70,0,39:6:3:0/1:42 +chr11 5462374 . C T 99 . DP=49;AF1=0.5;CI95=0.5,0.5;DP4=7,16,5,21;MQ=49;PV4=0.51,8.3e-16,1.2e-05,1 PL:DP:SP:GT:GQ 140,0,255:49:3:0/1:99 +chr11 5474885 . A G 6.98 . DP=31;AF1=0.4999;CI95=0.5,0.5;DP4=7,6,0,5;MQ=50;PV4=0.1,0.012,0.0089,1 PL:DP:SP:GT:GQ 36,0,255:18:10:0/1:39 +chr11 5475170 . G C 76 . DP=39;AF1=0.5;CI95=0.5,0.5;DP4=9,13,4,6;MQ=49;PV4=1,4.2e-07,1.8e-07,1 PL:DP:SP:GT:GQ 106,0,255:32:0:0/1:99 +chr11 5475506 . G A 99 . DP=50;AF1=0.5;CI95=0.5,0.5;DP4=16,12,13,8;MQ=48;PV4=0.78,2.8e-09,2.3e-07,1 PL:DP:SP:GT:GQ 219,0,255:49:1:0/1:99 +chr11 5490345 . G A 35.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=45 PL:DP:SP:GT:GQ 67,6,0:2:0:1/1:49 +chr11 5492037 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 5510284 . A G 70.8 . DP=55;AF1=1;CI95=0.5,1;DP4=1,0,4,5;MQ=49;PV4=1,0.32,0.3,1 PL:DP:SP:GT:GQ 103,10,0:10:0:1/1:60 +chr11 5510341 . C T 99 . DP=72;AF1=1;CI95=1,1;DP4=1,0,38,23;MQ=49;PV4=1,0.42,0.36,1 PL:DP:SP:GT:GQ 201,167,0:62:0:1/1:99 +chr11 5510423 . ATCTTCTT ATCTT 99 . INDEL;DP=82;AF1=0.5;CI95=0.5,0.5;DP4=12,19,20,15;MQ=50;PV4=0.15,3.3e-09,0.11,1 PL:DP:SP:GT:GQ 255,0,255:66:8:0/1:99 +chr11 5510497 . T C 99 . DP=55;AF1=1;CI95=1,1;DP4=1,0,8,4;MQ=49;PV4=1,1,0.21,1 PL:DP:SP:GT:GQ 153,23,0:13:0:1/1:92 +chr11 5510626 . T C 47.8 . DP=69;AF1=1;CI95=0.5,1;DP4=0,1,0,8;MQ=49;PV4=1,1,0.28,1 PL:DP:SP:GT:GQ 80,10,0:9:0:1/1:60 +chr11 5510928 . G A 61 . DP=16;AF1=1;CI95=1,1;DP4=0,0,0,11;MQ=49 PL:DP:SP:GT:GQ 94,33,0:11:0:1/1:99 +chr11 5518945 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 5536537 . A C 9.71 . DP=38;AF1=0.5263;CI95=0.5,1;DP4=0,1,4,0;MQ=49;PV4=0.2,0.079,1,0.31 PL:DP:SP:GT:GQ 39,0,10:5:0:0/1:13 +chr11 5546242 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 5565655 . T G 17.1 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,0,2,0;MQ=46;PV4=1,0.013,0.05,1 PL:DP:SP:GT:GQ 47,0,41:3:0:0/1:43 +chr11 5566112 . C T 12.3 . DP=49;AF1=0.5;CI95=0.5,0.5;DP4=14,7,3,3;MQ=49;PV4=0.64,0.0011,3.2e-05,1 PL:DP:SP:GT:GQ 42,0,255:27:2:0/1:45 +chr11 5566365 . T C 99 . DP=58;AF1=1;CI95=1,1;DP4=0,1,30,18;MQ=48;PV4=0.39,1,0.16,1 PL:DP:SP:GT:GQ 255,123,0:49:0:1/1:99 +chr11 5571567 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 5573193 . A T 56 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=7,2,4,1;MQ=48;PV4=1,0.022,0.0013,1 PL:DP:SP:GT:GQ 86,0,231:14:0:0/1:89 +chr11 5573701 . A C 5.46 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,2;MQ=49;PV4=1,0.089,0.33,1 PL:DP:SP:GT:GQ 34,0,38:3:0:0/1:36 +chr11 5587768 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 5590414 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 5593467 . A G 13.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr11 5602275 . A G 99 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=9,3,10,4;MQ=49;PV4=1,2.9e-15,0.0026,1 PL:DP:SP:GT:GQ 139,0,255:26:0:0/1:99 +chr11 5602605 . G A 99 . DP=84;AF1=0.5;CI95=0.5,0.5;DP4=23,18,17,19;MQ=48;PV4=0.5,1.2e-23,5.2e-08,1 PL:DP:SP:GT:GQ 226,0,255:77:3:0/1:99 +chr11 5602615 . A G 99 . DP=84;AF1=0.5;CI95=0.5,0.5;DP4=21,19,16,20;MQ=48;PV4=0.5,1.4e-32,3.7e-07,1 PL:DP:SP:GT:GQ 168,0,255:76:3:0/1:99 +chr11 5602679 . T C 99 . DP=77;AF1=0.5;CI95=0.5,0.5;DP4=10,12,24,23;MQ=49;PV4=0.8,2.8e-22,0.00039,1 PL:DP:SP:GT:GQ 236,0,255:69:1:0/1:99 +chr11 5602790 . A G 85 . DP=71;AF1=0.5;CI95=0.5,0.5;DP4=13,15,5,12;MQ=49;PV4=0.35,3.1e-14,0.00018,1 PL:DP:SP:GT:GQ 115,0,255:45:5:0/1:99 +chr11 5602968 . G A 99 . DP=73;AF1=1;CI95=1,1;DP4=2,1,26,37;MQ=46;PV4=0.57,1,0.00038,1 PL:DP:SP:GT:GQ 255,122,0:66:2:1/1:99 +chr11 5603163 . G A 4.13 . DP=8;AF1=0.4998;CI95=0.5,0.5;DP4=0,5,0,2;MQ=49;PV4=1,0.099,0.059,1 PL:DP:SP:GT:GQ 32,0,139:7:0:0/1:35 +chr11 5606302 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 5610043 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 5631814 . T C 28 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=7,1,0,6;MQ=49;PV4=0.0047,0.0022,0.00063,1 PL:DP:SP:GT:GQ 58,0,191:14:23:0/1:61 +chr11 5632212 . G A 48.3 . DP=61;AF1=0.543;CI95=0.5,1;DP4=1,0,1,4;MQ=48;PV4=0.33,0.21,0.15,1 PL:DP:SP:GT:GQ 78,0,8:6:0:0/1:11 +chr11 5652729 . AA AAAACACAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 5655073 . GA GATTA 5.08 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,2,1,0;MQ=50;PV4=0.33,1,1,0.11 PL:DP:SP:GT:GQ 41,0,59:3:0:0/1:44 +chr11 5664497 . A C 10.4 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=4,4,4,0;MQ=49;PV4=0.21,1,0.043,1 PL:DP:SP:GT:GQ 40,0,111:12:7:0/1:43 +chr11 5664831 . C A 81 . DP=44;AF1=0.5;CI95=0.5,0.5;DP4=11,9,12,2;MQ=48;PV4=0.076,3.4e-05,0.00021,1 PL:DP:SP:GT:GQ 111,0,255:34:11:0/1:99 +chr11 5664974 . T C 4.83 . DP=35;AF1=0.51;CI95=0.5,0.5;DP4=0,1,0,3;MQ=50;PV4=1,0.052,1,1 PL:DP:SP:GT:GQ 33,0,14:4:0:0/1:17 +chr11 5692804 . G C 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 5692817 . T G 15.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=42 PL:DP:SP:GT:GQ 47,6,0:2:0:1/1:49 +chr11 5700340 . T C 17.4 . DP=9;AF1=0.5336;CI95=0.5,1;DP4=0,1,1,1;MQ=45;PV4=1,1,0.26,0.33 PL:DP:SP:GT:GQ 47,0,9:3:0:0/1:12 +chr11 5701409 . G C 93 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=3,16,1,6;MQ=48;PV4=1,0.02,5.1e-18,1 PL:DP:SP:GT:GQ 123,0,255:26:0:0/1:99 +chr11 5717762 . T C 99 . DP=37;AF1=1;CI95=1,1;DP4=0,1,16,13;MQ=46;PV4=0.47,0.0026,0.031,1 PL:DP:SP:GT:GQ 255,40,0:30:0:1/1:99 +chr11 5718517 . G A 4.26 . DP=21;AF1=0.5262;CI95=0.5,1;DP4=1,0,2,0;MQ=49;PV4=1,1,0.17,1 PL:DP:SP:GT:GQ 32,0,10:3:0:0/1:13 +chr11 5730248 . A G 22 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=11,0,7,0;MQ=50;PV4=1,1.5e-06,4.9e-07,0.32 PL:DP:SP:GT:GQ 52,0,217:18:0:0/1:55 +chr11 5758062 . T C 99 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=4,2,6,5;MQ=48;PV4=1,1.8e-07,0.022,1 PL:DP:SP:GT:GQ 150,0,193:17:0:0/1:99 +chr11 5758118 . A C 16.1 . DP=33;AF1=0.5001;CI95=0.5,0.5;DP4=1,1,0,4;MQ=49;PV4=0.33,0.085,0.2,1 PL:DP:SP:GT:GQ 46,0,35:6:0:0/1:38 +chr11 5763936 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 5770234 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 5776470 . T G 17.1 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,1;MQ=48;PV4=1,0.13,0.33,1 PL:DP:SP:GT:GQ 47,0,41:3:0:0/1:43 +chr11 5786435 . T A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 5806123 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 5809548 . G A 99 . DP=51;AF1=0.5;CI95=0.5,0.5;DP4=8,19,11,11;MQ=49;PV4=0.24,1.7e-22,1.7e-05,1 PL:DP:SP:GT:GQ 205,0,255:49:6:0/1:99 +chr11 5809781 . A C 7.8 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=5,1,0,3;MQ=49;PV4=0.048,0.071,0.0025,0.19 PL:DP:SP:GT:GQ 37,0,160:9:13:0/1:40 +chr11 5841815 . C G 10.4 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=5,7,2,4;MQ=49;PV4=1,0.0059,0.031,1 PL:DP:SP:GT:GQ 40,0,255:18:0:0/1:43 +chr11 5841856 . C T 99 . DP=52;AF1=0.5;CI95=0.5,0.5;DP4=10,18,6,9;MQ=48;PV4=1,1.9e-17,1e-10,1 PL:DP:SP:GT:GQ 185,0,255:43:0:0/1:99 +chr11 5842356 . A G 99 . DP=39;AF1=0.5;CI95=0.5,0.5;DP4=14,6,13,3;MQ=47;PV4=0.7,0.00011,1.1e-12,1 PL:DP:SP:GT:GQ 245,0,255:36:2:0/1:99 +chr11 5842628 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 5856450 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 5906048 . G A 99 . DP=63;AF1=0.5;CI95=0.5,0.5;DP4=18,18,13,13;MQ=48;PV4=1,1.1e-18,3.2e-18,1 PL:DP:SP:GT:GQ 211,0,255:62:0:0/1:99 +chr11 5906143 . T C 99 . DP=56;AF1=0.5;CI95=0.5,0.5;DP4=17,10,17,10;MQ=49;PV4=1,1.4e-14,0.00013,1 PL:DP:SP:GT:GQ 203,0,255:54:0:0/1:99 +chr11 5906192 . A C 99 . DP=76;AF1=0.5;CI95=0.5,0.5;DP4=16,25,19,12;MQ=49;PV4=0.095,4.4e-20,1.3e-08,1 PL:DP:SP:GT:GQ 164,0,255:72:10:0/1:99 +chr11 5968728 . T C 99 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=8,8,12,4;MQ=46;PV4=0.27,0.0054,5.7e-13,1 PL:DP:SP:GT:GQ 255,0,255:32:6:0/1:99 +chr11 5974975 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 6004453 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 6048253 . T A 6.98 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=1,1,2,0;MQ=49;PV4=1,0.084,0.14,1 PL:DP:SP:GT:GQ 36,0,74:4:0:0/1:39 +chr11 6048547 . A G 11.3 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,3;MQ=47;PV4=1,0.18,0.17,1 PL:DP:SP:GT:GQ 41,0,39:5:0:0/1:40 +chr11 6050171 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 6066014 . TG TGCTCCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 6071141 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 6220376 . G C 43.2 . DP=17;AF1=1;CI95=0.5,1;DP4=1,0,15,0;MQ=49;PV4=1,0.0019,0.36,0.033 PL:DP:SP:GT:GQ 75,8,0:16:0:1/1:56 +chr11 6221169 . A G 99 . DP=40;AF1=1;CI95=1,1;DP4=1,1,10,25;MQ=46;PV4=0.51,1,0.0035,1 PL:DP:SP:GT:GQ 255,63,0:37:3:1/1:99 +chr11 6221214 . T A 99 . DP=41;AF1=0.5;CI95=0.5,0.5;DP4=6,18,3,12;MQ=49;PV4=1,5.8e-17,5.6e-14,1 PL:DP:SP:GT:GQ 157,0,255:39:0:0/1:99 +chr11 6231558 . TC TCGC 5.79 . INDEL;DP=31;AF1=0.5;CI95=0.5,0.5;DP4=8,7,0,2;MQ=50;PV4=0.47,1,1,0.12 PL:DP:SP:GT:GQ 42,0,255:17:3:0/1:45 +chr11 6234303 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 6239344 . G A 29 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=1,4,1,1;MQ=47;PV4=1,0.029,0.00074,1 PL:DP:SP:GT:GQ 59,0,182:7:0:0/1:62 +chr11 6239739 . CTT CT 63.5 . INDEL;DP=17;AF1=0.5;CI95=0.5,0.5;DP4=6,0,8,0;MQ=50;PV4=1,1.4e-11,1,1 PL:DP:SP:GT:GQ 101,0,123:14:0:0/1:99 +chr11 6240192 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 6240625 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 6243804 . A G 79 . DP=49;AF1=1;CI95=0.5,1;DP4=0,1,4,5;MQ=49;PV4=1,0.37,0.23,1 PL:DP:SP:GT:GQ 111,9,0:10:0:1/1:63 +chr11 6243963 . G A 24.8 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 56,6,0:2:0:1/1:49 +chr11 6256552 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 6259322 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 6280931 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 6281400 . T C 12 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr11 6291659 . G C 85 . DP=31;AF1=1;CI95=1,1;DP4=0,0,1,9;MQ=49 PL:DP:SP:GT:GQ 118,30,0:10:0:1/1:99 +chr11 6296227 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 6314607 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 6315965 . A T 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 6320946 . t tCGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 6325724 . GGAACATTC G 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 6326376 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 6327259 . T TCCCTGCGGAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 6343118 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 6362693 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 6417004 . CTAGTAG CTAG 99 . INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=5,1,5,1;MQ=50;PV4=1,0.17,1,0.46 PL:DP:SP:GT:GQ 197,0,169:12:0:0/1:99 +chr11 6424638 . G T 3.01 . DP=17;AF1=0.4997;CI95=0.5,0.5;DP4=1,2,2,0;MQ=48;PV4=0.4,0.03,0.0063,1 PL:DP:SP:GT:GQ 30,0,116:5:4:0/1:33 +chr11 6424639 . G A 4.13 . DP=16;AF1=0.4998;CI95=0.5,0.5;DP4=3,2,3,0;MQ=49;PV4=0.46,0.09,0.41,1 PL:DP:SP:GT:GQ 32,0,136:8:3:0/1:35 +chr11 6431861 . G C 14.2 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=14,4,0,4;MQ=49;PV4=0.0096,0.031,4.7e-09,0.12 PL:DP:SP:GT:GQ 44,0,255:22:20:0/1:47 +chr11 6433008 . C CTACAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 6435469 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 6467216 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 6471845 . T G 4.13 . DP=29;AF1=0.4998;CI95=0.5,0.5;DP4=3,5,0,4;MQ=49;PV4=0.49,0.01,0.19,1 PL:DP:SP:GT:GQ 32,0,203:12:3:0/1:35 +chr11 6474957 . CA CAAA 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 6478006 . G A 3.54 . DP=12;AF1=0.4998;CI95=0.5,0.5;DP4=3,2,3,0;MQ=48;PV4=0.46,0.028,0.042,1 PL:DP:SP:GT:GQ 31,0,142:8:3:0/1:34 +chr11 6481767 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 6486727 . AC ACTC 3.26 . INDEL;DP=11;AF1=0.5012;CI95=0.5,0.5;DP4=2,0,1,0;MQ=48;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,23:3:0:0/1:26 +chr11 6502649 . GA GAAA 7.36 . INDEL;DP=6;AF1=0.5016;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,22:2:0:0/1:25 +chr11 6502651 . T G 3.54 . DP=6;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,2,0;MQ=49;PV4=1,0.26,0.35,0.47 PL:DP:SP:GT:GQ 31,0,38:4:0:0/1:33 +chr11 6520015 . G T 29 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=4,2,5,0;MQ=49;PV4=0.45,0.023,0.054,0.3 PL:DP:SP:GT:GQ 59,0,164:11:3:0/1:62 +chr11 6520164 . T A 20 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=10,9,1,4;MQ=49;PV4=0.33,6e-06,3.2e-05,0.29 PL:DP:SP:GT:GQ 50,0,255:24:5:0/1:53 +chr11 6527670 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 6530475 . T C 7.8 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=1,3,0,4;MQ=49;PV4=1,0.097,0.12,1 PL:DP:SP:GT:GQ 37,0,92:8:0:0/1:40 +chr11 6532519 . C T 11.3 . DP=41;AF1=0.5;CI95=0.5,0.5;DP4=18,12,4,5;MQ=50;PV4=0.46,4.8e-11,0.00025,1 PL:DP:SP:GT:GQ 41,0,255:39:3:0/1:44 +chr11 6541371 . C T 3.03 . DP=10;AF1=0.5037;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.089,0.11,1 PL:DP:SP:GT:GQ 30,0,18:3:0:0/1:21 +chr11 6554755 . A AAAGCCT 6.56 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 6567254 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 6586882 . A C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 6592527 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 6622714 . G A 99 . DP=66;AF1=1;CI95=1,1;DP4=1,0,35,20;MQ=48;PV4=1,0.3,0.17,1 PL:DP:SP:GT:GQ 255,140,0:56:0:1/1:99 +chr11 6622857 . G A 30 . DP=43;AF1=0.5;CI95=0.5,0.5;DP4=1,22,0,18;MQ=50;PV4=1,1.6e-12,0.11,1 PL:DP:SP:GT:GQ 60,0,255:41:0:0/1:63 +chr11 6629530 . G A 83 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=5,10,4,7;MQ=49;PV4=1,2.3e-09,0.0074,0.32 PL:DP:SP:GT:GQ 113,0,255:26:0:0/1:99 +chr11 6629665 . C T 99 . DP=55;AF1=0.5;CI95=0.5,0.5;DP4=16,12,10,10;MQ=49;PV4=0.77,9.6e-16,6.5e-07,1 PL:DP:SP:GT:GQ 195,0,255:48:1:0/1:99 +chr11 6629729 . C G 6.98 . DP=30;AF1=0.4999;CI95=0.5,0.5;DP4=2,15,0,5;MQ=48;PV4=1,0.04,0.00033,1 PL:DP:SP:GT:GQ 36,0,255:22:0:0/1:39 +chr11 6629738 . A G 18.1 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=1,6,0,4;MQ=48;PV4=1,0.094,0.036,1 PL:DP:SP:GT:GQ 48,0,148:11:0:0/1:51 +chr11 6629739 . T C 27 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=1,4,0,4;MQ=47;PV4=1,0.16,0.027,0.45 PL:DP:SP:GT:GQ 57,0,111:9:0:0/1:60 +chr11 6630028 . TCCCCC TCCCC 14.7 . INDEL;DP=10;AF1=0.505;CI95=0.5,0.5;DP4=2,0,5,0;MQ=50;PV4=1,0.44,1,1 PL:DP:SP:GT:GQ 52,0,17:7:0:0/1:20 +chr11 6630833 . G A 17.1 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=3,19,3,2;MQ=49;PV4=0.056,0.022,0.00081,0.45 PL:DP:SP:GT:GQ 47,0,255:27:13:0/1:50 +chr11 6631711 . C G 4.13 . DP=16;AF1=0.4998;CI95=0.5,0.5;DP4=2,1,2,0;MQ=48;PV4=1,0.044,0.00021,1 PL:DP:SP:GT:GQ 32,0,113:5:0:0/1:35 +chr11 6632083 . A C 20 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=47 PL:DP:SP:GT:GQ 52,9,0:3:0:1/1:63 +chr11 6632348 . c cGA 26.5 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=2,0,0,2;MQ=50;PV4=0.33,1,1,0.18 PL:DP:SP:GT:GQ 64,0,71:4:5:0/1:66 +chr11 6632857 . A T 64 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=9,0,6,0;MQ=48;PV4=1,0.16,9.9e-05,1 PL:DP:SP:GT:GQ 94,0,162:15:0:0/1:97 +chr11 6636106 . T A 99 . DP=47;AF1=0.5;CI95=0.5,0.5;DP4=13,14,5,11;MQ=49;PV4=0.35,5.4e-08,1.3e-05,1 PL:DP:SP:GT:GQ 166,0,255:43:5:0/1:99 +chr11 6637504 . G A 85 . DP=38;AF1=0.5;CI95=0.5,0.5;DP4=13,1,22,0;MQ=45;PV4=0.39,8.6e-16,0.012,0.22 PL:DP:SP:GT:GQ 115,0,242:36:0:0/1:99 +chr11 6637518 . A G 99 . DP=43;AF1=1;CI95=1,1;DP4=1,1,31,4;MQ=45;PV4=0.26,1,0.4,1 PL:DP:SP:GT:GQ 238,76,0:37:6:1/1:99 +chr11 6638936 . T G 8.64 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=14,1,0,5;MQ=49;PV4=0.00039,2.2e-06,0.0021,0.36 PL:DP:SP:GT:GQ 38,0,254:20:34:0/1:41 +chr11 6638937 . T G 11.3 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=14,6,0,7;MQ=49;PV4=0.0019,0.0015,0.11,1 PL:DP:SP:GT:GQ 41,0,255:27:27:0/1:44 +chr11 6688033 . C A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 6694185 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 6706208 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 6730609 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 6749584 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 6789929 . C A 29 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=8,4,5,1;MQ=48;PV4=0.61,0.0011,0.048,1 PL:DP:SP:GT:GQ 59,0,255:18:2:0/1:62 +chr11 6790106 . T C 99 . DP=18;AF1=1;CI95=1,1;DP4=1,0,12,3;MQ=47;PV4=1,1,0.16,1 PL:DP:SP:GT:GQ 190,31,0:16:0:1/1:99 +chr11 6798053 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 6816778 . A G 80 . DP=47;AF1=0.5;CI95=0.5,0.5;DP4=1,1,4,5;MQ=49;PV4=1,0.00099,1,1 PL:DP:SP:GT:GQ 110,0,42:11:0:0/1:45 +chr11 6816875 . G A 99 . DP=63;AF1=0.5;CI95=0.5,0.5;DP4=9,24,15,11;MQ=49;PV4=0.032,2e-18,0.00067,0.18 PL:DP:SP:GT:GQ 176,0,255:59:15:0/1:99 +chr11 6844598 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 6858980 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 6864047 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 6865648 . A G 99 . DP=24;AF1=1;CI95=1,1;DP4=1,0,14,4;MQ=47;PV4=1,0.13,0.2,1 PL:DP:SP:GT:GQ 191,25,0:19:0:1/1:99 +chr11 6865675 . A ACG 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,39:2:0:0/1:41 +chr11 6865758 . T C 44 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,7;MQ=50;PV4=0.38,0.013,0.28,1 PL:DP:SP:GT:GQ 74,0,42:10:4:0/1:45 +chr11 6865831 . A G 99 . DP=14;AF1=1;CI95=1,1;DP4=0,0,4,5;MQ=44 PL:DP:SP:GT:GQ 255,27,0:9:0:1/1:99 +chr11 6867385 . A G 3.54 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=1,1,0,1;MQ=46;PV4=1,0.11,0.19,0.17 PL:DP:SP:GT:GQ 31,0,87:3:0:0/1:34 +chr11 6867950 . G A 43.3 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=49 PL:DP:SP:GT:GQ 76,15,0:5:0:1/1:75 +chr11 6891385 . G A 99 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=5,3,3,10;MQ=46;PV4=0.16,0.079,1.2e-05,1 PL:DP:SP:GT:GQ 234,0,209:21:8:0/1:99 +chr11 6891704 . T C 99 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=1,11,6,7;MQ=49;PV4=0.073,0.0019,0.0065,1 PL:DP:SP:GT:GQ 141,0,214:25:11:0/1:99 +chr11 6898196 . C T 6.2 . DP=18;AF1=0.4999;CI95=0.5,0.5;DP4=1,3,0,4;MQ=49;PV4=1,0.055,0.22,1 PL:DP:SP:GT:GQ 35,0,111:8:0:0/1:38 +chr11 6908515 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 6913127 . A G 99 . DP=38;AF1=0.5;CI95=0.5,0.5;DP4=4,15,2,16;MQ=48;PV4=0.66,6.9e-12,3e-13,1 PL:DP:SP:GT:GQ 180,0,255:37:2:0/1:99 +chr11 6913244 . A G 99 . DP=33;AF1=1;CI95=1,1;DP4=0,1,15,12;MQ=49;PV4=0.46,0.0014,1,1 PL:DP:SP:GT:GQ 170,48,0:28:0:1/1:99 +chr11 6933393 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 6942229 . A C 24 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=1,2,5,0;MQ=48;PV4=0.11,0.012,1,1 PL:DP:SP:GT:GQ 54,0,84:8:10:0/1:57 +chr11 6942245 . T G 18.1 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=2,1,1,2;MQ=47;PV4=1,0.017,0.025,1 PL:DP:SP:GT:GQ 48,0,106:6:0:0/1:51 +chr11 6942695 . C T 99 . DP=69;AF1=0.5;CI95=0.5,0.5;DP4=14,19,16,14;MQ=47;PV4=0.45,0.13,5.8e-58,1 PL:DP:SP:GT:GQ 255,0,255:63:3:0/1:99 +chr11 6943254 . C T 99 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=3,8,0,9;MQ=47;PV4=0.22,0.00012,1.4e-15,1 PL:DP:SP:GT:GQ 162,0,255:20:7:0/1:99 +chr11 6947761 . T A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 6962945 . C G 11.3 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=48;PV4=1,0.41,0.05,0.17 PL:DP:SP:GT:GQ 41,0,42:6:0:0/1:41 +chr11 6969478 . aga aGACTga 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 6976831 . GG GGGAG 27.6 . INDEL;DP=9;AF1=0.5129;CI95=0.5,0.5;DP4=1,0,2,0;MQ=50;PV4=1,1,1,0.17 PL:DP:SP:GT:GQ 65,0,13:3:0:0/1:16 +chr11 6976988 . A T 99 . DP=47;AF1=1;CI95=1,1;DP4=0,0,20,12;MQ=46 PL:DP:SP:GT:GQ 255,96,0:32:0:1/1:99 +chr11 6977241 . T A 7.8 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=3,0,0,3;MQ=49;PV4=0.1,8.2e-06,0.058,0.4 PL:DP:SP:GT:GQ 37,0,110:6:10:0/1:40 +chr11 7020522 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 7022160 . A G 51 . DP=51;AF1=0.5;CI95=0.5,0.5;DP4=0,5,3,3;MQ=47;PV4=0.18,0.12,1,0.11 PL:DP:SP:GT:GQ 81,0,94:11:7:0/1:84 +chr11 7022531 . A T 6.98 . DP=9;AF1=0.4999;CI95=0.5,0.5;DP4=2,1,1,1;MQ=47;PV4=1,0.47,0.055,1 PL:DP:SP:GT:GQ 36,0,60:5:0:0/1:39 +chr11 7022717 . T C 99 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=44 PL:DP:SP:GT:GQ 133,12,0:4:0:1/1:72 +chr11 7059960 . A C 28.3 . DP=22;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=50 PL:DP:SP:GT:GQ 61,15,0:5:0:1/1:75 +chr11 7061087 . CCG CCGCG 7.35 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,39:2:0:0/1:41 +chr11 7063755 . C T 99 . DP=55;AF1=1;CI95=1,1;DP4=0,1,16,7;MQ=48;PV4=0.33,0.19,0.3,1 PL:DP:SP:GT:GQ 189,47,0:24:0:1/1:99 +chr11 7065289 . C A 93 . DP=14;AF1=1;CI95=1,1;DP4=0,0,0,11;MQ=48 PL:DP:SP:GT:GQ 126,33,0:11:0:1/1:99 +chr11 7067854 . A T 18.2 . DP=26;AF1=0.5207;CI95=0.5,1;DP4=2,0,7,0;MQ=48;PV4=1,1,0.12,1 PL:DP:SP:GT:GQ 48,0,11:9:0:0/1:14 +chr11 7070866 . G A 56.1 . DP=20;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=48 PL:DP:SP:GT:GQ 89,18,0:6:0:1/1:90 +chr11 7073948 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 7079038 . G A 99 . DP=45;AF1=0.9998;CI95=0.5,1;DP4=2,1,9,4;MQ=49;PV4=1,1,0.076,1 PL:DP:SP:GT:GQ 129,2,0:16:0:1/1:37 +chr11 7081336 . C G 6.98 . DP=39;AF1=0.4999;CI95=0.5,0.5;DP4=0,20,0,6;MQ=49;PV4=1,0.48,4.8e-13,1 PL:DP:SP:GT:GQ 36,0,109:26:0:0/1:39 +chr11 7083830 . T A 18.1 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,3;MQ=49;PV4=1,0.36,0.00094,1 PL:DP:SP:GT:GQ 48,0,80:7:0:0/1:51 +chr11 7110363 . G A 23 . DP=17;AF1=0.5002;CI95=0.5,0.5;DP4=2,0,4,0;MQ=49;PV4=1,0.1,0.21,1 PL:DP:SP:GT:GQ 53,0,30:6:0:0/1:33 +chr11 7111153 . C A 30 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=2,11,0,7;MQ=49;PV4=0.52,0.011,0.014,1 PL:DP:SP:GT:GQ 60,0,238:20:3:0/1:63 +chr11 7136880 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 7174213 . GG GGGTTACGGATG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 7216819 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 7288017 . A G 4.8 . DP=2;AF1=0.5062;CI95=0.5,0.5;DP4=1,0,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,16:2:0:0/1:19 +chr11 7321052 . T A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 7324475 . T C 38.5 . DP=33;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=49 PL:DP:SP:GT:GQ 71,12,0:4:0:1/1:72 +chr11 7325007 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 7335198 . G A 99 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,13;MQ=46;PV4=1,0.012,3.7e-07,1 PL:DP:SP:GT:GQ 139,0,123:19:0:0/1:99 +chr11 7340287 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 7362244 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 7363114 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 7389137 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 7391525 . G GGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 7394962 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 7399435 . C CTGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 7439093 . G T 6.98 . DP=7;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,2,0;MQ=48;PV4=1,0.33,0.2,0.25 PL:DP:SP:GT:GQ 36,0,89:6:0:0/1:39 +chr11 7439095 . A G 15.1 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=2,0,3,0;MQ=48;PV4=1,0.03,1,1 PL:DP:SP:GT:GQ 45,0,53:5:0:0/1:47 +chr11 7441737 . T C 87 . DP=46;AF1=0.5;CI95=0.5,0.5;DP4=15,14,10,6;MQ=50;PV4=0.54,5.6e-10,0.0026,1 PL:DP:SP:GT:GQ 117,0,255:45:3:0/1:99 +chr11 7441952 . A G 61 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=0,11,0,11;MQ=49;PV4=1,1e-10,0.027,0.36 PL:DP:SP:GT:GQ 91,0,216:22:0:0/1:94 +chr11 7442808 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 7444012 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 7456084 . A C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 7476210 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 7512505 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 7532293 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 7533245 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 7586676 . CTTCTT C 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 7607256 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 7614492 . A G 99 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=0,10,0,10;MQ=46;PV4=1,0.084,1.8e-13,1 PL:DP:SP:GT:GQ 175,0,204:20:0:0/1:99 +chr11 7622240 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 7628899 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 7632854 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 7638465 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 7655822 . C G,T 4.13 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:DP:SP:GT:GQ 49,20,32,17,0,32:2:0:1/1:41 +chr11 7659613 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 7660921 . C T 30.3 . DP=7;AF1=0.543;CI95=0.5,1;DP4=1,0,5,0;MQ=49;PV4=1,0,0,1 PL:DP:SP:GT:GQ 60,0,8:6:0:0/1:11 +chr11 7662732 . C T 99 . DP=48;AF1=1;CI95=1,1;DP4=0,1,19,23;MQ=44;PV4=1,1,0.00047,1 PL:DP:SP:GT:GQ 255,110,0:43:0:1/1:99 +chr11 7663726 . T C 7.59 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr11 7670160 . T C 82 . DP=15;AF1=1;CI95=1,1;DP4=0,0,0,13;MQ=49 PL:DP:SP:GT:GQ 115,39,0:13:0:1/1:99 +chr11 7670305 . C A 61.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=45 PL:DP:SP:GT:GQ 94,12,0:4:0:1/1:72 +chr11 7670734 . G T 35.2 . DP=14;AF1=0.7303;CI95=0.5,1;DP4=1,0,7,0;MQ=45;PV4=1,0.21,1,0.18 PL:DP:SP:GT:GQ 64,0,2:8:0:0/1:3 +chr11 7670740 . T C 5.46 . DP=16;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,4,0;MQ=48;PV4=1,0.01,0.1,1 PL:DP:SP:GT:GQ 34,0,118:8:0:0/1:37 +chr11 7670758 . TTC TTCTCTACCTATCCTC 95.5 . INDEL;DP=17;AF1=1;CI95=1,1;DP4=0,0,7,2;MQ=50 PL:DP:SP:GT:GQ 136,27,0:9:0:1/1:99 +chr11 7671974 . C T 59.3 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=47 PL:DP:SP:GT:GQ 92,15,0:5:0:1/1:75 +chr11 7672068 . C G 23 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=12,6,6,0;MQ=49;PV4=0.28,0.066,0.00046,1 PL:DP:SP:GT:GQ 53,0,255:24:6:0/1:56 +chr11 7672738 . G GAGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 7673015 . G A 86.1 . DP=45;AF1=1;CI95=0.5,1;DP4=0,1,9,2;MQ=48;PV4=0.25,0.039,0.2,1 PL:DP:SP:GT:GQ 117,5,0:12:0:1/1:46 +chr11 7686596 . G A 15.1 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=48;PV4=1,0.14,0.21,0.16 PL:DP:SP:GT:GQ 45,0,72:4:0:0/1:48 +chr11 7686601 . GGTGT GGTGTGTGT 4.91 . INDEL;DP=7;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 +chr11 7686602 . GTGTT GTGTTTGTT 99 . INDEL;DP=7;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=49 PL:DP:SP:GT:GQ 142,15,0:5:0:1/1:75 +chr11 7686858 . C G 74.1 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=47 PL:DP:SP:GT:GQ 107,18,0:6:0:1/1:90 +chr11 7687669 . A C 19 . DP=23;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=50 PL:DP:SP:GT:GQ 51,9,0:3:0:1/1:63 +chr11 7687715 . T C 87.5 . DP=28;AF1=0.9998;CI95=0.5,1;DP4=0,1,6,3;MQ=48;PV4=0.4,0.19,0.24,1 PL:DP:SP:GT:GQ 117,2,0:10:0:1/1:37 +chr11 7689633 . A C 63 . DP=9;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=49 PL:DP:SP:GT:GQ 96,27,0:9:0:1/1:99 +chr11 7702302 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 7738420 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 7746198 . AAAC A 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 7752050 . t tGTCTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 7768437 . C T 7.8 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,44:2:0:0/1:39 +chr11 7846699 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 7856147 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 7906509 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 7925521 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 7954136 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 8009256 . C T 3.01 . DP=9;AF1=0.4997;CI95=0.5,0.5;DP4=0,4,0,3;MQ=49;PV4=1,0.18,0.031,0.2 PL:DP:SP:GT:GQ 30,0,66:7:0:0/1:33 +chr11 8013450 . C A 15.1 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,3;MQ=49;PV4=1,0.025,0.11,1 PL:DP:SP:GT:GQ 45,0,58:5:0:0/1:48 +chr11 8016730 . T C 55 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=1,19,0,8;MQ=49;PV4=1,4.2e-07,1.1e-05,0.42 PL:DP:SP:GT:GQ 85,0,255:28:0:0/1:88 +chr11 8026448 . t tCGTTGTG 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 8029110 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 8043246 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 8052996 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 8065357 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 8088973 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 8089357 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 8095414 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 8118185 . C G 7.59 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr11 8118200 . C A 3.41 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 32,6,0:2:0:1/1:49 +chr11 8118472 . T C 64.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=45 PL:DP:SP:GT:GQ 97,12,0:4:0:1/1:72 +chr11 8119063 . A G 19.1 . DP=5;AF1=0.5001;CI95=0.5,0.5;DP4=1,1,0,3;MQ=46;PV4=0.4,1,1,1 PL:DP:SP:GT:GQ 49,0,33:5:0:0/1:36 +chr11 8121302 . g gTCATCAACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 8122234 . G A 53.3 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=47 PL:DP:SP:GT:GQ 86,15,0:5:0:1/1:75 +chr11 8122414 . G A 9.52 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=9,0,4,0;MQ=49;PV4=1,0.0019,0.0093,1 PL:DP:SP:GT:GQ 39,0,195:13:0:0/1:42 +chr11 8123005 . CTCTGTCTGT CTCTGT 99 . INDEL;DP=46;AF1=0.5;CI95=0.5,0.5;DP4=21,5,10,5;MQ=50;PV4=0.45,0.11,1,1 PL:DP:SP:GT:GQ 255,0,255:41:3:0/1:99 +chr11 8133105 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 8137860 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 8146377 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 8148184 . A G 19.1 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=0,2,5,0;MQ=48;PV4=0.048,2.1e-06,0.13,1 PL:DP:SP:GT:GQ 49,0,73:7:13:0/1:52 +chr11 8152141 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 8159892 . G T 32 . DP=39;AF1=0.5;CI95=0.5,0.5;DP4=2,19,1,12;MQ=50;PV4=1,7e-10,0.042,1 PL:DP:SP:GT:GQ 62,0,255:34:0:0/1:65 +chr11 8174263 . aa aAAGTGGGa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 8183971 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 8229632 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 8232380 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 8232881 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 8241868 . c cAGT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 8251153 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 8270791 . G C 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 8318344 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 8331442 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 8340619 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 8343009 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 8354709 . AATCATA AA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 8372885 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 8378354 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 8379857 . T A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 8404115 . G GAACCATA 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 8406279 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 8439534 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 8528082 . g gTCTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 8539838 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 8608406 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 8615585 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 8615590 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 8623642 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 8663345 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 8665546 . GTT GTTATT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 8717942 . A G 5.46 . DP=28;AF1=0.4999;CI95=0.5,0.5;DP4=6,8,5,0;MQ=50;PV4=0.045,0.021,7.4e-05,0.26 PL:DP:SP:GT:GQ 34,0,255:19:14:0/1:37 +chr11 8720615 . C A 58 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=0,13,0,15;MQ=49;PV4=1,6.7e-16,0.00016,0.34 PL:DP:SP:GT:GQ 88,0,223:28:0:0/1:91 +chr11 8734530 . GGAG GGAGTTGAGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 8735662 . G A 40.5 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=47 PL:DP:SP:GT:GQ 73,12,0:4:0:1/1:72 +chr11 8741844 . CCC CCCACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 8753618 . C CAGCTGAGCA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 8780596 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 8792966 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 8801021 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 8818535 . AC ACGACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 8820992 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 8828414 . T C 4.61 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 8835963 . ttc tTCTGAACTGtc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 8843914 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 8847949 . C CCGGGAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 8850502 . ggtgtgtgtgtgggtgtgtgtgtg ggtgtgtgtgggtgtgtgtgtg 6.56 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 8852527 . A AGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 8857547 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 8895785 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 8918499 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 8924262 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 8934101 . A G 17.2 . DP=26;AF1=0.508;CI95=0.5,0.5;DP4=0,2,0,7;MQ=50;PV4=1,0.029,1,1 PL:DP:SP:GT:GQ 47,0,15:9:0:0/1:18 +chr11 8938934 . C T 80 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=1,15,1,14;MQ=49;PV4=1,1e-14,0.0047,1 PL:DP:SP:GT:GQ 110,0,255:31:0:0/1:99 +chr11 8942999 . G A 99 . DP=55;AF1=1;CI95=1,1;DP4=1,0,23,16;MQ=46;PV4=1,1,0.022,1 PL:DP:SP:GT:GQ 255,93,0:40:0:1/1:99 +chr11 8943107 . TGA TGAGGA 3.25 . INDEL;DP=13;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=49;PV4=1,1,1,0.4 PL:DP:SP:GT:GQ 38,0,37:4:0:0/1:37 +chr11 8944689 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 8947021 . A G 81.4 . DP=27;AF1=0.5554;CI95=0.5,1;DP4=2,0,7,2;MQ=48;PV4=1,1,0.091,1 PL:DP:SP:GT:GQ 111,0,7:11:0:0/1:10 +chr11 8947179 . G A 99 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=1,4,6,3;MQ=46;PV4=0.27,0.0019,5.4e-05,0.16 PL:DP:SP:GT:GQ 223,0,165:14:6:0/1:99 +chr11 8948680 . A T 82 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=1,18,2,10;MQ=49;PV4=0.54,5.9e-10,0.11,0.1 PL:DP:SP:GT:GQ 112,0,255:31:3:0/1:99 +chr11 8950875 . A T 25 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=3,1,4,0;MQ=48;PV4=1,0.29,0.016,1 PL:DP:SP:GT:GQ 55,0,76:8:0:0/1:58 +chr11 8950877 . G A 3.01 . DP=13;AF1=0.4997;CI95=0.5,0.5;DP4=5,1,3,0;MQ=49;PV4=1,0.15,0.0026,0.36 PL:DP:SP:GT:GQ 30,0,127:9:0:0/1:33 +chr11 8959370 . G A 97 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=3,5,2,8;MQ=49;PV4=0.61,0.0041,0.01,1 PL:DP:SP:GT:GQ 127,0,208:18:2:0/1:99 +chr11 8959545 . C A 17.1 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=1,1,3,0;MQ=49;PV4=0.4,0.23,0.14,1 PL:DP:SP:GT:GQ 47,0,46:5:0:0/1:46 +chr11 8973964 . tt tTCCTCt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 8975073 . TTG TTGTCCAACTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 8986638 . CC CCGCGTCTCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 9005036 . T A 42.1 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=49 PL:DP:SP:GT:GQ 75,18,0:6:0:1/1:90 +chr11 9015747 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 9024838 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 9040950 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 9047179 . C A 25 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=2,0,6,0;MQ=48;PV4=1,0.0046,0.052,1 PL:DP:SP:GT:GQ 55,0,60:8:0:0/1:57 +chr11 9049076 . T A 5.46 . DP=22;AF1=0.4999;CI95=0.5,0.5;DP4=10,1,0,5;MQ=49;PV4=0.0014,5.4e-06,0.14,0.029 PL:DP:SP:GT:GQ 34,0,236:16:29:0/1:37 +chr11 9051406 . T C 77 . DP=52;AF1=0.5;CI95=0.5,0.5;DP4=25,6,9,3;MQ=49;PV4=0.69,7.9e-07,2.5e-17,0.38 PL:DP:SP:GT:GQ 107,0,255:43:2:0/1:99 +chr11 9052423 . A C 99 . DP=23;AF1=1;CI95=1,1;DP4=0,0,9,4;MQ=46 PL:DP:SP:GT:GQ 222,39,0:13:0:1/1:99 +chr11 9055222 . A C 4.13 . DP=11;AF1=0.4998;CI95=0.5,0.5;DP4=4,0,0,4;MQ=48;PV4=0.029,0.00083,0.11,1 PL:DP:SP:GT:GQ 32,0,126:8:15:0/1:35 +chr11 9063242 . a aGTGTAAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 9069046 . G A 99 . DP=48;AF1=0.5;CI95=0.5,0.5;DP4=5,19,5,14;MQ=49;PV4=0.73,4.7e-09,3.3e-06,1 PL:DP:SP:GT:GQ 192,0,255:43:1:0/1:99 +chr11 9074362 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 9167399 . T C 32 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=46 PL:DP:SP:GT:GQ 64,9,0:3:0:1/1:63 +chr11 9169784 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 9189080 . a aACCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 9204962 . t tAGTGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 9206899 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 9229146 . C T 18.1 . DP=43;AF1=0.5;CI95=0.5,0.5;DP4=18,6,0,10;MQ=49;PV4=6.1e-05,1.5e-05,0.00078,1 PL:DP:SP:GT:GQ 48,0,255:34:42:0/1:51 +chr11 9241223 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 9308173 . T C 3.54 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=0,3,0,1;MQ=48;PV4=1,0.092,0,0.42 PL:DP:SP:GT:GQ 31,0,114:4:0:0/1:34 +chr11 9309405 . A G 99 . DP=13;AF1=1;CI95=1,1;DP4=0,0,0,11;MQ=46 PL:DP:SP:GT:GQ 151,33,0:11:0:1/1:99 +chr11 9311868 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 9332929 . A G 3.54 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=1,1,1,0;MQ=48;PV4=1,0.41,0,0.35 PL:DP:SP:GT:GQ 31,0,75:3:0:0/1:34 +chr11 9339285 . c cGAAGAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 9357741 . AGGT A 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 9370633 . A G 99 . DP=54;AF1=1;CI95=1,1;DP4=0,0,20,30;MQ=24 PL:DP:SP:GT:GQ 193,151,0:50:0:1/1:99 +chr11 9371127 . A C 4.77 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=42;PV4=1,0.23,1,0.088 PL:DP:SP:GT:GQ 33,0,32:4:0:0/1:32 +chr11 9435988 . AA AACA 4.42 . INDEL;DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 9435995 . TAG TAGAAG 7.35 . INDEL;DP=8;AF1=0.5005;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,27:2:0:0/1:30 +chr11 9441939 . A G 21 . DP=15;AF1=0.5001;CI95=0.5,0.5;DP4=1,1,4,0;MQ=49;PV4=0.33,0.05,1,0.37 PL:DP:SP:GT:GQ 51,0,35:6:0:0/1:38 +chr11 9446588 . T A 3.01 . DP=10;AF1=0.4997;CI95=0.5,0.5;DP4=2,2,0,2;MQ=49;PV4=0.47,0.061,0.12,1 PL:DP:SP:GT:GQ 30,0,141:6:3:0/1:33 +chr11 9446687 . A T 5.46 . DP=18;AF1=0.4999;CI95=0.5,0.5;DP4=2,1,4,0;MQ=49;PV4=0.43,0.16,0.053,1 PL:DP:SP:GT:GQ 34,0,66:7:0:0/1:37 +chr11 9451406 . T G 6.98 . DP=10;AF1=0.4999;CI95=0.5,0.5;DP4=0,3,0,2;MQ=48;PV4=1,0.39,0.008,0.39 PL:DP:SP:GT:GQ 36,0,67:5:0:0/1:39 +chr11 9458325 . t tCGAGATG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 9463622 . T A 8.65 . DP=14;AF1=0.5001;CI95=0.5,0.5;DP4=1,1,3,0;MQ=49;PV4=0.4,0.028,0.14,1 PL:DP:SP:GT:GQ 38,0,32:5:0:0/1:34 +chr11 9463635 . A C,G 4.99 . DP=10;AF1=0.5429;CI95=0.5,1;DP4=0,1,0,3;MQ=47;PV4=1,1,0.16,0.11 PL:DP:SP:GT:GQ 37,4,24,12,0,36:4:0:0/1:11 +chr11 9466625 . A C 3.01 . DP=19;AF1=0.4998;CI95=0.5,0.5;DP4=3,0,3,0;MQ=49;PV4=1,1,0.00066,1 PL:DP:SP:GT:GQ 30,0,46:6:0:0/1:33 +chr11 9495606 . T C 6.98 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=50;PV4=1,0.46,0.19,1 PL:DP:SP:GT:GQ 36,0,38:6:0:0/1:37 +chr11 9500183 . T TCCATTGC 5.08 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,74:3:0:0/1:44 +chr11 9571645 . tgag t 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 9627797 . A C 10.4 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,3,3,0;MQ=39;PV4=0.1,5.7e-05,0.46,1 PL:DP:SP:GT:GQ 40,0,81:6:10:0/1:43 +chr11 9640491 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 9642157 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 9667968 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 9675903 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 9676816 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 9698549 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 9706025 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 9714049 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 9714060 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 9715646 . T C 46 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=11,0,5,0;MQ=48;PV4=1,1.4e-08,3e-05,1 PL:DP:SP:GT:GQ 76,0,224:16:0:0/1:79 +chr11 9715853 . T G 35 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=4,3,0,7;MQ=48;PV4=0.07,0.089,0.07,1 PL:DP:SP:GT:GQ 65,0,130:14:12:0/1:68 +chr11 9715853 . TT TTTGT 4.42 . INDEL;DP=25;AF1=0.5;CI95=0.5,0.5;DP4=3,3,0,4;MQ=50;PV4=0.2,0.012,1,0.095 PL:DP:SP:GT:GQ 40,0,109:10:7:0/1:43 +chr11 9746201 . G A 5.46 . DP=9;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,3,0;MQ=49;PV4=1,0.024,0.14,0.48 PL:DP:SP:GT:GQ 34,0,117:7:0:0/1:37 +chr11 9754221 . C T 99 . DP=6;AF1=0.5002;CI95=0.5,0.5;DP4=0,1,0,5;MQ=44;PV4=1,0.028,0,0.29 PL:DP:SP:GT:GQ 133,0,32:6:0:0/1:35 +chr11 9754282 . G GCCAT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 9763900 . t tTGGCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 9769747 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 9780626 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 9781084 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 9783948 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 9789816 . TGCAG T 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 9804747 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 9846251 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 9861376 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 9864131 . A G,T 10.1 . DP=9;AF1=0.5939;CI95=0.5,1;DP4=1,0,5,0;MQ=49;PV4=1,1,0.089,1 PL:DP:SP:GT:GQ 55,16,34,21,0,46:6:0:0/1:7 +chr11 9867378 . C T 7.8 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,43:2:0:0/1:39 +chr11 9875329 . A C 9.31 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=42 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr11 9875353 . G T 87.3 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=42 PL:DP:SP:GT:GQ 120,15,0:5:0:1/1:75 +chr11 9895006 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 9917768 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 9980357 . A C 12 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr11 9980501 . T C 67 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=2,3,1,9;MQ=49;PV4=0.24,3e-09,0.17,1 PL:DP:SP:GT:GQ 97,0,177:15:6:0/1:99 +chr11 9981297 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 9983182 . AGG AGGAGCAGG 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 9983385 . G GGACA 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 10024311 . A G 36 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,8;MQ=49;PV4=1,4.2e-05,0.27,1 PL:DP:SP:GT:GQ 66,0,180:16:0:0/1:69 +chr11 10028268 . cact cACTact 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 10033205 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 10039286 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 10088587 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 10097633 . g gAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 10102418 . t tCTCCACG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 10107306 . T TCATAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 10115584 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 10120473 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 10121566 . c cTTGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 10220915 . a aCAGTCT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 10221398 . g gAGGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 10274693 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 10292683 . t tAGAGA 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 10298387 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 10329086 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 10332960 . C G 5.47 . DP=2;AF1=0.5019;CI95=0.5,0.5;DP4=1,0,1,0;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,21:2:0:0/1:24 +chr11 10393395 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 10420651 . ccat c 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 10424942 . CC CCTGGGGCTTTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 10432979 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 10462245 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 10462756 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 10469754 . C T 14.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=38 PL:DP:SP:GT:GQ 46,6,0:2:0:1/1:49 +chr11 10478360 . C G 3.55 . DP=2;AF1=0.5004;CI95=0.5,0.5;DP4=0,1,0,1;MQ=41;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,26:2:0:0/1:28 +chr11 10487734 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 10500323 . CAG CAGTAAG 7.41 . INDEL;DP=3;AF1=0.508;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,15:2:0:0/1:18 +chr11 10508716 . G C 13.2 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,1,4,0;MQ=49;PV4=0.43,0.025,0.11,1 PL:DP:SP:GT:GQ 43,0,97:7:0:0/1:46 +chr11 10508938 . T C 99 . DP=49;AF1=1;CI95=1,1;DP4=1,0,3,10;MQ=48;PV4=0.29,1,0.23,1 PL:DP:SP:GT:GQ 148,22,0:14:0:1/1:88 +chr11 10518519 . AG AGTG 5.08 . INDEL;DP=36;AF1=0.5;CI95=0.5,0.5;DP4=0,2,1,0;MQ=50;PV4=0.33,1,1,0.41 PL:DP:SP:GT:GQ 41,0,54:3:0:0/1:44 +chr11 10518521 . C T 99 . DP=36;AF1=1;CI95=1,1;DP4=1,0,5,22;MQ=47;PV4=0.21,0.43,0.12,1 PL:DP:SP:GT:GQ 227,58,0:28:0:1/1:99 +chr11 10518585 . A G 63 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,9;MQ=48;PV4=1,1.2e-05,0.26,1 PL:DP:SP:GT:GQ 93,0,168:16:0:0/1:96 +chr11 10518615 . G A 21 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=46;PV4=1,0.0034,1,0.27 PL:DP:SP:GT:GQ 51,0,94:6:0:0/1:54 +chr11 10521764 . T C 99 . DP=58;AF1=0.5;CI95=0.5,0.5;DP4=11,10,10,22;MQ=48;PV4=0.16,3.5e-17,1.1e-07,1 PL:DP:SP:GT:GQ 253,0,255:53:8:0/1:99 +chr11 10521850 . G A 42 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,5;MQ=45;PV4=1,0.00027,0.0043,1 PL:DP:SP:GT:GQ 72,0,181:12:0:0/1:75 +chr11 10526060 . C T 22 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=48 PL:DP:SP:GT:GQ 54,9,0:3:0:1/1:63 +chr11 10527193 . ACATGGCTATAG A 74.5 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,0,3,0;MQ=50;PV4=1,0.42,1,1 PL:DP:SP:GT:GQ 112,0,61:5:0:0/1:64 +chr11 10541889 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 10547705 . TC TCGTAAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 10564729 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 10612204 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 10644883 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 10653005 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 10727706 . A ACTAGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 10759351 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 10778276 . A G 36 . DP=14;AF1=0.6671;CI95=0.5,1;DP4=1,0,5,0;MQ=48;PV4=1,1,0.3,1 PL:DP:SP:GT:GQ 65,0,3:6:0:0/1:5 +chr11 10778277 . T C 26.5 . DP=13;AF1=0.5718;CI95=0.5,1;DP4=1,0,4,0;MQ=47;PV4=1,1,0.42,0.16 PL:DP:SP:GT:GQ 56,0,6:5:0:0/1:8 +chr11 10779564 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 10780746 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 10786142 . C T 79 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=9,6,4,4;MQ=49;PV4=0.69,1.3e-06,0.001,1 PL:DP:SP:GT:GQ 109,0,255:23:2:0/1:99 +chr11 10794702 . A T 4.77 . DP=19;AF1=0.4999;CI95=0.5,0.5;DP4=8,2,0,4;MQ=49;PV4=0.015,0.01,0.027,0.36 PL:DP:SP:GT:GQ 33,0,225:14:18:0/1:36 +chr11 10795752 . T C 35 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=3,1,5,0;MQ=49;PV4=0.44,0.082,0.043,0.00018 PL:DP:SP:GT:GQ 65,0,97:9:0:0/1:68 +chr11 10804728 . G GGC 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 10806952 . TTG TTGAGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 10821931 . AAT AATCGAT 5.08 . INDEL;DP=22;AF1=0.5;CI95=0.5,0.5;DP4=0,8,3,0;MQ=50;PV4=0.0061,1,1,0.3 PL:DP:SP:GT:GQ 41,0,192:11:22:0/1:44 +chr11 10821932 . AT ATCGGT 5.08 . INDEL;DP=23;AF1=0.5;CI95=0.5,0.5;DP4=0,8,2,0;MQ=50;PV4=0.022,1,1,0.33 PL:DP:SP:GT:GQ 41,0,196:10:17:0/1:44 +chr11 10822350 . C T 99 . DP=30;AF1=1;CI95=1,1;DP4=0,1,3,21;MQ=48;PV4=1,0.13,0.2,1 PL:DP:SP:GT:GQ 187,44,0:25:0:1/1:99 +chr11 10823079 . T C 73 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=2,1,2,3;MQ=47;PV4=1,0.03,0.24,1 PL:DP:SP:GT:GQ 103,0,101:8:0:0/1:99 +chr11 10823576 . C CCTAA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 10823815 . C T 99 . DP=57;AF1=1;CI95=1,1;DP4=0,0,36,10;MQ=47 PL:DP:SP:GT:GQ 255,138,0:46:0:1/1:99 +chr11 10824540 . G A 13.2 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 45,9,0:3:0:1/1:63 +chr11 10827400 . AACACA AACA 99 . INDEL;DP=46;AF1=0.5;CI95=0.5,0.5;DP4=26,0,12,1;MQ=50;PV4=0.33,1,1,0.2 PL:DP:SP:GT:GQ 221,0,197:39:0:0/1:99 +chr11 10828490 . TAA TAAA 99 . INDEL;DP=20;AF1=1;CI95=1,1;DP4=0,0,0,16;MQ=50 PL:DP:SP:GT:GQ 196,48,0:16:0:1/1:99 +chr11 10846829 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 10854507 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 10939918 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 10970977 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 10979189 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 11024353 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 11026169 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 11029458 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 11059530 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 11064026 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 11078205 . T TGAA 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 11116255 . G C 6.22 . DP=2;AF1=0.5039;CI95=0.5,0.5;DP4=0,1,1,0;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 35,0,18:2:0:0/1:21 +chr11 11120078 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 11122616 . C G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 11122635 . C T 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 11131729 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 11136076 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 11154974 . C A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 11158907 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 11158984 . CT CAGAT 4.42 . INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=50;PV4=1,1,1,0.077 PL:DP:SP:GT:GQ 40,0,46:4:0:0/1:42 +chr11 11158985 . TCA TCAGAACA 99 . INDEL;DP=13;AF1=0.5554;CI95=0.5,1;DP4=1,1,6,1;MQ=50;PV4=0.42,1,1,1 PL:DP:SP:GT:GQ 140,0,7:9:4:0/1:10 +chr11 11158986 . CA CAGAAGA 99 . INDEL;DP=13;AF1=0.5554;CI95=0.5,1;DP4=1,1,6,1;MQ=50;PV4=0.42,1,1,1 PL:DP:SP:GT:GQ 215,0,7:9:4:0/1:10 +chr11 11163997 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 11171659 . T C 15.9 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 47,6,0:2:0:1/1:49 +chr11 11178831 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 11196788 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 11199460 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 11199497 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 11225492 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 11227340 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 11234280 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 11239835 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 11282677 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 11286683 . TG TGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 11289618 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 11292700 . G C 60.8 . DP=23;AF1=0.6243;CI95=0.5,1;DP4=1,0,4,2;MQ=47;PV4=1,0.36,0.2,1 PL:DP:SP:GT:GQ 90,0,4:7:0:0/1:6 +chr11 11294253 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 11300700 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 11302848 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 11314538 . C T 99 . DP=31;AF1=1;CI95=1,1;DP4=1,1,19,3;MQ=46;PV4=0.31,1,0.0066,1 PL:DP:SP:GT:GQ 212,25,0:24:5:1/1:99 +chr11 11327532 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 11334453 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 11338045 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 11340232 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 11342861 . g gTC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 11348828 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 11353885 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 11354346 . T C 75.6 . DP=41;AF1=1;CI95=0.5,1;DP4=1,1,1,14;MQ=49;PV4=0.23,1,0.17,1 PL:DP:SP:GT:GQ 108,11,0:17:6:1/1:66 +chr11 11373633 . GG GGTG 12.7 . INDEL;DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 11373635 . C T 46 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=1,0,2,1;MQ=46;PV4=1,0.077,0.065,1 PL:DP:SP:GT:GQ 76,0,37:4:0:0/1:40 +chr11 11373960 . C T 9.52 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=3,6,1,1;MQ=48;PV4=1,0.0074,0.00029,1 PL:DP:SP:GT:GQ 39,0,255:11:0:0/1:42 +chr11 11374013 . CAAT C 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 11374283 . T G 5.44 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=50 PL:DP:SP:GT:GQ 36,9,0:3:0:1/1:63 +chr11 11393966 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 11398211 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 11430166 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 11449874 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 11454381 . A G 8.64 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=0,11,0,3;MQ=49;PV4=1,0.46,0.0026,1 PL:DP:SP:GT:GQ 38,0,164:14:0:0/1:41 +chr11 11463016 . CTG CTGTCACTGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 11509392 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 11519895 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 11525929 . T TCCCCAAAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 11528897 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 11529012 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 11531002 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 11531645 . C CCT 6.55 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 43,0,44:2:0:0/1:43 +chr11 11535913 . C T 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 11590165 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 11592878 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 11603319 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 11635648 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 11660267 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 11664363 . A AAGTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 11699799 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 11704024 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 11707001 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 11715262 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 11752727 . G C 3.55 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 11752753 . A T 3.02 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 11752911 . A AAGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 11783148 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 11784295 . A C 3.02 . DP=3;AF1=0.5013;CI95=0.5,0.5;DP4=0,1,1,0;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,22:2:0:0/1:24 +chr11 11818115 . C CTTCAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 11850269 . a aGACTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 11905993 . C T 57 . DP=18;AF1=1;CI95=1,1;DP4=0,0,16,0;MQ=50 PL:DP:SP:GT:GQ 90,48,0:16:0:1/1:99 +chr11 11927259 . A T 6.2 . DP=2;AF1=0.5002;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 35,0,29:2:0:0/1:31 +chr11 11944448 . AT ATCCTT 12.7 . INDEL;DP=9;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 11951685 . T C 8.64 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,4;MQ=49;PV4=1,0.049,0.036,0.13 PL:DP:SP:GT:GQ 38,0,85:8:0:0/1:41 +chr11 11952367 . C G 9.31 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr11 11964708 . TC TCCC 13.7 . INDEL;DP=6;AF1=0.5032;CI95=0.5,0.5;DP4=0,2,0,2;MQ=50;PV4=1,1,1,0.084 PL:DP:SP:GT:GQ 51,0,19:4:0:0/1:22 +chr11 11969406 . A G 9.31 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=45 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr11 11969439 . CAGAG CAG 21.5 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=8,0,2,0;MQ=50;PV4=1,0.25,1,1 PL:DP:SP:GT:GQ 59,0,193:10:0:0/1:62 +chr11 11970003 . A C 18.1 . DP=11;AF1=0.501;CI95=0.5,0.5;DP4=2,0,3,0;MQ=48;PV4=1,1,0.074,1 PL:DP:SP:GT:GQ 48,0,24:5:0:0/1:27 +chr11 11971506 . T G 32 . DP=15;AF1=0.5003;CI95=0.5,0.5;DP4=1,0,1,3;MQ=47;PV4=0.4,0.014,0.23,0.49 PL:DP:SP:GT:GQ 62,0,29:5:0:0/1:32 +chr11 11986427 . A ACGACGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 12000058 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 12006092 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 12020972 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 12026989 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 12050261 . GT GTCCT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 12089811 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 12149365 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 12173049 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 12173352 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 12197072 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 12217913 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 12219606 . G C 13 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr11 12242008 . A G 4.13 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=1,1,1,0;MQ=48;PV4=1,0.22,0,0.49 PL:DP:SP:GT:GQ 32,0,90:3:0:0/1:35 +chr11 12248586 . A T 13.2 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=9,5,6,0;MQ=49;PV4=0.26,0.13,4.6e-08,1 PL:DP:SP:GT:GQ 43,0,230:20:6:0/1:46 +chr11 12265542 . A G 99 . DP=61;AF1=0.5;CI95=0.5,0.5;DP4=18,15,10,13;MQ=47;PV4=0.59,2.4e-09,1.3e-30,1 PL:DP:SP:GT:GQ 255,0,255:56:2:0/1:99 +chr11 12279978 . G C 15.2 . DP=6;AF1=0.5101;CI95=0.5,0.5;DP4=1,0,3,0;MQ=48;PV4=1,0.26,0.45,1 PL:DP:SP:GT:GQ 45,0,14:4:0:0/1:17 +chr11 12289337 . cag cAGTGGTGGag 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 12296117 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 12309120 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 12313887 . C G 91 . DP=26;AF1=1;CI95=1,1;DP4=0,0,2,6;MQ=48 PL:DP:SP:GT:GQ 124,24,0:8:0:1/1:96 +chr11 12315084 . G A 5.46 . DP=3;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,32:2:0:0/1:33 +chr11 12315186 . G A 53 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=3,1,7,0;MQ=48;PV4=0.36,0.00015,3.8e-05,1 PL:DP:SP:GT:GQ 83,0,134:11:0:0/1:86 +chr11 12315848 . C T 41 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=1,7,0,9;MQ=49;PV4=0.47,2.5e-06,0.034,1 PL:DP:SP:GT:GQ 71,0,205:17:0:0/1:74 +chr11 12315891 . G A 99 . DP=21;AF1=1;CI95=1,1;DP4=0,0,1,18;MQ=49 PL:DP:SP:GT:GQ 156,57,0:19:0:1/1:99 +chr11 12345459 . C T 37.8 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=43 PL:DP:SP:GT:GQ 69,6,0:2:0:1/1:49 +chr11 12355522 . a aGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 12371475 . T A 29 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=1,3,0,5;MQ=47;PV4=0.44,0.21,0.041,1 PL:DP:SP:GT:GQ 59,0,86:9:0:0/1:62 +chr11 12371481 . T C 5.47 . DP=21;AF1=0.5012;CI95=0.5,0.5;DP4=0,2,0,2;MQ=47;PV4=1,1,0.18,1 PL:DP:SP:GT:GQ 34,0,23:4:0:0/1:26 +chr11 12379792 . G C 9.2 . DP=17;AF1=0.5939;CI95=0.5,1;DP4=1,0,3,0;MQ=49;PV4=1,1,0.33,1 PL:DP:SP:GT:GQ 38,0,5:4:0:0/1:7 +chr11 12384950 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 12433216 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 12443049 . G GCAGACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 12449341 . G C 4.77 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 12449362 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 12477690 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 12489799 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 12490387 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 12505922 . A T 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 12505945 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 12532939 . C T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 12551928 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 12573513 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 12693258 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 12718501 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 12764945 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 12766205 . ttttataa t 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 12770356 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 12796712 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 12806794 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 12815862 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 12816728 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 12825530 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 12875607 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 12888065 . C CAACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 12944911 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 12970064 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 12987869 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 12991017 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 13011108 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 13050932 . G GTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 13069299 . T C 29.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:DP:SP:GT:GQ 61,6,0:2:0:1/1:49 +chr11 13072394 . G GCTTATTGGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 13100444 . GA GACA 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 13119553 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 13123592 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 13132536 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 13164176 . T A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 13220903 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 13226366 . AA AAGACGTCGTGA 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 13230891 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 13231609 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 13250501 . ctt cTTtt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 13250605 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 13254926 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 13268415 . TACATA T 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 13292827 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 13324237 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 13329003 . AG AGGCCGGGCCCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 13337694 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 13344303 . a aTGT 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 13354559 . G A 4.61 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 13382060 . CT CTCTGT 5.08 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,68:3:0:0/1:44 +chr11 13394584 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 13394670 . G C 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 13395729 . T C 17.1 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=4,4,0,4;MQ=49;PV4=0.21,0.1,0.0053,0.24 PL:DP:SP:GT:GQ 47,0,188:12:7:0/1:50 +chr11 13402503 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 13402672 . A C 7.8 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=47;PV4=1,0.32,0.07,1 PL:DP:SP:GT:GQ 37,0,46:6:0:0/1:39 +chr11 13402677 . G C 36 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=3,0,5,0;MQ=47;PV4=1,0.23,0.04,1 PL:DP:SP:GT:GQ 66,0,57:8:0:0/1:59 +chr11 13444442 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 13466306 . GT GTTACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 13514417 . C T 79 . DP=11;AF1=1;CI95=1,1;DP4=0,0,0,10;MQ=49 PL:DP:SP:GT:GQ 112,30,0:10:0:1/1:99 +chr11 13533647 . g gCTCTTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 13536238 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 13546659 . A AGGTCGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 13557347 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 13663117 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 13683466 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 13701180 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 13709804 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 13727191 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 13735725 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 13735740 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 13746708 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 13759772 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 13779042 . C T 11.1 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 +chr11 13779060 . T C 39.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,1;MQ=49 PL:DP:SP:GT:GQ 72,12,0:4:0:1/1:72 +chr11 13784107 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 13786663 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 13793083 . CA CAGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 13797329 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 13827387 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 13879231 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 13942136 . Ttctctctctctctctctc Ttctctctctctctctc 7.35 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 13992700 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 13999154 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 14016189 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 14016853 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 14039624 . CT CTAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 14041300 . C A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 14042951 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 14079442 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 14079465 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 14085029 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 14095072 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 14154028 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 14210091 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 14236072 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 14245246 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 14263018 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 14263359 . T TTCAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 14279380 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 14298163 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 14303282 . T A 20 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=1,5,0,4;MQ=48;PV4=1,0.36,0.16,1 PL:DP:SP:GT:GQ 50,0,100:10:0:0/1:53 +chr11 14303283 . T A 10.4 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=1,3,0,3;MQ=49;PV4=1,0.29,0.32,0.29 PL:DP:SP:GT:GQ 40,0,82:7:0:0/1:43 +chr11 14316447 . T TTGACTTTCCAC 5.08 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,1;MQ=50;PV4=1,0.4,1,0.37 PL:DP:SP:GT:GQ 41,0,90:3:0:0/1:44 +chr11 14320637 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 14323091 . g gTAACTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 14331450 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 14340249 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 14364411 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 14367694 . a aTTATG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 14384252 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 14392294 . t tTCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 14416979 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 14438242 . ATTT AT 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 14444978 . taa tAACAaa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 14456715 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 14462312 . GCC GCCTCC 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,91:3:0:0/1:44 +chr11 14464584 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 14472083 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 14476228 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 14480016 . GTCAT GT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 14480349 . G A 5.47 . DP=2;AF1=0.5015;CI95=0.5,0.5;DP4=0,1,0,1;MQ=41;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,22:2:0:0/1:25 +chr11 14484187 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 14519990 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 14526911 . A ATC 7.38 . INDEL;DP=3;AF1=0.504;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,18:2:0:0/1:21 +chr11 14530535 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 14532338 . C T 23.8 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=41 PL:DP:SP:GT:GQ 55,6,0:2:0:1/1:49 +chr11 14535386 . CAA CAATGAA 5.08 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,2,1,0;MQ=50;PV4=0.33,0.19,1,1 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr11 14540671 . A G 12 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr11 14563056 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 14583608 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 14588278 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 14609095 . t tGCCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 14619261 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 14625675 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 14678012 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 14691487 . TC TCACTGAGAAC 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 14695199 . T TATA 7.35 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 14695786 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 14705187 . ct cTTt 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 14710016 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 14719031 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 14772152 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 14774276 . ATAA ATAAACGGGTAA 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 14788331 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 14806821 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 14810762 . A G 66 . DP=39;AF1=0.5001;CI95=0.5,0.5;DP4=1,1,5,2;MQ=47;PV4=1,0.065,0.16,1 PL:DP:SP:GT:GQ 96,0,34:9:0:0/1:37 +chr11 14825704 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 14840008 . ga gACCCCa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 14843861 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 14857382 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 14879561 . AA AAAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 14880527 . TAAA T 12.7 . INDEL;DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 14892864 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 14903771 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 14919223 . CA CAA 3.25 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 14972127 . CA CATTTCTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 14973792 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 14990117 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 15004674 . taaaa t 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 15094254 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 15112318 . gt gTTTGCt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 15117013 . C A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 15135078 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 15137312 . T TCCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 15146133 . TTG TTGTG 7.35 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 15170686 . G A 99 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=14,1,8,3;MQ=48;PV4=0.28,2.3e-06,9.6e-05,1 PL:DP:SP:GT:GQ 145,0,255:26:6:0/1:99 +chr11 15197186 . A G 5.29 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr11 15199653 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 15199957 . T C 3.54 . DP=19;AF1=0.4998;CI95=0.5,0.5;DP4=0,2,0,3;MQ=50;PV4=1,0.058,0.25,1 PL:DP:SP:GT:GQ 31,0,60:5:0:0/1:34 +chr11 15199975 . C A 13.2 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=2,2,0,4;MQ=49;PV4=0.43,0.093,0.1,1 PL:DP:SP:GT:GQ 43,0,94:8:4:0/1:46 +chr11 15208275 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 15229783 . A ATCGGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 15243047 . G A 14.2 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=3,8,2,3;MQ=49;PV4=1,0.0034,0.097,1 PL:DP:SP:GT:GQ 44,0,255:16:0:0/1:47 +chr11 15255007 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 15255418 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 15295072 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 15347938 . G GAC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 15356349 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 15361993 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 15363947 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 15366461 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 15368255 . CAGA CA 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 15377640 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 15420380 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 15435312 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 15437658 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 15455901 . TTC TTCGTC 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 15458904 . TTA T 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 15459865 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 15474060 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 15484379 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 15524815 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 15529011 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 15542518 . t tGCGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 15557865 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 15564226 . A C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 15602125 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 15620143 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 15626868 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 15635666 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 15663072 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 15665333 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 15681963 . ctc cTCAtc 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 15713614 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 15717965 . TC TCTCGACTTAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 15724450 . AG AGATCCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 15730250 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 15731545 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 15731568 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 15738045 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 15742065 . A AAGGTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 15783140 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 15812940 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 15822581 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 15825934 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 15858529 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 15886629 . T TTAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 15900855 . ca cATa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 15920327 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 15920363 . a aTGCGGCCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 15930249 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 15984426 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 16013065 . C CGAGGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 16027750 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 16044808 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 16071513 . T G 13.9 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr11 16112813 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 16117000 . GG GGAG 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 16133409 . C A 9.52 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=1,5,0,5;MQ=49;PV4=1,0.024,0.099,1 PL:DP:SP:GT:GQ 39,0,99:11:0:0/1:42 +chr11 16135539 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 16141765 . t tTCC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 16202961 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 16203913 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 16207607 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 16227318 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 16339920 . T TATATCCTTC 7.49 . INDEL;DP=6;AF1=0.5207;CI95=0.5,1;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,11:2:0:0/1:14 +chr11 16380737 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 16452710 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 16455784 . CCA CCACA 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 16463938 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 16574490 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 16611491 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 16734681 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 16742651 . tc tCGGTAc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 16760244 . T G 62 . DP=19;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=49 PL:DP:SP:GT:GQ 95,24,0:8:0:1/1:96 +chr11 16760307 . C T 3.54 . DP=16;AF1=0.4998;CI95=0.5,0.5;DP4=5,1,2,1;MQ=50;PV4=1,0.16,0.0092,0.14 PL:DP:SP:GT:GQ 31,0,104:9:0:0/1:34 +chr11 16792420 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 16816369 . A G 5.46 . DP=3;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,1,0;MQ=48;PV4=1,1,0,1 PL:DP:SP:GT:GQ 34,0,60:3:0:0/1:37 +chr11 16822281 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 16823497 . gt gTt 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 16827574 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 16835671 . GAAGGA G 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 16836287 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 16848393 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 16876618 . G A 99 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,6;MQ=45;PV4=1,0.0032,0,1 PL:DP:SP:GT:GQ 148,0,102:9:0:0/1:99 +chr11 16892863 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 16915975 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 16934278 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 16968391 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 16995049 . G GGTGGGGGCAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 17015395 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 17022309 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 17033736 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 17034729 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 17062283 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 17073813 . TC T 38.7 . INDEL;DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=34 PL:DP:SP:GT:GQ 79,15,0:5:0:1/1:75 +chr11 17092094 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 17096059 . A G 34.5 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=49 PL:DP:SP:GT:GQ 67,12,0:4:0:1/1:72 +chr11 17098721 . G C 25 . DP=11;AF1=0.5005;CI95=0.5,0.5;DP4=2,0,4,0;MQ=47;PV4=1,0.38,0.43,0.11 PL:DP:SP:GT:GQ 55,0,27:6:0:0/1:30 +chr11 17098728 . A T 14.2 . DP=10;AF1=0.505;CI95=0.5,0.5;DP4=1,0,4,0;MQ=47;PV4=1,0.25,0.32,1 PL:DP:SP:GT:GQ 44,0,17:5:0:0/1:20 +chr11 17104548 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 17111272 . A G 10.2 . DP=21;AF1=0.6243;CI95=0.5,1;DP4=1,0,5,0;MQ=50;PV4=1,0.0055,0.35,1 PL:DP:SP:GT:GQ 39,0,4:6:0:0/1:6 +chr11 17138490 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 17140747 . T A 6.02 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr11 17157712 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 17171953 . A T 10.4 . DP=5;AF1=0.5025;CI95=0.5,0.5;DP4=2,0,2,0;MQ=46;PV4=1,1,0.092,0.11 PL:DP:SP:GT:GQ 40,0,20:4:0:0/1:23 +chr11 17172133 . T C 53 . DP=48;AF1=0.5;CI95=0.5,0.5;DP4=6,23,5,8;MQ=49;PV4=0.27,1.7e-12,0.02,1 PL:DP:SP:GT:GQ 83,0,255:42:6:0/1:86 +chr11 17190329 . T C 32 . DP=43;AF1=0.5;CI95=0.5,0.5;DP4=18,2,0,9;MQ=49;PV4=5.5e-06,0.00016,1.4e-07,1 PL:DP:SP:GT:GQ 62,0,255:29:53:0/1:65 +chr11 17218442 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 17250019 . G T 84.1 . DP=8;AF1=0.5163;CI95=0.5,1;DP4=1,0,4,1;MQ=46;PV4=1,1,0.11,0.046 PL:DP:SP:GT:GQ 114,0,12:6:0:0/1:15 +chr11 17263058 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 17314154 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 17316526 . C T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 17323455 . t tGTGC 12.7 . INDEL;DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 17330061 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 17332571 . C G 9.52 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=4,5,0,3;MQ=48;PV4=0.49,0.17,0.00013,0.35 PL:DP:SP:GT:GQ 39,0,219:12:3:0/1:42 +chr11 17332577 . G T 3.54 . DP=17;AF1=0.4998;CI95=0.5,0.5;DP4=2,4,0,4;MQ=48;PV4=0.47,0.15,0.033,1 PL:DP:SP:GT:GQ 31,0,126:10:3:0/1:34 +chr11 17333580 . G A 6.2 . DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,2,0;MQ=49;PV4=0.33,0.26,0.048,0.49 PL:DP:SP:GT:GQ 35,0,51:4:5:0/1:38 +chr11 17351873 . TAAAAA TAAAAAA 26.6 . INDEL;DP=19;AF1=0.5163;CI95=0.5,1;DP4=0,3,0,11;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 64,0,12:14:0:0/1:15 +chr11 17352477 . TACAACAA TACAA 38.5 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=1,3,0,3;MQ=50;PV4=1,0.16,1,0.3 PL:DP:SP:GT:GQ 76,0,132:7:0:0/1:79 +chr11 17353832 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 17387191 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 17387613 . G C 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 17390911 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 17408630 . C T 99 . DP=47;AF1=0.5;CI95=0.5,0.5;DP4=16,3,15,9;MQ=46;PV4=0.17,1,3.6e-25,1 PL:DP:SP:GT:GQ 255,0,251:43:8:0/1:99 +chr11 17412399 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 17418477 . C A 92 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=14,8,7,5;MQ=49;PV4=1,3.6e-09,0.001,0.48 PL:DP:SP:GT:GQ 122,0,255:34:0:0/1:99 +chr11 17422052 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 17427721 . G GCCTCAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 17429838 . C A 3.01 . DP=4;AF1=0.4997;CI95=0.5,0.5;DP4=2,0,1,0;MQ=48;PV4=1,0.15,0,1 PL:DP:SP:GT:GQ 30,0,83:3:0:0/1:33 +chr11 17430131 . T C 8.64 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=0,9,0,4;MQ=49;PV4=1,0.17,0.14,0.038 PL:DP:SP:GT:GQ 38,0,129:13:0:0/1:41 +chr11 17433995 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 17436936 . A G 99 . DP=17;AF1=1;CI95=1,1;DP4=0,0,0,13;MQ=48 PL:DP:SP:GT:GQ 145,39,0:13:0:1/1:99 +chr11 17438357 . A G 3.56 . DP=4;AF1=0.5038;CI95=0.5,0.5;DP4=1,0,2,0;MQ=49;PV4=1,0.21,0.33,0.46 PL:DP:SP:GT:GQ 31,0,18:3:0:0/1:21 +chr11 17445539 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 17448704 . G A 99 . DP=17;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=43 PL:DP:SP:GT:GQ 157,27,0:9:0:1/1:99 +chr11 17477696 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 17491571 . C T 12 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr11 17505652 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 17517235 . A G 6.79 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr11 17518180 . T C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 17520681 . G T 6.02 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=50 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr11 17524737 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 17531449 . G T 99 . DP=11;AF1=1;CI95=1,1;DP4=0,0,0,10;MQ=45 PL:DP:SP:GT:GQ 140,30,0:10:0:1/1:99 +chr11 17532102 . C T 67 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=2,10,1,8;MQ=49;PV4=1,3.8e-05,0.00039,1 PL:DP:SP:GT:GQ 97,0,255:21:0:0/1:99 +chr11 17533635 . G A 37.1 . DP=24;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=50 PL:DP:SP:GT:GQ 70,21,0:7:0:1/1:84 +chr11 17534732 . GGG GGGAAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 17542439 . T C 16.1 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=1,1,4,1;MQ=50;PV4=1,0.00095,1,1 PL:DP:SP:GT:GQ 46,0,37:7:0:0/1:39 +chr11 17544845 . C T 4.13 . DP=8;AF1=0.4998;CI95=0.5,0.5;DP4=0,2,1,1;MQ=49;PV4=1,0.093,0.048,1 PL:DP:SP:GT:GQ 32,0,55:4:0:0/1:35 +chr11 17545091 . A G 4.61 . DP=21;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 17548401 . CG C 88.5 . INDEL;DP=34;AF1=0.5;CI95=0.5,0.5;DP4=1,8,0,20;MQ=50;PV4=0.31,2.3e-12,1,1 PL:DP:SP:GT:GQ 126,0,157:29:0:0/1:99 +chr11 17548874 . C T 30 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=3,12,0,7;MQ=49;PV4=0.52,0.17,0.01,1 PL:DP:SP:GT:GQ 60,0,199:22:3:0/1:63 +chr11 17552642 . A T 19 . DP=7;AF1=0.6671;CI95=0.5,1;DP4=1,0,4,0;MQ=46;PV4=1,1,0.25,0.35 PL:DP:SP:GT:GQ 48,0,3:5:0:0/1:5 +chr11 17564050 . CGA CGAAGATGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 17589092 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 17594347 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 17598498 . C CTG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 17599763 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 17602131 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 17603847 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 17612119 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 17623710 . TGGGC T 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 17628620 . c cCGCGCGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 17632410 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 17655484 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 17664434 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 17664440 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 17691132 . tc tCCCCGGCc 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 17706008 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 17711358 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 17751675 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 17753107 . aa aATGCGGa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 17753831 . AC ACTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 17757666 . G T 5.46 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,44:2:0:0/1:37 +chr11 17798643 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 17799009 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 17804735 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 17810863 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 17834476 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 17834945 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 17835196 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 17858267 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 17876644 . AT ATTTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 17880438 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 17884232 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 17896871 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 17965896 . act aCTGCTct 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 17981047 . C T 96 . DP=54;AF1=0.5;CI95=0.5,0.5;DP4=15,20,0,11;MQ=48;PV4=0.0087,0.092,1.5e-18,1 PL:DP:SP:GT:GQ 126,0,255:46:21:0/1:99 +chr11 17981704 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 18022947 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 18029447 . A T 21 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=3,0,4,0;MQ=49;PV4=1,0.031,0.12,1 PL:DP:SP:GT:GQ 51,0,69:7:0:0/1:54 +chr11 18039395 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 18047255 . G T 39 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=5,13,1,14;MQ=50;PV4=0.19,5.7e-19,0.035,0.48 PL:DP:SP:GT:GQ 69,0,255:33:7:0/1:72 +chr11 18105302 . T C 99 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=0,11,0,13;MQ=47;PV4=1,5.4e-07,4.6e-06,1 PL:DP:SP:GT:GQ 140,0,210:24:0:0/1:99 +chr11 18108859 . ct cTTCGTGCGt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 18115265 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 18124871 . T G 23 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=14,8,0,9;MQ=49;PV4=0.0013,0.00023,2.1e-05,1 PL:DP:SP:GT:GQ 53,0,255:31:29:0/1:56 +chr11 18158993 . T C 99 . DP=47;AF1=0.5;CI95=0.5,0.5;DP4=9,8,16,6;MQ=49;PV4=0.31,6.7e-10,0.0065,1 PL:DP:SP:GT:GQ 174,0,255:39:5:0/1:99 +chr11 18159169 . A G 10.2 . DP=26;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr11 18164400 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 18170410 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 18170434 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 18194878 . T G 13.2 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,2,0;MQ=47;PV4=0.33,0.13,0.24,0.077 PL:DP:SP:GT:GQ 43,0,39:3:0:0/1:41 +chr11 18195051 . T C 62.1 . DP=32;AF1=1;CI95=0.5,1;DP4=0,0,3,3;MQ=49 PL:DP:SP:GT:GQ 95,18,0:6:0:1/1:90 +chr11 18208024 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 18218587 . ACAGT A 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 18231348 . G T 4.13 . DP=15;AF1=0.4998;CI95=0.5,0.5;DP4=2,1,4,0;MQ=49;PV4=0.43,0.2,1,0.3 PL:DP:SP:GT:GQ 32,0,62:7:0:0/1:35 +chr11 18231479 . TA TGAAAA 5.08 . INDEL;DP=9;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,39:3:0:0/1:40 +chr11 18231631 . G T 3.54 . DP=14;AF1=0.4998;CI95=0.5,0.5;DP4=4,1,3,0;MQ=50;PV4=1,0.063,0.028,1 PL:DP:SP:GT:GQ 31,0,136:8:0:0/1:34 +chr11 18244656 . t tAGCC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 18253176 . C T 99 . DP=40;AF1=1;CI95=1,1;DP4=2,0,14,16;MQ=45;PV4=0.48,1,0.0018,1 PL:DP:SP:GT:GQ 255,56,0:32:3:1/1:99 +chr11 18253397 . T TC 4.42 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 18267027 . C T 99 . DP=20;AF1=1;CI95=0.5,1;DP4=1,0,5,5;MQ=44;PV4=1,1,0.43,0.38 PL:DP:SP:GT:GQ 192,8,0:11:0:1/1:56 +chr11 18267463 . A G 57 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,1,7,0;MQ=48;PV4=0.22,0.0017,0.12,0.11 PL:DP:SP:GT:GQ 87,0,61:9:0:0/1:64 +chr11 18269424 . C T 3.01 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,44:2:0:0/1:33 +chr11 18278185 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 18286399 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 18290874 . T C 8.65 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 18291400 . TGAG TGAGAG 7.35 . INDEL;DP=6;AF1=0.5004;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,28:2:0:0/1:31 +chr11 18294384 . A AACAAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 18295752 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 18317458 . T A 67 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=4,0,6,0;MQ=47;PV4=1,0.00042,0.018,0.26 PL:DP:SP:GT:GQ 97,0,126:10:0:0/1:99 +chr11 18317699 . C T 6.98 . DP=9;AF1=0.4999;CI95=0.5,0.5;DP4=1,1,0,3;MQ=50;PV4=0.4,0.022,0.11,0.21 PL:DP:SP:GT:GQ 36,0,49:5:0:0/1:39 +chr11 18319279 . G T 86 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=4,15,3,7;MQ=49;PV4=0.66,3.7e-10,1.5e-05,0.46 PL:DP:SP:GT:GQ 116,0,255:29:2:0/1:99 +chr11 18344836 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 18357270 . A G 99 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=17,0,13,0;MQ=47;PV4=1,5.3e-07,1.9e-29,0.18 PL:DP:SP:GT:GQ 164,0,239:30:0:0/1:99 +chr11 18360963 . T A 4.15 . DP=2;AF1=0.5049;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,17:2:0:0/1:20 +chr11 18360994 . T TGCAC 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 18361187 . T C 3.62 . DP=18;AF1=0.5161;CI95=0.5,0.5;DP4=0,1,0,2;MQ=49;PV4=1,1,0,0.46 PL:DP:SP:GT:GQ 31,0,12:3:0:0/1:15 +chr11 18371226 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 18390331 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 18427099 . C A 8.64 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=11,7,0,9;MQ=48;PV4=0.003,0.043,8.6e-05,0.086 PL:DP:SP:GT:GQ 38,0,252:27:25:0/1:41 +chr11 18427104 . T G 42 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=15,2,0,12;MQ=48;PV4=1.8e-06,7.7e-07,0.00031,0.15 PL:DP:SP:GT:GQ 72,0,255:29:58:0/1:75 +chr11 18467821 . T C 34 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=3,1,5,0;MQ=48;PV4=0.44,0.34,0.013,1 PL:DP:SP:GT:GQ 64,0,72:9:0:0/1:66 +chr11 18500230 . A C 9.31 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr11 18503159 . C T 81 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=9,4,3,5;MQ=48;PV4=0.2,6.9e-06,1.2e-06,1 PL:DP:SP:GT:GQ 111,0,255:21:7:0/1:99 +chr11 18505552 . G A 99 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=7,4,10,4;MQ=48;PV4=1,1.3e-05,0.00036,0.11 PL:DP:SP:GT:GQ 163,0,255:25:0:0/1:99 +chr11 18532638 . G C 6.2 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 35,0,44:2:0:0/1:37 +chr11 18553792 . A G 3.01 . DP=11;AF1=0.4998;CI95=0.5,0.5;DP4=3,0,2,0;MQ=47;PV4=1,0.44,0.2,1 PL:DP:SP:GT:GQ 30,0,53:5:0:0/1:33 +chr11 18555949 . T C 23 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=13,5,6,1;MQ=50;PV4=0.64,3e-15,3.3e-07,1 PL:DP:SP:GT:GQ 53,0,255:25:2:0/1:56 +chr11 18570305 . A ACG 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 18591714 . TTA TTCTA 12.7 . INDEL;DP=7;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 18592374 . T TGTTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 18596138 . G C 12.3 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 18610493 . C G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 18612799 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 18636607 . C A 16.1 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=1,8,0,3;MQ=48;PV4=1,0.45,1.9e-08,1 PL:DP:SP:GT:GQ 46,0,164:12:0:0/1:49 +chr11 18648107 . Atgattaa A 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 18649620 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 18652865 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 18686567 . C G 4.61 . DP=26;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 18723549 . C A 4.13 . DP=45;AF1=0.4998;CI95=0.5,0.5;DP4=8,14,0,7;MQ=50;PV4=0.14,0.011,0.0006,0.25 PL:DP:SP:GT:GQ 32,0,255:29:8:0/1:35 +chr11 18729115 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 18729265 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 18732119 . T G 50.5 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,3,1;MQ=48 PL:DP:SP:GT:GQ 83,12,0:4:0:1/1:72 +chr11 18732200 . A T 3.01 . DP=16;AF1=0.4997;CI95=0.5,0.5;DP4=2,2,3,0;MQ=48;PV4=0.43,0.49,0.038,1 PL:DP:SP:GT:GQ 30,0,66:7:4:0/1:33 +chr11 18732426 . T G 23 . DP=23;AF1=0.6671;CI95=0.5,1;DP4=1,0,0,4;MQ=49;PV4=0.2,1,0.26,0.33 PL:DP:SP:GT:GQ 52,0,3:5:0:0/1:5 +chr11 18735480 . G A 47 . DP=48;AF1=0.5;CI95=0.5,0.5;DP4=14,9,19,2;MQ=50;PV4=0.036,4.2e-20,0.011,1 PL:DP:SP:GT:GQ 77,0,255:44:14:0/1:80 +chr11 18735753 . G A 83.1 . DP=33;AF1=1;CI95=1,1;DP4=0,0,3,4;MQ=49 PL:DP:SP:GT:GQ 116,21,0:7:0:1/1:84 +chr11 18735947 . T C 99 . DP=46;AF1=1;CI95=1,1;DP4=1,0,25,12;MQ=46;PV4=1,1,0.15,1 PL:DP:SP:GT:GQ 255,97,0:38:0:1/1:99 +chr11 18737095 . C T 61.1 . DP=44;AF1=1;CI95=0.5,1;DP4=1,0,4,3;MQ=49;PV4=1,1,0.34,1 PL:DP:SP:GT:GQ 92,5,0:8:0:1/1:46 +chr11 18738281 . C T 99 . DP=62;AF1=1;CI95=1,1;DP4=1,1,28,22;MQ=48;PV4=1,1,0.083,1 PL:DP:SP:GT:GQ 236,113,0:52:0:1/1:99 +chr11 18748239 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 18751067 . A T 6.2 . DP=12;AF1=0.4999;CI95=0.5,0.5;DP4=0,3,0,2;MQ=49;PV4=1,1,0.014,1 PL:DP:SP:GT:GQ 35,0,44:5:0:0/1:37 +chr11 18751067 . AG AGTTAGG 4.42 . INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 40,0,36:4:0:0/1:38 +chr11 18754679 . A G 42 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=13,0,6,0;MQ=49;PV4=1,0.0001,0.0017,0.2 PL:DP:SP:GT:GQ 72,0,225:19:0:0/1:75 +chr11 18763144 . G GTGTCGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 18775747 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 18781552 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 18787259 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 18787389 . CC CCACTC 7.35 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 18804205 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 18822508 . gg gGTATCCg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 18853224 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 18877495 . a aTCATCGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 18886976 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 18892702 . A C 16.9 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=47 PL:DP:SP:GT:GQ 48,6,0:2:0:1/1:49 +chr11 18893056 . T A 37.1 . DP=18;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=49 PL:DP:SP:GT:GQ 70,21,0:7:0:1/1:84 +chr11 18909134 . C T 99 . DP=18;AF1=1;CI95=1,1;DP4=0,0,2,15;MQ=49 PL:DP:SP:GT:GQ 159,51,0:17:0:1/1:99 +chr11 18918589 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 18977638 . G GTGATT 7.35 . INDEL;DP=2;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,28:2:0:0/1:31 +chr11 18977927 . A T 3.55 . DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 18978096 . C T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 18978456 . G A 19.8 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:DP:SP:GT:GQ 51,6,0:2:0:1/1:49 +chr11 18993843 . GG GGTTG 3.25 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,2,1,0;MQ=50;PV4=1,1,1,0.33 PL:DP:SP:GT:GQ 38,0,130:4:0:0/1:41 +chr11 18994005 . T C 99 . DP=12;AF1=1;CI95=1,1;DP4=0,0,8,1;MQ=45 PL:DP:SP:GT:GQ 189,27,0:9:0:1/1:99 +chr11 18994262 . T C 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 19038559 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 19071567 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 19105899 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 19152260 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 19163662 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 19228984 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 19251968 . T C 7.8 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=48;PV4=1,0.035,0.21,1 PL:DP:SP:GT:GQ 37,0,80:4:0:0/1:40 +chr11 19256250 . C T 99 . DP=24;AF1=1;CI95=1,1;DP4=1,0,18,1;MQ=48;PV4=1,0.22,0.21,1 PL:DP:SP:GT:GQ 135,32,0:20:0:1/1:99 +chr11 19268413 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 19288741 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 19290875 . g gCAT 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 19291480 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 19296125 . A G 25.8 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=40 PL:DP:SP:GT:GQ 57,6,0:2:0:1/1:49 +chr11 19296132 . T G 36 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,3;MQ=44;PV4=0.14,0.21,0.3,1 PL:DP:SP:GT:GQ 66,0,64:7:8:0/1:65 +chr11 19296135 . C T 3.54 . DP=10;AF1=0.4998;CI95=0.5,0.5;DP4=3,0,0,2;MQ=44;PV4=0.1,0.25,1,0.36 PL:DP:SP:GT:GQ 31,0,73:5:10:0/1:34 +chr11 19296355 . A G 6.02 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr11 19321154 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 19321968 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 19324976 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 19340892 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 19361910 . C CAGAAATTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 19379651 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 19391309 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 19396419 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 19428498 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 19431297 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 19451091 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 19452577 . TT TTAAAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 19479044 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 19555228 . T A 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 19556944 . G GTTATAAGCGCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 19562910 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 19577330 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 19587369 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 19587385 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 19625766 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 19639038 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 19650815 . ttaggca t 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 19692180 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 19717086 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 19738953 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 19772285 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 19839583 . G T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 19844198 . A AACCTGGGGG 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 19853137 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 19864609 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 19896538 . A G 14.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 19905031 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 19911152 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 19922805 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 19947767 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 19954949 . A T 4.13 . DP=8;AF1=0.4998;CI95=0.5,0.5;DP4=3,0,0,2;MQ=48;PV4=0.1,0.058,0.022,1 PL:DP:SP:GT:GQ 32,0,96:5:10:0/1:35 +chr11 19955500 . A G 62.1 . DP=22;AF1=1;CI95=0.5,1;DP4=0,0,3,3;MQ=48 PL:DP:SP:GT:GQ 95,18,0:6:0:1/1:90 +chr11 19967872 . T C 55 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=4,0,6,0;MQ=48;PV4=1,1.1e-05,0.047,0.087 PL:DP:SP:GT:GQ 85,0,129:10:0:0/1:88 +chr11 19970501 . T C 5.46 . DP=14;AF1=0.4999;CI95=0.5,0.5;DP4=5,3,0,3;MQ=49;PV4=0.18,0.0065,0.08,0.46 PL:DP:SP:GT:GQ 34,0,251:11:7:0/1:37 +chr11 19970558 . T C 99 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,2;MQ=44 PL:DP:SP:GT:GQ 136,18,0:6:0:1/1:90 +chr11 19970579 . C T 24.8 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=38 PL:DP:SP:GT:GQ 56,6,0:2:0:1/1:49 +chr11 19970598 . A T 6.79 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=44 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr11 20005802 . G A 44 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=10,14,1,4;MQ=48;PV4=0.62,0.092,8.9e-06,1 PL:DP:SP:GT:GQ 74,0,255:29:2:0/1:77 +chr11 20065938 . C T 43 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=46 PL:DP:SP:GT:GQ 75,9,0:3:0:1/1:63 +chr11 20067064 . C T 99 . DP=48;AF1=1;CI95=1,1;DP4=0,1,21,19;MQ=48;PV4=0.49,0.094,0.18,1 PL:DP:SP:GT:GQ 255,91,0:41:0:1/1:99 +chr11 20089792 . G C 66 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,4,1,2;MQ=48;PV4=1,0.23,0,1 PL:DP:SP:GT:GQ 96,0,220:9:0:0/1:99 +chr11 20089944 . T C 99 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=3,13,1,15;MQ=47;PV4=0.6,0.00019,5.5e-07,1 PL:DP:SP:GT:GQ 183,0,255:32:2:0/1:99 +chr11 20098880 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 20099112 . A T 99 . DP=28;AF1=1;CI95=1,1;DP4=0,0,13,6;MQ=43 PL:DP:SP:GT:GQ 255,57,0:19:0:1/1:99 +chr11 20101704 . C T 99 . DP=31;AF1=1;CI95=1,1;DP4=0,0,7,14;MQ=49 PL:DP:SP:GT:GQ 181,63,0:21:0:1/1:99 +chr11 20101744 . C A 33.1 . DP=11;AF1=0.505;CI95=0.5,0.5;DP4=0,1,3,1;MQ=49;PV4=0.4,0.084,0.27,1 PL:DP:SP:GT:GQ 63,0,17:5:0:0/1:20 +chr11 20101830 . T G 8.65 . DP=10;AF1=0.5002;CI95=0.5,0.5;DP4=0,3,0,3;MQ=47;PV4=1,1,0.024,1 PL:DP:SP:GT:GQ 38,0,31:6:0:0/1:33 +chr11 20104669 . G A 77 . DP=46;AF1=0.5;CI95=0.5,0.5;DP4=13,9,15,9;MQ=50;PV4=1,5.6e-31,0.042,0.011 PL:DP:SP:GT:GQ 107,0,255:46:0:0/1:99 +chr11 20105987 . GCCCT G 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 20112649 . G A 99 . DP=13;AF1=1;CI95=1,1;DP4=0,0,0,12;MQ=46 PL:DP:SP:GT:GQ 161,36,0:12:0:1/1:99 +chr11 20119160 . G A 8.64 . DP=53;AF1=0.5;CI95=0.5,0.5;DP4=5,22,8,0;MQ=49;PV4=5.5e-05,1.5e-05,3.3e-07,1 PL:DP:SP:GT:GQ 38,0,255:35:43:0/1:41 +chr11 20124914 . A C 99 . DP=69;AF1=1;CI95=1,1;DP4=1,0,30,24;MQ=49;PV4=1,0.0021,0.36,1 PL:DP:SP:GT:GQ 197,133,0:55:0:1/1:99 +chr11 20127512 . CCCACC CCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 20129075 . G A 61 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=44 PL:DP:SP:GT:GQ 93,9,0:3:0:1/1:63 +chr11 20130578 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 20130852 . C T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 20138587 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 20148609 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 20165244 . TT TTAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 20178717 . G T 28 . DP=6;AF1=0.5001;CI95=0.5,0.5;DP4=0,1,0,4;MQ=49;PV4=1,0.00038,0.19,1 PL:DP:SP:GT:GQ 58,0,35:5:0:0/1:38 +chr11 20208447 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 20248746 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 20264675 . t tGAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 20265189 . TCT TCTCCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 20265576 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 20279267 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 20285893 . C T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 20300649 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 20308309 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 20323854 . A ATTGAGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 20328174 . tcctcc tc 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 20331281 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 20351202 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 20354610 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 20372457 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 20403825 . A T 22 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 54,9,0:3:0:1/1:63 +chr11 20404757 . T C 28 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,5;MQ=48;PV4=1,0.0099,0.013,1 PL:DP:SP:GT:GQ 58,0,138:11:0:0/1:61 +chr11 20413777 . A C 10.4 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=0,1,3,0;MQ=50;PV4=0.25,0.0088,0.33,1 PL:DP:SP:GT:GQ 40,0,36:4:0:0/1:38 +chr11 20419028 . T C 27 . DP=6;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,4,0;MQ=47;PV4=1,0.00035,0.2,0.16 PL:DP:SP:GT:GQ 57,0,35:5:0:0/1:38 +chr11 20419107 . T G 30 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=5,4,6,0;MQ=47;PV4=0.1,0.13,0.073,0.34 PL:DP:SP:GT:GQ 60,0,178:15:10:0/1:63 +chr11 20419110 . A G 61 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=3,4,10,0;MQ=47;PV4=0.015,0.05,0.017,1 PL:DP:SP:GT:GQ 91,0,140:17:18:0/1:94 +chr11 20419130 . G C 41 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=9,2,0,8;MQ=49;PV4=0.00071,3.8e-06,0.0036,0.35 PL:DP:SP:GT:GQ 71,0,255:19:31:0/1:74 +chr11 20423134 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 20443082 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 20487075 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 20497261 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 20515445 . TT TTAT 7.37 . INDEL;DP=3;AF1=0.5025;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,20:2:0:0/1:23 +chr11 20526299 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 20529886 . G A 99 . DP=48;AF1=1;CI95=1,1;DP4=0,1,10,8;MQ=49;PV4=0.47,0.12,0.27,1 PL:DP:SP:GT:GQ 170,31,0:19:0:1/1:99 +chr11 20529923 . G C 4.13 . DP=33;AF1=0.4998;CI95=0.5,0.5;DP4=5,8,5,1;MQ=49;PV4=0.14,0.022,0.0071,0.13 PL:DP:SP:GT:GQ 32,0,239:19:9:0/1:35 +chr11 20536412 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 20564869 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 20574641 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 20621873 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 20623156 . C G 27.5 . DP=20;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=49 PL:DP:SP:GT:GQ 60,12,0:4:0:1/1:72 +chr11 20629164 . G A 82 . DP=43;AF1=0.5;CI95=0.5,0.5;DP4=16,11,3,8;MQ=49;PV4=0.15,1.9e-14,0.0001,0.43 PL:DP:SP:GT:GQ 112,0,255:38:8:0/1:99 +chr11 20636411 . C T 55 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=0,10,0,11;MQ=49;PV4=1,2.3e-08,0.049,1 PL:DP:SP:GT:GQ 85,0,205:21:0:0/1:88 +chr11 20639400 . A G 99 . DP=60;AF1=1;CI95=1,1;DP4=0,1,11,38;MQ=43;PV4=1,1,2.1e-06,1 PL:DP:SP:GT:GQ 255,124,0:50:0:1/1:99 +chr11 20639449 . CTAAG CTAAGTAAG 99 . INDEL;DP=45;AF1=0.5;CI95=0.5,0.5;DP4=5,13,2,14;MQ=50;PV4=0.41,0.00051,0.065,1 PL:DP:SP:GT:GQ 225,0,255:34:4:0/1:99 +chr11 20639465 . A C 28 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=2,17,1,9;MQ=50;PV4=1,1.7e-11,0.073,1 PL:DP:SP:GT:GQ 58,0,255:29:0:0/1:61 +chr11 20640450 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 20660870 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 20676253 . T C 39 . DP=43;AF1=0.5;CI95=0.5,0.5;DP4=11,5,3,3;MQ=49;PV4=0.62,0.00062,4.9e-08,1 PL:DP:SP:GT:GQ 69,0,255:22:2:0/1:72 +chr11 20679820 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 20690017 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 20693678 . AA AACCTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 20735443 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 20757396 . T A 7.81 . DP=2;AF1=0.5025;CI95=0.5,0.5;DP4=1,0,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,20:2:0:0/1:23 +chr11 20795995 . ct cTGAt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 20799069 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 20799080 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 20825321 . t tCGGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 20859500 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 20879075 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 20896496 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 20901087 . T TAGGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 20940736 . A G 3.01 . DP=7;AF1=0.4997;CI95=0.5,0.5;DP4=4,0,2,0;MQ=47;PV4=1,0.2,0.033,1 PL:DP:SP:GT:GQ 30,0,74:6:0:0/1:33 +chr11 20940759 . aca aCAGGCca 5.08 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr11 20959465 . C A 99 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=0,12,0,14;MQ=44;PV4=1,0.29,2.3e-08,1 PL:DP:SP:GT:GQ 184,0,213:26:0:0/1:99 +chr11 20959482 . G C 99 . DP=18;AF1=1;CI95=1,1;DP4=0,0,0,16;MQ=41 PL:DP:SP:GT:GQ 141,48,0:16:0:1/1:99 +chr11 20968852 . C G 6.98 . DP=10;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,3,0;MQ=50;PV4=1,0.021,0,0.12 PL:DP:SP:GT:GQ 36,0,121:7:0:0/1:39 +chr11 20981893 . AT ATGT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 20981894 . T C 8.65 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 20992896 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 21037745 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 21046606 . T TACATGTAC 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 21068713 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 21087786 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 21332352 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 21346318 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 21352363 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 21375872 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 21414938 . TAA TAATAAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 21470102 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 21519110 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 21532974 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 21581665 . C T 58 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=11,0,9,0;MQ=48;PV4=1,2.2e-07,1.3e-08,1 PL:DP:SP:GT:GQ 88,0,216:20:0:0/1:91 +chr11 21585374 . t tGTGTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 21589417 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 21592749 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 21596451 . A ACTGTC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 21602694 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 21613077 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 21638286 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 21652181 . A C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 21668018 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 21674242 . T TCGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 21687716 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 21688712 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 21689473 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 21767318 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 21771628 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 21836178 . ggagagagagagag ggagagagagag 8.19 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 21854346 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 21879369 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 21888512 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 21888936 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 21892901 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 21909014 . aac aACACac 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 21925254 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 21930965 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 21940615 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 21941718 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 21955147 . a aTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 21979647 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 21991915 . gt gTCAt 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 22007547 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 22014970 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 22022526 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 22053136 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 22070980 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 22079662 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 22081709 . a aCT 9.05 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 22093076 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 22126082 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 22192907 . AT ATCTTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 22193702 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 22226876 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 22242729 . T C 86 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,6;MQ=47;PV4=1,0.26,0.0025,1 PL:DP:SP:GT:GQ 116,0,133:12:0:0/1:99 +chr11 22242809 . T G 8.44 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr11 22251461 . T TTTTCCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 22262713 . acac aCACTcac 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 22266251 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 22279650 . A C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 22281959 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 22283631 . A G 8.66 . DP=12;AF1=0.502;CI95=0.5,0.5;DP4=2,0,3,0;MQ=48;PV4=1,1,0.071,0.25 PL:DP:SP:GT:GQ 38,0,21:5:0:0/1:24 +chr11 22294550 . T G 44 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=0,6,1,8;MQ=49;PV4=1,0.031,0.024,0.46 PL:DP:SP:GT:GQ 74,0,78:15:0:0/1:76 +chr11 22297770 . G C 73 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=0,10,0,14;MQ=48;PV4=1,9.5e-09,0.00073,1 PL:DP:SP:GT:GQ 103,0,198:24:0:0/1:99 +chr11 22300408 . t tCTCGTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 22360195 . G GTCGGT 43.5 . INDEL;DP=13;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,2;MQ=50;PV4=1,1,1,0.49 PL:DP:SP:GT:GQ 81,0,41:3:0:0/1:44 +chr11 22364374 . TC TCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 22398255 . C T 57 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=1,8,1,7;MQ=49;PV4=1,1.6e-06,0.0018,1 PL:DP:SP:GT:GQ 87,0,228:17:0:0/1:90 +chr11 22399545 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 22407582 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 22471476 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 22488021 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 22515830 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 22516621 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 22522576 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 22528175 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 22530695 . A T 9.53 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 22563328 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 22565945 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 22568350 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 22568354 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 22600913 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 22621123 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 22696365 . A C 40.3 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=48 PL:DP:SP:GT:GQ 73,15,0:5:0:1/1:75 +chr11 22740084 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 22745072 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 22788740 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 22789166 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 22824556 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 22829106 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 22835559 . T G 3.08 . DP=2;AF1=0.516;CI95=0.5,0.5;DP4=0,1,1,0;MQ=39;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,12:2:0:0/1:15 +chr11 22835571 . T C 6.79 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=39 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr11 22847080 . CTAA C 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 22849486 . T TCCGGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 22867208 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 22872946 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 22875867 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 22902634 . A AGAGAGAAGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 22928602 . t tTTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 22963388 . ctt cTTTGGTGGGtt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 22965614 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 22978567 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 22997643 . tagta t 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 23017577 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 23038208 . T TAATG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 23038782 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 23117438 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 23117447 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 23119561 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 23128492 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 23133917 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 23145332 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 23179528 . C G 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 23191788 . C A 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 23201955 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 23212799 . a aAC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 23213917 . a aCAG 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 23238782 . G T 3.55 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 23242784 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 23265477 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 23269487 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 23292307 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 23312730 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 23352060 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 23381592 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 23422685 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 23426149 . TGC TGCACGC 3.25 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.4 PL:DP:SP:GT:GQ 38,0,78:4:0:0/1:41 +chr11 23426467 . A T 53 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=6,0,8,0;MQ=49;PV4=1,2.7e-10,0.055,1 PL:DP:SP:GT:GQ 83,0,166:14:0:0/1:86 +chr11 23426998 . C G 10.4 . DP=5;AF1=0.5001;CI95=0.5,0.5;DP4=2,0,2,0;MQ=48;PV4=1,1,0.019,0.17 PL:DP:SP:GT:GQ 40,0,32:4:0:0/1:34 +chr11 23427630 . G C 7.8 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=1,3,2,0;MQ=48;PV4=0.4,0.38,0.089,0.45 PL:DP:SP:GT:GQ 37,0,94:6:4:0/1:40 +chr11 23477004 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 23533212 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 23549734 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 23550829 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 23570588 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 23575208 . T TTGAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 23578302 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 23583446 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 23601484 . a aCCGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 23675262 . agact a 11.8 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 23708630 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 23714198 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 23745538 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 23766816 . C G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 23769243 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 23784369 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 23810855 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 23814991 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 23839818 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 23840877 . T TCGTCTGACCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 23927672 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 23931465 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 23936820 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 23952183 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 23953388 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 23974376 . t tTCCAAGGGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 23994009 . GC GCATAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 24009977 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 24016147 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 24063703 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 24064736 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 24073139 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 24081322 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 24091612 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 24103093 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 24132058 . a aACTGATACACT 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=47 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 24133228 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 24133933 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 24141353 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 24175600 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 24183797 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 24184979 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 24189464 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 24214698 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 24220621 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 24255896 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 24294006 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 24300347 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 24332326 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 24339210 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 24441286 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 24506514 . C A 17.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 49,6,0:2:0:1/1:49 +chr11 24521140 . CAG C 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 24548498 . T TCAGGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 24573500 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 24596607 . T G 3.05 . DP=2;AF1=0.5078;CI95=0.5,0.5;DP4=1,0,0,1;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,15:2:0:0/1:18 +chr11 24614778 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 24634069 . AT ATGGGCCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 24726108 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 24740221 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 24740317 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 24759861 . C T,G,A 3.98 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=46 PL:DP:SP:GT:GQ 50,23,32,40,17,0,8,29,19,37:4:0:1/1:49 +chr11 24759866 . T G 12.3 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,3;MQ=48;PV4=1,1,0.045,1 PL:DP:SP:GT:GQ 42,0,48:7:0:0/1:44 +chr11 24773106 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 24835951 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 24936025 . A C 13.9 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=46 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr11 24936027 . A C,G 8.44 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=45 PL:DP:SP:GT:GQ 43,10,38,4,0,38:3:0:1/1:49 +chr11 24956165 . G GACCGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 24998013 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 25004855 . T G 3.01 . DP=17;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,0,4;MQ=46;PV4=0.2,0.0025,0.29,0.26 PL:DP:SP:GT:GQ 30,0,39:5:0:0/1:32 +chr11 25005102 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 25052884 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 25064334 . tt tTTCt 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 25064729 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 25072409 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 25073439 . C CATGTACAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 25098938 . G C 72.8 . DP=53;AF1=1;CI95=0.5,1;DP4=0,1,4,4;MQ=48;PV4=1,0.41,0.26,1 PL:DP:SP:GT:GQ 104,6,0:9:0:1/1:49 +chr11 25100229 . G A 46.3 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=48 PL:DP:SP:GT:GQ 79,15,0:5:0:1/1:75 +chr11 25113973 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 25148842 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 25154717 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 25168558 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 25171256 . A G 4.77 . DP=2;AF1=0.5007;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,25:2:0:0/1:27 +chr11 25206903 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 25234739 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 25243449 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 25260900 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 25291600 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 25347242 . AAT AATTTAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 25381293 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 25396634 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 25396649 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 25425765 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 25444616 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 25458451 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 25497137 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 25499410 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 25515249 . A ACTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 25550444 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 25557563 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 25571700 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 25704986 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 25708434 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 25725974 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 25726395 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 25732761 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 25732768 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 25762304 . tt tTAGCATATACt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 25787431 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 25831105 . G GAATGTTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 25835602 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 25838838 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 25862930 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 25866169 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 25875195 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 25880296 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 25897797 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 25905321 . A ATCTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 25918872 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 25924247 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 25953425 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 25957864 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 26010593 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 26020036 . at aTCACTt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 26044612 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 26060035 . AA AAGA 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 26067594 . C T 67.5 . DP=7;AF1=1;CI95=0.5,1;DP4=1,0,6,0;MQ=47;PV4=1,1,0.15,1 PL:DP:SP:GT:GQ 99,7,0:7:0:1/1:57 +chr11 26141907 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 26175873 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 26200194 . G GATTGTTTGGT 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=48 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr11 26223956 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 26232998 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 26317700 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 26361237 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 26366395 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 26379544 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 26408508 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 26459885 . T G 7.19 . DP=2;AF1=0.5335;CI95=0.5,1;DP4=0,1,1,0;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,9:2:0:0/1:12 +chr11 26467407 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 26467419 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 26484496 . G C 31 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=3,0,2,0;MQ=47;PV4=1,1,0.00029,1 PL:DP:SP:GT:GQ 61,0,79:5:0:0/1:64 +chr11 26489665 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 26518584 . c cGGCTATT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 26547348 . G A 13 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr11 26547353 . T G 14.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:DP:SP:GT:GQ 46,6,0:2:0:1/1:49 +chr11 26547870 . TT TTTTGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 26552702 . T C 99 . DP=12;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=47 PL:DP:SP:GT:GQ 132,24,0:8:0:1/1:96 +chr11 26552864 . A T 6.98 . DP=39;AF1=0.4999;CI95=0.5,0.5;DP4=4,18,7,0;MQ=49;PV4=0.00021,0.0018,0.0018,0.39 PL:DP:SP:GT:GQ 36,0,255:29:37:0/1:39 +chr11 26558903 . A G 5.46 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=4,0,3,0;MQ=50;PV4=1,1,0.047,0.18 PL:DP:SP:GT:GQ 34,0,37:7:0:0/1:35 +chr11 26563464 . A T 38 . DP=14;AF1=0.5013;CI95=0.5,0.5;DP4=2,0,4,0;MQ=47;PV4=1,1,0.29,1 PL:DP:SP:GT:GQ 68,0,23:6:0:0/1:26 +chr11 26563652 . T G 52.3 . DP=28;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=48 PL:DP:SP:GT:GQ 85,15,0:5:0:1/1:75 +chr11 26568966 . A G 99 . DP=69;AF1=1;CI95=1,1;DP4=1,1,32,28;MQ=50;PV4=1,9e-09,0.37,1 PL:DP:SP:GT:GQ 178,123,0:62:0:1/1:99 +chr11 26581361 . T G 8.87 . DP=14;AF1=0.5336;CI95=0.5,1;DP4=0,1,0,3;MQ=50;PV4=1,0.32,0.33,0.013 PL:DP:SP:GT:GQ 38,0,9:4:0:0/1:12 +chr11 26587133 . T C 99 . DP=48;AF1=1;CI95=1,1;DP4=0,1,9,30;MQ=44;PV4=1,1,0.00014,1 PL:DP:SP:GT:GQ 255,79,0:40:0:1/1:99 +chr11 26593984 . C CGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 26619872 . T C 36 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=2,0,4,0;MQ=48;PV4=1,0.032,0.16,0.13 PL:DP:SP:GT:GQ 66,0,57:6:0:0/1:59 +chr11 26646058 . T G,A 6.79 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=44 PL:DP:SP:GT:GQ 48,17,36,11,0,36:3:0:1/1:49 +chr11 26647554 . tg tGACCCAg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 26656714 . C G 29 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,2;MQ=48;PV4=1,1,0,0.17 PL:DP:SP:GT:GQ 59,0,106:7:0:0/1:62 +chr11 26677867 . T C 8.64 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=9,0,3,0;MQ=49;PV4=1,0.0024,3.7e-05,0.092 PL:DP:SP:GT:GQ 38,0,200:12:0:0/1:41 +chr11 26691876 . T TTC 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 26692742 . G A 66 . DP=48;AF1=0.5;CI95=0.5,0.5;DP4=10,23,4,5;MQ=48;PV4=0.45,0.011,1.4e-06,1 PL:DP:SP:GT:GQ 96,0,255:42:3:0/1:99 +chr11 26694979 . A G 81 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=9,9,7,5;MQ=49;PV4=0.72,1.4e-11,0.0079,1 PL:DP:SP:GT:GQ 111,0,255:30:1:0/1:99 +chr11 26702664 . C T 99 . DP=22;AF1=1;CI95=1,1;DP4=0,0,2,16;MQ=49 PL:DP:SP:GT:GQ 154,54,0:18:0:1/1:99 +chr11 26705124 . C G 3.56 . DP=2;AF1=0.503;CI95=0.5,0.5;DP4=0,1,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,19:2:0:0/1:22 +chr11 26707257 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 26725586 . Tt TTGGt 7.37 . INDEL;DP=10;AF1=0.5025;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,20:2:0:0/1:23 +chr11 26728117 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 26786537 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 26800840 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 26800868 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 26825557 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 26861200 . g gCTGAGT 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 26890195 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 26900299 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 26928948 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 26930494 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 26940094 . A C 3.02 . DP=2;AF1=0.5004;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,26:2:0:0/1:28 +chr11 26967639 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 26982765 . aaaca aa 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 26985704 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 27006220 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 27009658 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 27010275 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 27014240 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 27016885 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 27034355 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 27064584 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 27076977 . C T 61.8 . DP=15;AF1=1;CI95=0.5,1;DP4=0,1,8,1;MQ=49;PV4=0.2,0.49,0.38,1 PL:DP:SP:GT:GQ 94,10,0:10:0:1/1:60 +chr11 27077118 . C T 52.2 . DP=42;AF1=0.7303;CI95=0.5,1;DP4=1,0,3,3;MQ=49;PV4=1,0.3,0.3,1 PL:DP:SP:GT:GQ 81,0,2:7:0:0/1:3 +chr11 27081720 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 27084509 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 27149043 . T G 26 . DP=14;AF1=0.6671;CI95=0.5,1;DP4=0,1,0,6;MQ=49;PV4=1,0.34,1,0.41 PL:DP:SP:GT:GQ 55,0,3:7:0:0/1:5 +chr11 27161902 . T G 3.54 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,44:2:0:0/1:34 +chr11 27178826 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 27236744 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 27247452 . CT CTAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 27254481 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 27258676 . t tGCTGATACTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 27354269 . cag cAGag 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 27389582 . C T 12.3 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=12,6,0,7;MQ=48;PV4=0.0052,0.0013,5e-05,0.46 PL:DP:SP:GT:GQ 42,0,255:25:23:0/1:45 +chr11 27390089 . T C 69.1 . DP=40;AF1=0.9966;CI95=0.5,1;DP4=1,0,4,4;MQ=49;PV4=1,0.15,0.27,1 PL:DP:SP:GT:GQ 98,1,0:9:0:1/1:23 +chr11 27398845 . G A 99 . DP=11;AF1=1;CI95=1,1;DP4=0,0,0,10;MQ=46 PL:DP:SP:GT:GQ 148,30,0:10:0:1/1:99 +chr11 27408453 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 27431305 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 27435452 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 27444985 . C CGAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 27448946 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 27470825 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 27487246 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 27499134 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 27510115 . T TAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 27511187 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 27514772 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 27541183 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 27575069 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 27576318 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 27585787 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 27588418 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 27605891 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 27630252 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 27640608 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 27658786 . ga gATa 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 27660255 . gaa gAAAaa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 27668623 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 27679662 . T C 3.02 . DP=55;AF1=0.5013;CI95=0.5,0.5;DP4=0,1,2,0;MQ=49;PV4=0.33,0.19,0.33,1 PL:DP:SP:GT:GQ 30,0,22:3:0:0/1:24 +chr11 27679916 . C T 99 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=7,10,4,11;MQ=49;PV4=0.47,0.00015,0.052,0.08 PL:DP:SP:GT:GQ 134,0,255:32:3:0/1:99 +chr11 27700208 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 27710686 . CC CCCCCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 27715215 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 27739924 . TT TTAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 27783634 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 27799583 . TC TCCCCTGACGC 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=47 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 27801007 . t tCA 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 27801376 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 27804265 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 27848997 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 27870455 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 27879383 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 27893149 . ctggagtt c 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 27893925 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 27912286 . TC TCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 27953155 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 27987608 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 27993250 . CA CATGCTGACTGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 28020272 . T A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 28030529 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 28037883 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 28045807 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 28057957 . T C 99 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=6,9,4,11;MQ=48;PV4=0.7,4.9e-09,5.5e-05,1 PL:DP:SP:GT:GQ 184,0,255:30:2:0/1:99 +chr11 28077061 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 28113133 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 28123744 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 28156486 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 28172043 . A AACCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 28177135 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 28178836 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 28206387 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 28216177 . A AGG 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 28233369 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 28266048 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 28269624 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 28311682 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 28318343 . G T 4.79 . DP=2;AF1=0.5039;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,18:2:0:0/1:21 +chr11 28346632 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 28362697 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 28374233 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 28380313 . t tGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 28381585 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 28429976 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 28434533 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 28458502 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 28508617 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 28534012 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 28562214 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 28562465 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 28585232 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 28643618 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 28644839 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 28652870 . g gAGGAACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 28684569 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 28694395 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 28722035 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 28732254 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 28734677 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 28750168 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 28751780 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 28762991 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 28776397 . actc aCTCTTCTctc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 28794877 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 28818472 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 28873697 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 28884571 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 28942415 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 28959503 . a aTGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 29059412 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 29062772 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 29076196 . ag aGGGTTTg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 29089335 . taac t 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 29103419 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 29123050 . AGGCCTGT A 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 29129039 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 29161344 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 29181496 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 29182333 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 29276322 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 29283368 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 29291925 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 29295733 . ga gATCCTTTAa 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 29308255 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 29350552 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 29356667 . C A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 29417966 . g gGGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 29436233 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 29463381 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 29473444 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 29531149 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 29544975 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 29552801 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 29567588 . G T 22 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 54,9,0:3:0:1/1:63 +chr11 29597913 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 29613587 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 29615801 . A C 8.65 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 29647032 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 29651878 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 29654544 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 29678407 . GCCAC GC 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 29736154 . AA AATTACA 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 29789776 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 29801453 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 29803247 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 29807469 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 29829282 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 29832092 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 29887490 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 29895137 . CA CATAGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 29898114 . aa aACCa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 29902573 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 29918813 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 29920493 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 29937291 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 29944692 . ct cTTGt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 29954805 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 29965934 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 29968353 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 29998224 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 30006216 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 30019953 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 30057828 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 30065191 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 30071565 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 30101324 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 30122547 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 30159975 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 30159991 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 30170719 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 30188926 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 30218930 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 30240868 . T TCGGAGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 30255185 . C T 99 . DP=48;AF1=0.5;CI95=0.5,0.5;DP4=13,11,11,9;MQ=49;PV4=1,9e-06,0.00049,1 PL:DP:SP:GT:GQ 217,0,255:44:0:0/1:99 +chr11 30274309 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 30277295 . G T 7.02 . DP=2;AF1=0.5063;CI95=0.5,0.5;DP4=0,1,1,0;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,16:2:0:0/1:19 +chr11 30277410 . a aTC 9.94 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 30302993 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 30317185 . cc cCTTc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 30333942 . t tGCGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 30337797 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 30352473 . CGG CAGGG 64.7 . INDEL;DP=9;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=49 PL:DP:SP:GT:GQ 105,15,0:5:0:1/1:75 +chr11 30358157 . C A 7.8 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 30358351 . A ATATTT 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,99:4:0:0/1:41 +chr11 30369794 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 30384880 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 30390265 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 30400746 . G GCAC 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 30403519 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 30405794 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 30425899 . A ACCAGCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 30427164 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 30441783 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 30457517 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 30476963 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 30549404 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 30557727 . AG AGATCGG 7.37 . INDEL;DP=8;AF1=0.5025;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,20:2:0:0/1:23 +chr11 30565559 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 30574338 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 30575753 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 30576672 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 30594407 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 30654225 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 30670098 . a aTTAGAAGCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 30688722 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 30745428 . g gCAACATAA 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 30745484 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 30761369 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 30762533 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 30780280 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 30780871 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 30806392 . CT CTTTAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 30848706 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 30853187 . a aCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 30863600 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 30928412 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 30930492 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 30964685 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 31008548 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 31019517 . A C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 31033628 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 31060004 . GCC GCCCATTAACC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 31075767 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 31091188 . T TGGCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 31103517 . A AAGCCAGGGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 31115533 . A ACTG 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 31182980 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 31189144 . T TCCTTAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 31217600 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 31224997 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 31249193 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 31282385 . CT CTCTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 31286221 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 31302551 . C A 36 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,3;MQ=48;PV4=1,0.023,0.048,1 PL:DP:SP:GT:GQ 66,0,135:7:0:0/1:69 +chr11 31312450 . ATG ATGTGCTGTG 3.25 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.26 PL:DP:SP:GT:GQ 38,0,68:4:0:0/1:41 +chr11 31332532 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 31344505 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 31361886 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 31364294 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 31375063 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 31377076 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 31384420 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 31392326 . G T 4.77 . DP=25;AF1=0.4999;CI95=0.5,0.5;DP4=0,14,5,0;MQ=49;PV4=8.6e-05,2e-05,0.007,0.49 PL:DP:SP:GT:GQ 33,0,227:19:41:0/1:36 +chr11 31446526 . t tCTGTCTTA 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 31532119 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 31560272 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 31606855 . AA AAGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 31616496 . T C 14.3 . DP=4;AF1=0.5128;CI95=0.5,0.5;DP4=0,1,0,3;MQ=49;PV4=1,0.16,0.24,0.18 PL:DP:SP:GT:GQ 44,0,13:4:0:0/1:16 +chr11 31621557 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 31634179 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 31637136 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 31652158 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 31653956 . C A 66.5 . DP=31;AF1=0.8277;CI95=0.5,1;DP4=1,1,1,7;MQ=49;PV4=0.38,1,0.12,1 PL:DP:SP:GT:GQ 95,0,1:10:4:1/1:5 +chr11 31693486 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 31709737 . A ATG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 31735274 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 31763739 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 31778273 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 31792356 . C T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 31823301 . T C 13.2 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=10,3,0,8;MQ=49;PV4=0.001,0.00027,0.0061,0.33 PL:DP:SP:GT:GQ 43,0,255:21:30:0/1:46 +chr11 31830095 . GA GATGTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 31857265 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 31860660 . A C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 31863378 . A AAT 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 31872731 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 31877570 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 31892943 . T G 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 31903485 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 31903840 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 31917653 . CAAA CAAAAA 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 31998757 . A C 14.9 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=43 PL:DP:SP:GT:GQ 46,6,0:2:0:1/1:49 +chr11 32006692 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 32035390 . C CGGGGATTTCT 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=48 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 32101109 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 32118925 . A G 58.3 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=46 PL:DP:SP:GT:GQ 91,15,0:5:0:1/1:75 +chr11 32125855 . A G 4.61 . DP=16;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 32127796 . gg gGACCGTAg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 32138028 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 32173604 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 32195966 . A C 3.54 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,34:2:0:0/1:32 +chr11 32199845 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 32207989 . tagc t 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 32216746 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 32237644 . gc gCGTc 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 32240520 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 32265025 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 32301409 . G GAAC 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 32309004 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 32318493 . A ACTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 32334881 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 32346738 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 32391939 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 32405216 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 32410774 . A G 99 . DP=42;AF1=1;CI95=1,1;DP4=0,1,0,32;MQ=48;PV4=1,0.44,0.21,1 PL:DP:SP:GT:GQ 167,73,0:33:0:1/1:99 +chr11 32417945 . T C 17.6 . DP=30;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=50 PL:DP:SP:GT:GQ 50,12,0:4:0:1/1:72 +chr11 32421238 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 32423931 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 32444653 . TA TACGGAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 32460575 . T C 55 . DP=39;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=49 PL:DP:SP:GT:GQ 88,24,0:8:0:1/1:96 +chr11 32480747 . T TTGGACGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 32507980 . gt gTACCTt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 32580507 . G A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 32596128 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 32613307 . A C 4.13 . DP=14;AF1=0.5003;CI95=0.5,0.5;DP4=1,0,2,0;MQ=49;PV4=1,0.077,0.33,0.48 PL:DP:SP:GT:GQ 32,0,27:3:0:0/1:29 +chr11 32617537 . A T 19.1 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=2,9,7,0;MQ=49;PV4=0.0023,0.0057,0.00015,1 PL:DP:SP:GT:GQ 49,0,220:18:26:0/1:52 +chr11 32623264 . G C 29 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=48 PL:DP:SP:GT:GQ 61,9,0:3:0:1/1:63 +chr11 32623392 . C A 10.1 . DP=11;AF1=0.5939;CI95=0.5,1;DP4=0,1,0,4;MQ=48;PV4=1,1,0.16,0.18 PL:DP:SP:GT:GQ 39,0,5:5:0:0/1:7 +chr11 32637534 . TT TTAAGAAT 5.08 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,1;MQ=50;PV4=1,1,1,0.26 PL:DP:SP:GT:GQ 41,0,66:3:0:0/1:44 +chr11 32690735 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 32697415 . A T 41.5 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=48 PL:DP:SP:GT:GQ 74,12,0:4:0:1/1:72 +chr11 32725373 . G C 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 32737084 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 32765111 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 32797665 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 32860135 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 32874926 . G A 66 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=5,1,15,1;MQ=49;PV4=0.48,2.4e-16,0.00054,1 PL:DP:SP:GT:GQ 96,0,172:22:3:0/1:99 +chr11 32876117 . a aTCGAGAGCG 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 32882542 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 32896345 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 32938303 . a aACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 32949711 . CT CACTCGAAGCTAT 5.08 . INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,48:3:0:0/1:43 +chr11 32949712 . TGA TGAGA 5.08 . INDEL;DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.33 PL:DP:SP:GT:GQ 41,0,62:3:0:0/1:44 +chr11 32954344 . G A 99 . DP=40;AF1=1;CI95=1,1;DP4=0,1,10,22;MQ=49;PV4=1,0.016,0.29,1 PL:DP:SP:GT:GQ 208,69,0:33:0:1/1:99 +chr11 32956244 . A G 25.5 . DP=48;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=50 PL:DP:SP:GT:GQ 58,12,0:4:0:1/1:72 +chr11 33011950 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 33022591 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 33046340 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 33053107 . C T 99 . DP=52;AF1=0.5;CI95=0.5,0.5;DP4=6,24,4,17;MQ=48;PV4=1,2e-06,4.7e-16,1 PL:DP:SP:GT:GQ 221,0,255:51:0:0/1:99 +chr11 33054794 . T G 4.77 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=1,0,2,0;MQ=49;PV4=1,0.087,0.33,1 PL:DP:SP:GT:GQ 33,0,35:3:0:0/1:34 +chr11 33065547 . G A 20.1 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,3;MQ=48;PV4=1,0.032,0.21,0.44 PL:DP:SP:GT:GQ 50,0,38:4:0:0/1:41 +chr11 33076191 . T C 99 . DP=56;AF1=1;CI95=1,1;DP4=0,1,24,26;MQ=49;PV4=1,1,0.29,1 PL:DP:SP:GT:GQ 255,136,0:51:0:1/1:99 +chr11 33090071 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 33091162 . a aAGTCTCCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 33113912 . T G 7.01 . DP=5;AF1=0.505;CI95=0.5,0.5;DP4=0,1,0,2;MQ=42;PV4=1,0.38,0.13,1 PL:DP:SP:GT:GQ 36,0,17:3:0:0/1:20 +chr11 33120514 . AG AGCGATGG 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,40:3:0:0/1:40 +chr11 33127651 . tt tTGt 5.09 . INDEL;DP=3;AF1=0.5012;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.17 PL:DP:SP:GT:GQ 41,0,23:3:0:0/1:26 +chr11 33131862 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 33137264 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 33137812 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 33147898 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 33158355 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 33180533 . taaaaaaaaaa tAAAAaaaaaaaaaa 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 33181305 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 33248940 . c cCGTCGCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 33279426 . CT CTAGAGTT 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 33360886 . ATTTT ATTT 99 . INDEL;DP=38;AF1=1;CI95=1,1;DP4=1,0,25,7;MQ=50;PV4=1,0.14,1,1 PL:DP:SP:GT:GQ 202,74,0:33:0:1/1:99 +chr11 33363286 . A T 15.1 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 47,9,0:3:0:1/1:63 +chr11 33385731 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 33409710 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 33424367 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 33466974 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 33477732 . A AGT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 33540956 . ACCAAT A 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 33582653 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 33590827 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 33592990 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 33627646 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 33639772 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 33655933 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 33697030 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 33706728 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 33707952 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 33710684 . g gGCGTAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 33720208 . GAAAAC G 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 33729569 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 33758289 . TTTTTTTAAGT TT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 33763459 . A T 3.01 . DP=15;AF1=0.4998;CI95=0.5,0.5;DP4=2,2,0,2;MQ=49;PV4=0.47,1,0.00092,1 PL:DP:SP:GT:GQ 30,0,61:6:3:0/1:33 +chr11 33768917 . T A 7.02 . DP=15;AF1=0.5063;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.33,0.11,1 PL:DP:SP:GT:GQ 36,0,16:3:0:0/1:19 +chr11 33775365 . GCAA G 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 33779791 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 33781062 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 33790382 . C A 4.77 . DP=9;AF1=0.4999;CI95=0.5,0.5;DP4=1,2,1,1;MQ=48;PV4=1,0.022,0.086,1 PL:DP:SP:GT:GQ 33,0,83:5:0:0/1:36 +chr11 33805980 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 33809233 . AA AAGA 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,43:2:0:0/1:43 +chr11 33814401 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 33824152 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 33837577 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 33874938 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 33881016 . T C 11.1 . DP=57;AF1=0.6243;CI95=0.5,1;DP4=0,1,2,1;MQ=49;PV4=1,1,0.21,1 PL:DP:SP:GT:GQ 40,0,4:4:0:0/1:6 +chr11 33882427 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 33910095 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 33974492 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 33976083 . C T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 33980239 . gg gGAAAATg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 33981377 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 33985853 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 33988760 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 33996399 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 34020017 . ca cAGTAAa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 34029005 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 34067924 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 34080106 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 34107785 . G A 47.5 . DP=15;AF1=0.8277;CI95=0.5,1;DP4=1,0,1,4;MQ=49;PV4=0.33,1,0.25,1 PL:DP:SP:GT:GQ 76,0,1:6:0:1/1:5 +chr11 34112132 . G A 8.64 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=0,18,4,0;MQ=49;PV4=0.00014,5.8e-09,6e-09,1 PL:DP:SP:GT:GQ 38,0,237:22:39:0/1:41 +chr11 34113717 . C T 99 . DP=8;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=44 PL:DP:SP:GT:GQ 157,21,0:7:0:1/1:84 +chr11 34120979 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 34134217 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 34134219 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 34152396 . A G 25 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=19,1,0,10;MQ=49;PV4=3.7e-07,1.7e-10,0.00019,0.017 PL:DP:SP:GT:GQ 55,0,255:30:64:0/1:58 +chr11 34152939 . T C 99 . DP=32;AF1=1;CI95=1,1;DP4=0,0,8,14;MQ=47 PL:DP:SP:GT:GQ 255,66,0:22:0:1/1:99 +chr11 34153156 . T C 17.8 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:DP:SP:GT:GQ 49,6,0:2:0:1/1:49 +chr11 34154641 . C T 28 . DP=58;AF1=0.5;CI95=0.5,0.5;DP4=1,2,3,2;MQ=49;PV4=1,0.18,0.11,1 PL:DP:SP:GT:GQ 58,0,61:8:0:0/1:59 +chr11 34158411 . A G 99 . DP=17;AF1=1;CI95=1,1;DP4=1,0,1,12;MQ=47;PV4=0.14,1,0.3,0.21 PL:DP:SP:GT:GQ 159,24,0:14:0:1/1:96 +chr11 34158431 . T C 63.3 . DP=17;AF1=1;CI95=0.5,1;DP4=0,0,1,4;MQ=43 PL:DP:SP:GT:GQ 96,15,0:5:0:1/1:75 +chr11 34160693 . A C 12 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr11 34173781 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 34176214 . A G 71.1 . DP=13;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=45 PL:DP:SP:GT:GQ 104,21,0:7:0:1/1:84 +chr11 34189577 . A AGTTCC 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,0.47,1,1 PL:DP:SP:GT:GQ 38,0,52:3:0:0/1:41 +chr11 34201285 . C A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 34201799 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 34214104 . A AAGGGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 34219090 . T C 5.51 . DP=2;AF1=0.5079;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,15:2:0:0/1:18 +chr11 34230807 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 34244065 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 34244533 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 34249235 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 34251812 . AGGG AGGGTTTTGTGGG 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=47 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 34281762 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 34326287 . T G 6.79 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=49 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr11 34356694 . G A 6.2 . DP=4;AF1=0.5005;CI95=0.5,0.5;DP4=1,0,1,1;MQ=49;PV4=1,0,0,1 PL:DP:SP:GT:GQ 35,0,26:3:0:0/1:28 +chr11 34357080 . G A 29 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=11,1,7,0;MQ=49;PV4=1,0.00011,0.028,1 PL:DP:SP:GT:GQ 59,0,250:19:0:0/1:62 +chr11 34357317 . CCT CCTCT 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,1,1,0;MQ=50;PV4=1,1,1,0.03 PL:DP:SP:GT:GQ 38,0,91:4:0:0/1:41 +chr11 34371269 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 34385747 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 34410929 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 34422183 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 34475570 . T C 6.2 . DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,2;MQ=48;PV4=1,0.34,0.099,1 PL:DP:SP:GT:GQ 35,0,50:4:0:0/1:38 +chr11 34480511 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 34482908 . C T 99 . DP=38;AF1=1;CI95=1,1;DP4=0,1,3,20;MQ=43;PV4=1,0.055,0.0013,1 PL:DP:SP:GT:GQ 255,22,0:24:0:1/1:88 +chr11 34484806 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 34495156 . tt tTACGTCt 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 34521559 . c cAGTTGTGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 34558715 . a aAAT 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 34567507 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 34621562 . G GAC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 34621828 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 34622365 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 34653509 . C CCGGTAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 34668143 . C T 97.1 . DP=44;AF1=1;CI95=1,1;DP4=0,0,3,4;MQ=48 PL:DP:SP:GT:GQ 130,21,0:7:0:1/1:84 +chr11 34675705 . A C 4.13 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,1,0;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,38:2:0:0/1:34 +chr11 34689511 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 34698345 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 34723915 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 34729057 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 34774483 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 34848181 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 34857668 . A C 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 34866182 . CAGAG CAG 5.08 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 34885256 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 34885271 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 34907984 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 34909789 . GA GACA 5.08 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.11 PL:DP:SP:GT:GQ 41,0,63:3:0:0/1:44 +chr11 34910347 . T C 3.54 . DP=9;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,0,2;MQ=48;PV4=0.33,0,0.26,1 PL:DP:SP:GT:GQ 31,0,39:3:0:0/1:33 +chr11 34910397 . C T 19.1 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=2,1,1,1;MQ=48;PV4=1,1,0.008,1 PL:DP:SP:GT:GQ 49,0,67:5:0:0/1:52 +chr11 34916710 . A G 20 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,3;MQ=48;PV4=1,0.0011,0.15,1 PL:DP:SP:GT:GQ 50,0,77:5:0:0/1:53 +chr11 34938199 . C G 33 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=1,1,4,0;MQ=46;PV4=0.33,0.18,1,0.2 PL:DP:SP:GT:GQ 63,0,46:6:0:0/1:49 +chr11 34938265 . C T 22.6 . DP=12;AF1=0.9998;CI95=0.5,1;DP4=0,1,0,4;MQ=48;PV4=1,1,0.21,1 PL:DP:SP:GT:GQ 52,2,0:5:0:1/1:37 +chr11 34940167 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 34957651 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 34968952 . C T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 34969022 . a aTAT 12.7 . INDEL;DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 34978876 . CTTAAT CT 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 34984413 . ATG ATGGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 34988343 . T C 8.64 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,4;MQ=50;PV4=1,0.0059,0.15,1 PL:DP:SP:GT:GQ 38,0,138:9:0:0/1:41 +chr11 34997435 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 34999745 . C G 99 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=1,6,0,20;MQ=45;PV4=0.26,0.5,3e-08,1 PL:DP:SP:GT:GQ 196,0,160:27:0:0/1:99 +chr11 35013007 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 35063534 . G GGAAAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 35068916 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 35093974 . g gTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 35094519 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 35104949 . T A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 35122822 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 35134386 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 35143716 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 35144736 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 35171272 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 35179241 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 35179245 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 35199608 . AAGCT A 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 35223158 . T C 99 . DP=22;AF1=1;CI95=1,1;DP4=0,0,18,1;MQ=47 PL:DP:SP:GT:GQ 197,57,0:19:0:1/1:99 +chr11 35228076 . T TTAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 35228265 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 35229673 . T C 99 . DP=50;AF1=1;CI95=1,1;DP4=1,1,40,4;MQ=49;PV4=0.21,0.0045,0.29,1 PL:DP:SP:GT:GQ 143,81,0:46:7:1/1:99 +chr11 35238223 . C T 3.03 . DP=2;AF1=0.5029;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,19:2:0:0/1:22 +chr11 35299504 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 35306992 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 35318849 . c cGTGGTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 35322937 . CAAAGT C 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 35323069 . A G 44 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=0,12,9,0;MQ=49;PV4=3.4e-06,0.0055,0.18,1 PL:DP:SP:GT:GQ 74,0,188:21:55:0/1:77 +chr11 35333722 . A T 64 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=7,3,12,0;MQ=49;PV4=0.078,1.9e-06,0.12,1 PL:DP:SP:GT:GQ 94,0,255:22:11:0/1:97 +chr11 35342302 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 35344597 . T A 4.13 . DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 35358725 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 35375833 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 35385550 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 35398966 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 35430232 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 35432234 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 35436461 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 35437338 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 35445422 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 35453796 . GCCC GCC 36.4 . INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 76,9,0:3:0:1/1:63 +chr11 35463144 . T A 34.1 . DP=17;AF1=0.9966;CI95=0.5,1;DP4=1,0,0,4;MQ=48;PV4=0.2,1,0.16,1 PL:DP:SP:GT:GQ 63,1,0:5:0:1/1:23 +chr11 35471477 . gt gTGACCt 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 35477440 . AA AAGGACTGTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 35499276 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 35514498 . c cAGGGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 35535589 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 35538629 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 35602173 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 35638542 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 35667195 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 35673135 . GCC GCCTCC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 35681265 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 35685046 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 35685913 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 35710124 . T TCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 35743844 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 35750399 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 35766286 . ac aCTGCTCTCCTc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 35772393 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 35773785 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 35852373 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 35853102 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 35859466 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 35863139 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 35866463 . A AACCTGGAACAGAGT 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 35874622 . C CAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 35876164 . t tCAATCTAAA 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 35882333 . G GATA 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 35886641 . C CGAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 35891379 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 35902231 . tct tCTATCCCCCct 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 35933673 . CCAG CCAGATCAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 35934553 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 35951276 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 35956312 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 35988735 . C G 17.8 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=44 PL:DP:SP:GT:GQ 49,6,0:2:0:1/1:49 +chr11 36001569 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 36005980 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 36019129 . GG GGTG 5.08 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.099 PL:DP:SP:GT:GQ 41,0,57:3:0:0/1:44 +chr11 36052038 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 36054918 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 36054922 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 36057626 . G A 99 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=5,0,19,0;MQ=44;PV4=1,0.17,2.6e-09,1 PL:DP:SP:GT:GQ 194,0,96:24:0:0/1:99 +chr11 36068681 . t tAAGTACTA 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 36082574 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 36089462 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 36103442 . C G 25 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,4;MQ=49;PV4=1,0.0024,0.11,1 PL:DP:SP:GT:GQ 55,0,149:9:0:0/1:58 +chr11 36111766 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 36126586 . AAG AAGGAG 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 36139587 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 36143908 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 36161480 . T C 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 36170519 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 36177332 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 36182732 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 36186336 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 36188160 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 36199824 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 36208585 . GC GCTC 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 36293376 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 36298790 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 36319001 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 36353311 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 36355625 . G T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 36377938 . c cT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 36388510 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 36422009 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 36422792 . G A 33 . DP=13;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=48 PL:DP:SP:GT:GQ 65,9,0:3:0:1/1:63 +chr11 36426648 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 36430442 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 36453506 . T C 4.13 . DP=27;AF1=0.4998;CI95=0.5,0.5;DP4=0,17,0,5;MQ=49;PV4=1,1.9e-06,0.00023,0.27 PL:DP:SP:GT:GQ 32,0,235:22:0:0/1:35 +chr11 36456774 . T TGCTCACTG 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 36461501 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 36486677 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 36519286 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 36523001 . G T 11.3 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,3;MQ=48;PV4=1,0.17,1,1 PL:DP:SP:GT:GQ 41,0,36:6:0:0/1:38 +chr11 36535278 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 36553439 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 36565065 . G GAGCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 36581698 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 36581714 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 36582338 . c cGTATG 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 36588090 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 36590712 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 36594945 . A C 3.01 . DP=20;AF1=0.4997;CI95=0.5,0.5;DP4=2,5,0,3;MQ=48;PV4=1,0.071,0.28,0.22 PL:DP:SP:GT:GQ 30,0,175:10:0:0/1:33 +chr11 36595277 . A T 9.52 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=12,7,0,6;MQ=49;PV4=0.015,0.029,0.00033,1 PL:DP:SP:GT:GQ 39,0,255:25:18:0/1:42 +chr11 36595600 . A G 99 . DP=34;AF1=1;CI95=1,1;DP4=1,0,15,11;MQ=49;PV4=1,1,0.39,1 PL:DP:SP:GT:GQ 176,65,0:27:0:1/1:99 +chr11 36596023 . A C 23 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=2,6,3,2;MQ=48;PV4=0.29,0.048,0.014,1 PL:DP:SP:GT:GQ 53,0,139:13:5:0/1:56 +chr11 36602488 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 36605779 . C CT 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 36614049 . AA AACGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 36641638 . GC GCAGACTCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 36641890 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 36669778 . C T 99 . DP=21;AF1=1;CI95=1,1;DP4=0,0,0,14;MQ=47 PL:DP:SP:GT:GQ 161,42,0:14:0:1/1:99 +chr11 36679458 . T A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 36695205 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 36699481 . T A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 36708174 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 36729795 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 36744884 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 36847328 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 36939130 . gtaata gta 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 36939752 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 36942974 . g gAGAAAGACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 36992725 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 37013012 . G GGTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 37039244 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 37058008 . AACA AACACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 37087803 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 37138535 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 37164206 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 37283598 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 37305420 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 37314702 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 37385310 . ggagctt g 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 37403880 . A AAGGGGTTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 37407226 . A T 9.31 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr11 37460942 . A T 13.2 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=50 PL:DP:SP:GT:GQ 45,9,0:3:0:1/1:63 +chr11 37481558 . Ga GACa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 37506223 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 37511693 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 37537011 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 37564379 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 37566336 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 37574388 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 37579710 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 37602220 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 37643679 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 37691508 . T A 6.98 . DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,1,1,1;MQ=40;PV4=1,0,1,1 PL:DP:SP:GT:GQ 36,3,0:3:0:1/1:41 +chr11 37731862 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 37740372 . ggt gGTgt 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 37809774 . T TCTCCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 37823489 . g gTAA 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 37833115 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 37908531 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 37916370 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 37966487 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 37967509 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 38028488 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 38090699 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 38096873 . G A 14.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 38115768 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 38179855 . A T 3.55 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 38203525 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 38219981 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 38246081 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 38246951 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 38273512 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 38278079 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 38278366 . GAT GAGTAT 6.56 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 38279570 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 38309702 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 38309714 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 38331053 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 38364432 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 38377454 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 38388537 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 38390163 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 38398123 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 38434803 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 38435604 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 38458179 . GA GAAAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 38460770 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 38469564 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 38469977 . G A 59.6 . DP=12;AF1=0.5939;CI95=0.5,1;DP4=1,0,8,0;MQ=48;PV4=1,0.088,0.2,1 PL:DP:SP:GT:GQ 89,0,5:9:0:0/1:7 +chr11 38477046 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 38499681 . t tGTGTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 38500860 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 38554358 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 38599186 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 38632881 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 38639936 . c cCCAGTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 38696269 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 38734907 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 38878133 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 38880745 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 38897677 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 38899188 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 38913320 . A T 14.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=48 PL:DP:SP:GT:GQ 46,6,0:2:0:1/1:49 +chr11 38962962 . T TGACTGGCGTCCCTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 38976749 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 38991580 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 39018686 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 39077171 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 39079708 . C T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 39103026 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 39154389 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 39189582 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 39197755 . c cACAACCTA 8 . INDEL;DP=3;AF1=0.6243;CI95=0.5,1;DP4=0,1,1,0;MQ=36;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,4:2:0:0/1:6 +chr11 39222291 . TT TTCTCCAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 39252262 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 39272246 . cac cACAAac 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 39356385 . at aTCTGCTGt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 39371163 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 39371173 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 39397430 . T TACATCGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 39402641 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 39407476 . TT TTTGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 39460199 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 39511890 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 39513706 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 39527509 . C T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 39573078 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 39573251 . TG TGGAAGTGTAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 39575073 . a aCTTTAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 39579168 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 39579174 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 39586031 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 39609323 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 39617536 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 39648646 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 39681596 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 39683803 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 39734779 . A ACTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 39742752 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 39743240 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 39762852 . ca cAGTCCGTGa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 39796334 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 39798428 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 39896769 . C T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 39930981 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 39963209 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 39967331 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 39969511 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 39971551 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 39995887 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 40020836 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 40041506 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 40095732 . ATG ATGTTCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 40105471 . T C 4.77 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,1;MQ=47;PV4=1,1,0,0.36 PL:DP:SP:GT:GQ 33,0,46:3:0:0/1:36 +chr11 40106099 . G A 7.82 . DP=3;AF1=0.5031;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.33,0.26,0.42 PL:DP:SP:GT:GQ 37,0,19:3:0:0/1:22 +chr11 40141411 . C A 4.77 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,44:2:0:0/1:36 +chr11 40153106 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 40234372 . C A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 40258983 . G C 5.46 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,36:2:0:0/1:35 +chr11 40265874 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 40269627 . T TTCACTCCGCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 40302270 . T A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 40314056 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 40321990 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 40380830 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 40431923 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 40459871 . a aGGTCTTCAGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 40477890 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 40479826 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 40500884 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 40506807 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 40584125 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 40586724 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 40602498 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 40615412 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 40641220 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 40722735 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 40726202 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 40731818 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 40741714 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 40752561 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 40775075 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 40824001 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 40847164 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 40896503 . G C 3.6 . DP=2;AF1=0.5127;CI95=0.5,0.5;DP4=1,0,1,0;MQ=43;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,13:2:0:0/1:16 +chr11 40911137 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 40954168 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 40963498 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 40963506 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 40979024 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 40992646 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 41039947 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 41045465 . TTC TTCCCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 41066382 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 41088231 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 41122445 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 41143165 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 41154177 . TT TTCACAGAAGT 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 41220801 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 41226504 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 41274971 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 41341906 . G GTTC 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 41351626 . a aGAG 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr11 41355680 . AGCCTC A 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 41369943 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 41383658 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 41425296 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 41426239 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 41435960 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 41522488 . T TAAG 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 41558243 . TC TCGGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 41561364 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 41615136 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 41619782 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 41693425 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 41727668 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 41787169 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 41787176 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 41794573 . ca cATAa 7.35 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 41842069 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 41860291 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 41864078 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 41875474 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 41889106 . GT GTTT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 41938805 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 41968254 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 41975299 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 42019759 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 42049835 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 42065103 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 42076260 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 42098613 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 42102838 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 42185040 . gt gTAAt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 42208546 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 42219894 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 42221898 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 42254764 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 42262202 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 42271905 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 42335834 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 42362316 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 42370178 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 42413993 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 42414004 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 42418321 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 42429977 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 42436872 . caca cACAAaca 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 42439778 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 42459776 . g gAGGAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 42506955 . AAA AAACAA 10.8 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr11 42557731 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 42558859 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 42664061 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 42697542 . T TGGTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 42721078 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 42723913 . c cCAACGA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 42780327 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 42794932 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 42803364 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 42805784 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 42845296 . G GCCAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 42846261 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 42865385 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 42877353 . at aTCCt 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 42883437 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 42908573 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 42920949 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 42924116 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 42993228 . T C 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 43012528 . T TTTTCGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 43027740 . g gGGT 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 43052337 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 43077579 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 43102371 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 43115807 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 43128319 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 43153317 . A AAGTGTTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 43155474 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 43155495 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 43205774 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 43288753 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 43305249 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 43340439 . A T 6.2 . DP=5;AF1=0.5001;CI95=0.5,0.5;DP4=0,2,0,2;MQ=48;PV4=1,1,0.029,1 PL:DP:SP:GT:GQ 35,0,32:4:0:0/1:33 +chr11 43345026 . T C 3.01 . DP=11;AF1=0.4997;CI95=0.5,0.5;DP4=4,2,1,1;MQ=49;PV4=1,0.34,0.032,1 PL:DP:SP:GT:GQ 30,0,134:8:0:0/1:33 +chr11 43348050 . CTT CT 23.5 . INDEL;DP=23;AF1=0.5;CI95=0.5,0.5;DP4=2,0,3,0;MQ=50;PV4=1,1,1,0.021 PL:DP:SP:GT:GQ 61,0,37:5:0:0/1:40 +chr11 43348052 . T A 32 . DP=23;AF1=0.5032;CI95=0.5,0.5;DP4=2,0,5,0;MQ=46;PV4=1,1,0.27,0.43 PL:DP:SP:GT:GQ 62,0,19:7:0:0/1:22 +chr11 43374303 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 43380603 . A G 4.77 . DP=3;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,30:2:0:0/1:31 +chr11 43385228 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 43415981 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 43416368 . ctg cTGTGGTtg 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 43427754 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 43429116 . A G 11.3 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,2;MQ=47;PV4=0.33,0,0,0.11 PL:DP:SP:GT:GQ 41,0,37:3:0:0/1:39 +chr11 43450639 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 43455714 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 43459516 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 43460242 . A ATG 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 43472895 . G C 90.1 . DP=8;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=46 PL:DP:SP:GT:GQ 123,21,0:7:0:1/1:84 +chr11 43486772 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 43563267 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 43576376 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 43579881 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 43609366 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 43681192 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 43682308 . aaa aAAGGGAAGaa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 43740038 . G C 3.02 . DP=2;AF1=0.5017;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,21:2:0:0/1:23 +chr11 43772549 . A G 3.54 . DP=5;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,2;MQ=49;PV4=1,0.056,0.33,1 PL:DP:SP:GT:GQ 31,0,37:3:0:0/1:33 +chr11 43856016 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 43876435 . A G 71 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=1,11,1,10;MQ=49;PV4=1,7.9e-10,0.068,1 PL:DP:SP:GT:GQ 101,0,255:23:0:0/1:99 +chr11 43888186 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 43893603 . TAGGAGAGCA TAGGAGAGCAGGAGAGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 43905440 . C G 99 . DP=12;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=43 PL:DP:SP:GT:GQ 191,27,0:9:0:1/1:99 +chr11 43911599 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 43919270 . C T 6.98 . DP=8;AF1=0.4999;CI95=0.5,0.5;DP4=1,1,0,2;MQ=48;PV4=1,0.35,0.019,1 PL:DP:SP:GT:GQ 36,0,52:4:0:0/1:39 +chr11 43919694 . C T 26 . DP=16;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=49 PL:DP:SP:GT:GQ 58,9,0:3:0:1/1:63 +chr11 43919757 . A ACGTC 5.08 . INDEL;DP=21;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 43919778 . C T 16.2 . DP=30;AF1=0.5064;CI95=0.5,0.5;DP4=0,1,2,1;MQ=47;PV4=1,0.22,0.21,1 PL:DP:SP:GT:GQ 46,0,16:4:0:0/1:19 +chr11 43919786 . C G 16.1 . DP=33;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=45 PL:DP:SP:GT:GQ 48,9,0:3:0:1/1:63 +chr11 43920809 . G C 7.97 . DP=5;AF1=0.5263;CI95=0.5,1;DP4=0,1,0,2;MQ=47;PV4=1,1,0.33,1 PL:DP:SP:GT:GQ 37,0,10:3:0:0/1:13 +chr11 43920979 . G A 99 . DP=18;AF1=1;CI95=1,1;DP4=0,0,14,4;MQ=49 PL:DP:SP:GT:GQ 193,54,0:18:0:1/1:99 +chr11 43930835 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 43940644 . G T 44.1 . DP=71;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=49 PL:DP:SP:GT:GQ 77,18,0:6:0:1/1:90 +chr11 43949796 . C CTGAGAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 43953005 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 43965485 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 43981127 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 43989021 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 44012074 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 44025832 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 44033087 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 44033613 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 44063178 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 44069487 . GACC GACCGCTCACC 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,102:4:0:0/1:41 +chr11 44080210 . T C 54 . DP=27;AF1=0.9999;CI95=0.5,1;DP4=1,0,1,6;MQ=49;PV4=0.25,0.47,0.29,1 PL:DP:SP:GT:GQ 84,3,0:8:0:1/1:41 +chr11 44089161 . G A 99 . DP=27;AF1=1;CI95=1,1;DP4=0,0,7,2;MQ=44 PL:DP:SP:GT:GQ 210,27,0:9:0:1/1:99 +chr11 44089570 . G C 19.8 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 51,6,0:2:0:1/1:49 +chr11 44104701 . CCTCT CCTCTCT 99 . INDEL;DP=44;AF1=1;CI95=1,1;DP4=0,0,29,11;MQ=50 PL:DP:SP:GT:GQ 255,117,0:40:0:1/1:99 +chr11 44104704 . CT CTAT 10.8 . INDEL;DP=47;AF1=0.5;CI95=0.5,0.5;DP4=2,2,2,0;MQ=50;PV4=0.47,1,1,1 PL:DP:SP:GT:GQ 48,0,92:6:3:0/1:51 +chr11 44116575 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 44124063 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 44124859 . at aTACACTACTCt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 44126740 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 44129500 . C G 29 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=3,4,0,5;MQ=48;PV4=0.2,0.0095,0.14,1 PL:DP:SP:GT:GQ 59,0,202:12:7:0/1:62 +chr11 44135743 . T G 30 . DP=49;AF1=0.5;CI95=0.5,0.5;DP4=23,1,0,13;MQ=49;PV4=3.9e-09,2.7e-05,0.0053,1 PL:DP:SP:GT:GQ 60,0,251:37:84:0/1:63 +chr11 44137271 . G GTGTCTGA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 44146257 . A G 91.1 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=45 PL:DP:SP:GT:GQ 124,18,0:6:0:1/1:90 +chr11 44159465 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 44166138 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 44180127 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 44207579 . T TCTGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 44253242 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 44255614 . T C 34.6 . DP=23;AF1=0.5939;CI95=0.5,1;DP4=1,0,5,0;MQ=48;PV4=1,0.44,0.27,1 PL:DP:SP:GT:GQ 64,0,5:6:0:0/1:7 +chr11 44256742 . G GGCCT 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 44258151 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 44286566 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 44289312 . C G 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 44290126 . T C 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 44297054 . T C 81 . DP=50;AF1=0.5;CI95=0.5,0.5;DP4=0,2,7,2;MQ=48;PV4=0.11,0.0093,0.16,1 PL:DP:SP:GT:GQ 111,0,41:11:10:0/1:44 +chr11 44339887 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 44373997 . A AGCCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 44376398 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 44387746 . c cTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 44388523 . AC ACGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 44394109 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 44394875 . tccctgcc tcc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 44426935 . T C 4.29 . DP=3;AF1=0.5334;CI95=0.5,1;DP4=1,0,0,2;MQ=49;PV4=0.33,1,0.17,0.014 PL:DP:SP:GT:GQ 32,0,9:3:0:0/1:12 +chr11 44434039 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 44456233 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 44482752 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 44501355 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 44511261 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 44515773 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 44526311 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 44586337 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 44619041 . T TCACTCTTGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 44626519 . A G 4.77 . DP=22;AF1=0.4999;CI95=0.5,0.5;DP4=5,1,4,0;MQ=47;PV4=1,0.16,0.13,1 PL:DP:SP:GT:GQ 33,0,102:10:0:0/1:36 +chr11 44636839 . C T 25 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=9,2,3,1;MQ=49;PV4=1,0.00096,0.00028,1 PL:DP:SP:GT:GQ 55,0,255:15:0:0/1:58 +chr11 44639921 . C T 6.98 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.042,0.26,1 PL:DP:SP:GT:GQ 36,0,41:3:0:0/1:38 +chr11 44640533 . GGT GGTAGTGTGT 5.84 . INDEL;DP=7;AF1=0.508;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 42,0,15:2:0:0/1:18 +chr11 44640640 . C G 79.1 . DP=31;AF1=0.508;CI95=0.5,0.5;DP4=1,2,3,7;MQ=47;PV4=1,1,0.018,1 PL:DP:SP:GT:GQ 109,0,15:13:0:0/1:18 +chr11 44640640 . CCAT CCATGCAT 39.5 . INDEL;DP=31;AF1=0.5;CI95=0.5,0.5;DP4=4,3,2,1;MQ=50;PV4=1,1,1,0.022 PL:DP:SP:GT:GQ 77,0,71:10:0:0/1:73 +chr11 44652449 . AGCATGATGTC A 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 44655411 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 44666785 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 44733207 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 44753212 . G A 10.4 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 44801298 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 44804083 . a aGTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 44815829 . A AGC 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 44822952 . tg tGCAg 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 44837942 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 44870405 . A G 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 44886820 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 44936569 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 44940873 . G A 40 . DP=47;AF1=0.5;CI95=0.5,0.5;DP4=1,21,0,20;MQ=50;PV4=1,1.5e-20,0.15,1 PL:DP:SP:GT:GQ 70,0,255:42:0:0/1:73 +chr11 44952285 . C T 7.8 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,44:2:0:0/1:39 +chr11 44952861 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 44959213 . C T 66 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,7;MQ=47;PV4=1,5.9e-05,0.0063,1 PL:DP:SP:GT:GQ 96,0,176:14:0:0/1:99 +chr11 44965433 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 45000079 . gt gTTAt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 45029635 . GAA GAAGTCAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 45047451 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 45153083 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 45170112 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 45181575 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 45217713 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 45221925 . TA TATCA 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr11 45226752 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 45235111 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 45250197 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 45250260 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 45250965 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 45252552 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 45292837 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 45304685 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 45312823 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 45313736 . tt tTAAGCCt 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 45314528 . G C 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 45327122 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 45341451 . TGAG TGAGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 45345784 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 45366481 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 45407206 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 45445919 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 45464231 . T G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 45479795 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 45486101 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 45494826 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 45503783 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 45533074 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 45535938 . GC GCTTC 16.6 . INDEL;DP=16;AF1=0.5;CI95=0.5,0.5;DP4=5,6,2,0;MQ=50;PV4=0.46,1,1,0.05 PL:DP:SP:GT:GQ 54,0,255:13:3:0/1:57 +chr11 45544983 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 45552371 . T A 6.79 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=42 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr11 45563420 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 45567354 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 45581596 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 45587691 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 45588670 . g gCC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 45591425 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 45611346 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 45620941 . c cCA 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 45621263 . A AGG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 45622153 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 45622155 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 45624776 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 45642689 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 45681521 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 45682825 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 45694198 . ctg cTGtg 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 45698366 . TTT TTTATT 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr11 45714460 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 45718182 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 45720364 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 45789384 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 45792792 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 45831049 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 45832574 . G C 3.01 . DP=13;AF1=0.4997;CI95=0.5,0.5;DP4=1,3,1,1;MQ=48;PV4=1,0.18,8.2e-06,0.24 PL:DP:SP:GT:GQ 30,0,102:6:0:0/1:33 +chr11 45833857 . G GGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 45867596 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 45877529 . A G 11.3 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=8,0,4,0;MQ=50;PV4=1,0.0072,0.045,1 PL:DP:SP:GT:GQ 41,0,178:12:0:0/1:44 +chr11 45903824 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 45916231 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 45919834 . G GAC 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.22 PL:DP:SP:GT:GQ 38,0,97:4:0:0/1:41 +chr11 45923635 . A G 7.89 . DP=5;AF1=0.5128;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,13:2:0:0/1:16 +chr11 45925494 . G T 10.4 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=11,0,4,0;MQ=48;PV4=1,0.016,0.0011,1 PL:DP:SP:GT:GQ 40,0,202:15:0:0/1:43 +chr11 45926079 . C T 18.1 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=1,9,0,5;MQ=49;PV4=1,1.2e-05,0.19,1 PL:DP:SP:GT:GQ 48,0,248:15:0:0/1:51 +chr11 45926445 . T C 99 . DP=43;AF1=0.5;CI95=0.5,0.5;DP4=3,14,8,12;MQ=49;PV4=0.17,5e-12,0.0019,1 PL:DP:SP:GT:GQ 177,0,255:37:8:0/1:99 +chr11 45926554 . A G 9.52 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=2,1,1,1;MQ=47;PV4=1,0.19,0.047,1 PL:DP:SP:GT:GQ 39,0,90:5:0:0/1:42 +chr11 45926772 . T A 3.01 . DP=7;AF1=0.4998;CI95=0.5,0.5;DP4=1,1,0,2;MQ=46;PV4=1,0.18,0.21,1 PL:DP:SP:GT:GQ 30,0,39:4:0:0/1:32 +chr11 45926783 . C A 8.64 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=1,4,0,3;MQ=47;PV4=1,0.39,0.43,0.017 PL:DP:SP:GT:GQ 38,0,83:8:0:0/1:41 +chr11 45926787 . G T 17.1 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,5;MQ=45;PV4=0.29,0.012,0.21,0.17 PL:DP:SP:GT:GQ 47,0,41:7:0:0/1:43 +chr11 45930504 . G T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 45932382 . GTCA GTCAACTCA 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=49;PV4=1,1,1,0.28 PL:DP:SP:GT:GQ 38,0,102:4:0:0/1:41 +chr11 45932811 . GC GCCAAAGACCAAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 45935384 . A G 59 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=2,6,1,4;MQ=48;PV4=1,0.0024,0.00054,1 PL:DP:SP:GT:GQ 89,0,245:13:0:0/1:92 +chr11 45935527 . T C 5.46 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,1,0;MQ=48;PV4=0.33,0.029,0,0.42 PL:DP:SP:GT:GQ 34,0,83:3:0:0/1:37 +chr11 45937267 . C T 99 . DP=31;AF1=1;CI95=0.5,1;DP4=1,1,15,9;MQ=44;PV4=1,1,2.1e-05,1 PL:DP:SP:GT:GQ 255,8,0:26:0:1/1:56 +chr11 45942347 . GGCC G 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 45944994 . GC GCC 99 . INDEL;DP=25;AF1=0.5;CI95=0.5,0.5;DP4=9,0,16,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 174,0,107:25:0:0/1:99 +chr11 45948577 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 45949201 . C T 72 . DP=12;AF1=0.5025;CI95=0.5,0.5;DP4=0,1,1,8;MQ=48;PV4=1,0.0006,0.27,0.037 PL:DP:SP:GT:GQ 102,0,20:10:0:0/1:23 +chr11 45955788 . G C 8.64 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=5,1,0,3;MQ=49;PV4=0.048,0.26,0.0071,0.4 PL:DP:SP:GT:GQ 38,0,119:9:13:0/1:41 +chr11 45955791 . A G 7.8 . DP=15;AF1=0.5003;CI95=0.5,0.5;DP4=1,0,0,2;MQ=47;PV4=0.33,0.042,0.13,0.25 PL:DP:SP:GT:GQ 37,0,29:3:0:0/1:31 +chr11 45959669 . C T 3.73 . DP=29;AF1=0.5429;CI95=0.5,1;DP4=1,0,2,0;MQ=49;PV4=1,1,0.33,1 PL:DP:SP:GT:GQ 31,0,8:3:0:0/1:11 +chr11 45975130 . C T 48 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=5,14,0,10;MQ=49;PV4=0.13,9.1e-08,0.00022,1 PL:DP:SP:GT:GQ 78,0,255:29:9:0/1:81 +chr11 46000327 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 46001229 . G C 99 . DP=41;AF1=1;CI95=1,1;DP4=0,0,39,1;MQ=49 PL:DP:SP:GT:GQ 144,120,0:40:0:1/1:99 +chr11 46012422 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 46023589 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 46041783 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 46070770 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 46078164 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 46080163 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 46095461 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 46098163 . C CCACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 46105688 . G A 45.1 . DP=32;AF1=1;CI95=0.5,1;DP4=1,0,11,0;MQ=49;PV4=1,0.49,1,0.44 PL:DP:SP:GT:GQ 78,18,0:12:0:1/1:90 +chr11 46132492 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 46168152 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 46186105 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 46226526 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 46237581 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 46239908 . T TGAAGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 46257134 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 46271539 . T TCTTGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 46292032 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 46301282 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 46312335 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 46316485 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 46323407 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 46340186 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 46356458 . caga c 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 46379549 . C CAGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 46389282 . T C 5.46 . DP=5;AF1=0.4999;CI95=0.5,0.5;DP4=0,3,0,2;MQ=49;PV4=1,0.022,0.14,1 PL:DP:SP:GT:GQ 34,0,109:5:0:0/1:37 +chr11 46392825 . C G 68 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=5,1,7,1;MQ=48;PV4=1,0.0091,0.02,1 PL:DP:SP:GT:GQ 98,0,135:14:0:0/1:99 +chr11 46398648 . T G 7.8 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 46400475 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 46406868 . TCCA T 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 46411920 . G GTCGTC 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 46417895 . C CGCCGGA 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 46431548 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 46434462 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 46436337 . A AACCTGGCC 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 46439707 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 46443443 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 46478629 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 46507390 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 46519023 . GC GCCTCCTCTCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 46541208 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 46625014 . A C 19.4 . DP=10;AF1=0.543;CI95=0.5,1;DP4=1,0,4,0;MQ=45;PV4=1,0.28,1,0.43 PL:DP:SP:GT:GQ 49,0,8:5:0:0/1:11 +chr11 46649673 . g gTCCAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 46679900 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 46686823 . C G 4.77 . DP=10;AF1=0.4999;CI95=0.5,0.5;DP4=3,0,2,0;MQ=49;PV4=1,0.14,0.0013,0.17 PL:DP:SP:GT:GQ 33,0,72:5:0:0/1:36 +chr11 46691495 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 46695977 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 46702160 . C T 13.9 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=47 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr11 46702646 . G C 37 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=6,2,0,7;MQ=49;PV4=0.007,0.00068,0.18,0.14 PL:DP:SP:GT:GQ 67,0,207:15:22:0/1:70 +chr11 46702920 . T C 5.29 . DP=41;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=49 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr11 46703775 . GGCG GG 3.25 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 46704935 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 46716846 . T G 3.54 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,0,1;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,44:2:0:0/1:34 +chr11 46722515 . A G 6.02 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr11 46722731 . T C 47.5 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=48 PL:DP:SP:GT:GQ 80,12,0:4:0:1/1:72 +chr11 46727011 . TT TTGAGT 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr11 46729507 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 46745003 . C T 60.8 . DP=24;AF1=1;CI95=0.5,1;DP4=0,2,0,13;MQ=48;PV4=1,1,0.039,0.15 PL:DP:SP:GT:GQ 93,10,0:15:0:1/1:60 +chr11 46765194 . C CCGTGAAGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 46776697 . A G 31.8 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 63,6,0:2:0:1/1:49 +chr11 46791430 . T TACGCTC 7.49 . INDEL;DP=8;AF1=0.5207;CI95=0.5,1;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,11:2:0:0/1:14 +chr11 46793963 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 46798676 . ct cTCGATCTTGTGt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 46801561 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 46804973 . A G 39.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=45 PL:DP:SP:GT:GQ 72,12,0:4:0:1/1:72 +chr11 46818549 . T G 4.53 . DP=7;AF1=0.5938;CI95=0.5,1;DP4=0,1,0,2;MQ=47;PV4=1,1,0.23,1 PL:DP:SP:GT:GQ 32,0,5:3:0:0/1:7 +chr11 46839939 . GTGAC GTCTTCTCTGAC 3.25 . INDEL;DP=17;AF1=0.5;CI95=0.5,0.5;DP4=1,2,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,130:4:0:0/1:41 +chr11 46839944 . AA ACGA 3.25 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,0;MQ=50;PV4=1,0.33,1,1 PL:DP:SP:GT:GQ 38,0,88:3:0:0/1:41 +chr11 46878432 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 46880675 . G C 11.3 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=2,6,4,0;MQ=47;PV4=0.061,0.026,0.14,0.14 PL:DP:SP:GT:GQ 41,0,206:12:12:0/1:44 +chr11 46885568 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 46890197 . G A 13.2 . DP=34;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=50 PL:DP:SP:GT:GQ 45,9,0:3:0:1/1:63 +chr11 46897446 . G A 99 . DP=39;AF1=1;CI95=1,1;DP4=0,0,18,16;MQ=47 PL:DP:SP:GT:GQ 255,102,0:34:0:1/1:99 +chr11 46897972 . G C 22 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 54,9,0:3:0:1/1:63 +chr11 46900659 . G T 99 . DP=40;AF1=1;CI95=1,1;DP4=1,0,20,16;MQ=48;PV4=1,1,0.17,1 PL:DP:SP:GT:GQ 255,92,0:37:0:1/1:99 +chr11 46910925 . C G 8.64 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=1,5,3,0;MQ=48;PV4=0.048,1,0.00087,1 PL:DP:SP:GT:GQ 38,0,77:9:13:0/1:41 +chr11 46913037 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 46914583 . T C 31 . DP=27;AF1=0.6671;CI95=0.5,1;DP4=0,1,1,3;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 60,0,3:5:0:0/1:5 +chr11 46914598 . A G 99 . DP=31;AF1=1;CI95=1,1;DP4=1,0,16,5;MQ=44;PV4=1,1,0.00011,1 PL:DP:SP:GT:GQ 255,41,0:22:0:1/1:99 +chr11 46918580 . C T 7.8 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=1,4,0,3;MQ=48;PV4=1,0.028,0.024,0.075 PL:DP:SP:GT:GQ 37,0,102:8:0:0/1:40 +chr11 46921593 . AA AACA 7.35 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,37:2:0:0/1:39 +chr11 46921978 . C A 4.77 . DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,2;MQ=47;PV4=1,0.38,0.029,0.29 PL:DP:SP:GT:GQ 33,0,40:4:0:0/1:35 +chr11 46940272 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 46954666 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 46963530 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 46965380 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 46999921 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 47028139 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 47036563 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 47040177 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 47042466 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 47089210 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 47106002 . at aTGATCATTt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 47117332 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 47130856 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 47152677 . A ACAG 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 47179864 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 47182774 . G T 57.4 . DP=17;AF1=1;CI95=0.5,1;DP4=0,1,0,8;MQ=47;PV4=1,1,0.2,1 PL:DP:SP:GT:GQ 90,13,0:9:0:1/1:65 +chr11 47182914 . T A 4.77 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,44:2:0:0/1:36 +chr11 47188314 . T C 18.7 . DP=25;AF1=0.5939;CI95=0.5,1;DP4=0,1,0,5;MQ=48;PV4=1,0.042,0.35,1 PL:DP:SP:GT:GQ 48,0,5:6:0:0/1:7 +chr11 47193367 . T G 45.5 . DP=32;AF1=0.9998;CI95=0.5,1;DP4=0,1,1,5;MQ=49;PV4=1,1,0.25,1 PL:DP:SP:GT:GQ 75,2,0:7:0:1/1:37 +chr11 47196982 . C T 17.1 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 49,9,0:3:0:1/1:63 +chr11 47201924 . G A 39.5 . DP=22;AF1=0.5718;CI95=0.5,1;DP4=0,1,0,6;MQ=48;PV4=1,0.12,1,1 PL:DP:SP:GT:GQ 69,0,6:7:0:0/1:8 +chr11 47207831 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 47220619 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 47222000 . aT aTTTCTCAATCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 47228971 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 47228978 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 47238522 . T C 99 . DP=55;AF1=0.7303;CI95=0.5,1;DP4=1,1,9,6;MQ=48;PV4=1,0.073,0.11,1 PL:DP:SP:GT:GQ 141,0,2:17:0:0/1:3 +chr11 47238665 . A G 12 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr11 47260272 . T C 9.31 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr11 47260448 . A T 10.2 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=42 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr11 47266808 . T G 60.1 . DP=21;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=48 PL:DP:SP:GT:GQ 93,18,0:6:0:1/1:90 +chr11 47269159 . T C 25.2 . DP=10;AF1=0.7303;CI95=0.5,1;DP4=1,0,3,0;MQ=48;PV4=1,1,0.21,1 PL:DP:SP:GT:GQ 54,0,2:4:0:0/1:3 +chr11 47270255 . C T 44.3 . DP=13;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=48 PL:DP:SP:GT:GQ 77,15,0:5:0:1/1:75 +chr11 47270443 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 47281821 . A G 8.65 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 47282024 . C T 99 . DP=22;AF1=1;CI95=1,1;DP4=0,0,11,6;MQ=46 PL:DP:SP:GT:GQ 227,51,0:17:0:1/1:99 +chr11 47294725 . A ACATG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 47305669 . T G 16.6 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=50 PL:DP:SP:GT:GQ 49,12,0:4:0:1/1:72 +chr11 47306585 . G A 99 . DP=57;AF1=1;CI95=1,1;DP4=0,1,24,22;MQ=48;PV4=0.49,1,0.15,1 PL:DP:SP:GT:GQ 255,121,0:47:0:1/1:99 +chr11 47310617 . TTCTCT TTCTCTCT,TACCTCTCT 4.59 . INDEL;DP=18;AF1=0.5336;CI95=0.5,1;DP4=0,2,0,5;MQ=50;PV4=1,1,1,0.014 PL:DP:SP:GT:GQ 44,4,27,13,0,39:7:0:0/1:12 +chr11 47312374 . A G 32.8 . DP=33;AF1=1;CI95=0.5,1;DP4=0,2,1,26;MQ=50;PV4=1,2.3e-07,0.34,1 PL:DP:SP:GT:GQ 65,10,0:29:0:1/1:60 +chr11 47314247 . T C 6.79 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr11 47315428 . A C 36 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=1,1,4,0;MQ=48;PV4=0.33,0.12,0.0082,1 PL:DP:SP:GT:GQ 66,0,56:6:0:0/1:59 +chr11 47317042 . T C 54 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=6,0,11,0;MQ=48;PV4=1,0.0064,0.3,1 PL:DP:SP:GT:GQ 84,0,83:17:0:0/1:83 +chr11 47317625 . CAAAAGAAAA CAAAA 99 . INDEL;DP=12;AF1=1;CI95=1,1;DP4=0,0,0,10;MQ=50 PL:DP:SP:GT:GQ 235,30,0:10:0:1/1:99 +chr11 47318182 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 47331116 . T C 83.5 . DP=72;AF1=1;CI95=0.5,1;DP4=1,0,2,8;MQ=48;PV4=0.27,0.23,0.24,1 PL:DP:SP:GT:GQ 115,7,0:11:0:1/1:57 +chr11 47333594 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 47345100 . T C 46.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=45 PL:DP:SP:GT:GQ 79,12,0:4:0:1/1:72 +chr11 47348237 . G T 32 . DP=12;AF1=0.5001;CI95=0.5,0.5;DP4=4,0,6,0;MQ=49;PV4=1,1,0.032,1 PL:DP:SP:GT:GQ 62,0,33:10:0:0/1:36 +chr11 47350553 . G C 89 . DP=32;AF1=1;CI95=1,1;DP4=1,0,22,0;MQ=48;PV4=1,1,0.2,0.092 PL:DP:SP:GT:GQ 122,50,0:23:0:1/1:99 +chr11 47351165 . GG GGCACATTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 47367655 . T A 3.02 . DP=2;AF1=0.5001;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,28:2:0:0/1:29 +chr11 47373249 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 47373963 . T TTTTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 47377118 . T TTAC 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr11 47380593 . G A 6.79 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr11 47380688 . GGAAGAAGA GGAAGA 99 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=50 PL:DP:SP:GT:GQ 142,9,0:3:0:1/1:63 +chr11 47381271 . C A 4.15 . DP=2;AF1=0.503;CI95=0.5,0.5;DP4=1,0,0,1;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,19:2:0:0/1:22 +chr11 47385556 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 47396881 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 47397352 . C T 31 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,4;MQ=49;PV4=1,0.16,0.2,0.14 PL:DP:SP:GT:GQ 61,0,51:6:0:0/1:54 +chr11 47397582 . T A 3.01 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,30:2:0:0/1:30 +chr11 47397993 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 47431728 . A G 12.7 . DP=13;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=50 PL:DP:SP:GT:GQ 45,12,0:4:0:1/1:72 +chr11 47432034 . G C 53 . DP=21;AF1=1;CI95=1,1;DP4=0,0,0,16;MQ=50 PL:DP:SP:GT:GQ 86,48,0:16:0:1/1:99 +chr11 47434986 . G A 99 . DP=24;AF1=1;CI95=1,1;DP4=0,0,0,20;MQ=47 PL:DP:SP:GT:GQ 156,60,0:20:0:1/1:99 +chr11 47436531 . G T 17.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=48 PL:DP:SP:GT:GQ 49,6,0:2:0:1/1:49 +chr11 47439859 . C CAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 47440446 . G A 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 47442203 . G C 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 47444568 . C CAGTCA 7.35 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 47446220 . T G 35 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=4,3,0,6;MQ=48;PV4=0.07,0.035,0.016,1 PL:DP:SP:GT:GQ 65,0,175:13:12:0/1:68 +chr11 47447346 . C T 99 . DP=8;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=44 PL:DP:SP:GT:GQ 143,24,0:8:0:1/1:96 +chr11 47447443 . G C 27 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=6,7,4,1;MQ=49;PV4=0.31,0.18,0.051,1 PL:DP:SP:GT:GQ 57,0,225:18:5:0/1:60 +chr11 47463483 . AGG AG 20.3 . INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 59,6,0:2:0:1/1:49 +chr11 47469439 . A G 99 . DP=19;AF1=1;CI95=1,1;DP4=0,0,3,14;MQ=45 PL:DP:SP:GT:GQ 253,51,0:17:0:1/1:99 +chr11 47488705 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 47492387 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 47493976 . T A 13.9 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr11 47504534 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 47537047 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 47544405 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 47554538 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 47576001 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 47583212 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 47591060 . T A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 47603685 . G C 40 . DP=46;AF1=0.5;CI95=0.5,0.5;DP4=9,5,0,9;MQ=47;PV4=0.0026,0.0035,0.1,1 PL:DP:SP:GT:GQ 70,0,255:23:26:0/1:73 +chr11 47631365 . G GAT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 47631729 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 47640313 . G C 7.8 . DP=8;AF1=0.5003;CI95=0.5,0.5;DP4=1,0,3,0;MQ=49;PV4=1,0.05,0.37,1 PL:DP:SP:GT:GQ 37,0,28:4:0:0/1:30 +chr11 47640355 . C T 31 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=5,0,10,0;MQ=49;PV4=1,0.0033,0.024,1 PL:DP:SP:GT:GQ 61,0,104:15:0:0/1:64 +chr11 47640367 . T A 44 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=8,2,10,1;MQ=49;PV4=0.59,9e-09,0.3,1 PL:DP:SP:GT:GQ 74,0,248:21:2:0/1:77 +chr11 47651016 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 47653197 . C T 21 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=13,2,0,4;MQ=48;PV4=0.0039,0.056,0.0018,1 PL:DP:SP:GT:GQ 51,0,252:19:24:0/1:54 +chr11 47668963 . C G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 47671435 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 47704131 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 47722118 . C T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 47736314 . C G 72 . DP=13;AF1=1;CI95=1,1;DP4=0,0,0,10;MQ=49 PL:DP:SP:GT:GQ 105,30,0:10:0:1/1:99 +chr11 47752840 . AC ACGGTC 7.39 . INDEL;DP=6;AF1=0.5063;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,16:2:0:0/1:19 +chr11 47772401 . C T 3.52 . DP=25;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 33,9,0:3:0:1/1:63 +chr11 47776047 . G A 67.5 . DP=45;AF1=1;CI95=0.5,1;DP4=0,1,4,2;MQ=48;PV4=0.43,1,0.2,1 PL:DP:SP:GT:GQ 99,7,0:7:0:1/1:57 +chr11 47776283 . C T 63.1 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=48 PL:DP:SP:GT:GQ 96,18,0:6:0:1/1:90 +chr11 47784993 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 47808102 . TG TGGTACATCG 5.08 . INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.13 PL:DP:SP:GT:GQ 41,0,61:3:0:0/1:44 +chr11 47813436 . C T 38.1 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=50 PL:DP:SP:GT:GQ 71,18,0:6:0:1/1:90 +chr11 47819426 . A T 36 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,6;MQ=48;PV4=1,1,0.038,1 PL:DP:SP:GT:GQ 66,0,67:12:0:0/1:66 +chr11 47826090 . A C 7.89 . DP=24;AF1=0.5128;CI95=0.5,0.5;DP4=1,0,3,0;MQ=50;PV4=1,0.19,0.33,1 PL:DP:SP:GT:GQ 37,0,13:4:0:0/1:16 +chr11 47834346 . G A 44 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=45 PL:DP:SP:GT:GQ 76,9,0:3:0:1/1:63 +chr11 47834592 . G A 91 . DP=14;AF1=1;CI95=1,1;DP4=0,0,1,11;MQ=49 PL:DP:SP:GT:GQ 124,36,0:12:0:1/1:99 +chr11 47837408 . G C 7.8 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 47837638 . G A 61.1 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=47 PL:DP:SP:GT:GQ 94,18,0:6:0:1/1:90 +chr11 47857253 . T C 99 . DP=83;AF1=1;CI95=1,1;DP4=2,0,34,34;MQ=47;PV4=0.49,0.14,0.049,1 PL:DP:SP:GT:GQ 255,150,0:70:3:1/1:99 +chr11 47862868 . CC CCGC 3.25 . INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,86:4:0:0/1:41 +chr11 47862958 . CA CATGTGA 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.061 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr11 47866021 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 47869855 . C T 31 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=0,9,0,8;MQ=49;PV4=1,3.6e-07,0.036,1 PL:DP:SP:GT:GQ 61,0,199:17:0:0/1:64 +chr11 47874065 . t tACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 47902560 . A ACCCGCGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 47904596 . a aATGAGGCTCGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 47944465 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 47953089 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 48014687 . G GAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 48028007 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 48029698 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 48040230 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 48040246 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 48044432 . C CTGTCGGAG 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 48077917 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 48079033 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 48090161 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 48098070 . CTC CTCTACTTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 48121176 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 48144210 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 48148399 . A ATGGGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 48149652 . C A 7.8 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=0,12,0,5;MQ=49;PV4=1,0.29,0.0014,1 PL:DP:SP:GT:GQ 37,0,127:17:0:0/1:40 +chr11 48175315 . A T 24 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=48 PL:DP:SP:GT:GQ 56,9,0:3:0:1/1:63 +chr11 48181721 . G T,C 42.5 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=46 PL:DP:SP:GT:GQ 78,15,70,3,0,70:5:0:1/1:72 +chr11 48185875 . A G 6.2 . DP=12;AF1=0.5004;CI95=0.5,0.5;DP4=2,0,2,0;MQ=49;PV4=1,1,0.21,0.4 PL:DP:SP:GT:GQ 35,0,27:4:0:0/1:29 +chr11 48201427 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 48214604 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 48238421 . T G 28 . DP=62;AF1=0.5005;CI95=0.5,0.5;DP4=1,1,2,3;MQ=49;PV4=1,0.35,0.17,1 PL:DP:SP:GT:GQ 58,0,27:7:0:0/1:30 +chr11 48238549 . G A 99 . DP=61;AF1=1;CI95=1,1;DP4=1,0,23,22;MQ=43;PV4=1,1,0.0019,1 PL:DP:SP:GT:GQ 255,107,0:46:0:1/1:99 +chr11 48238952 . G T 16.3 . DP=15;AF1=0.5207;CI95=0.5,1;DP4=0,1,0,3;MQ=46;PV4=1,0.46,0.22,1 PL:DP:SP:GT:GQ 46,0,11:4:0:0/1:14 +chr11 48239182 . C A 44.5 . DP=30;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=48 PL:DP:SP:GT:GQ 77,12,0:4:0:1/1:72 +chr11 48249574 . G T 3.54 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=43;PV4=1,1,1,0.34 PL:DP:SP:GT:GQ 31,0,31:4:0:0/1:31 +chr11 48265618 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 48266582 . A C 99 . DP=16;AF1=1;CI95=1,1;DP4=0,0,14,0;MQ=48 PL:DP:SP:GT:GQ 135,42,0:14:0:1/1:99 +chr11 48267589 . A G 99 . DP=42;AF1=1;CI95=1,1;DP4=0,1,0,34;MQ=47;PV4=1,1,0.0074,1 PL:DP:SP:GT:GQ 137,85,0:35:0:1/1:99 +chr11 48273237 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 48285842 . A G 3.03 . DP=60;AF1=0.5029;CI95=0.5,0.5;DP4=0,1,2,1;MQ=50;PV4=1,0.0026,1,1 PL:DP:SP:GT:GQ 30,0,19:4:0:0/1:22 +chr11 48326443 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 48328644 . C T 99 . DP=26;AF1=1;CI95=1,1;DP4=0,0,6,17;MQ=43 PL:DP:SP:GT:GQ 255,69,0:23:0:1/1:99 +chr11 48342368 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 48346465 . AA AACA 5.08 . INDEL;DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,2,1,0;MQ=50;PV4=0.33,1,1,1 PL:DP:SP:GT:GQ 41,0,79:3:0:0/1:44 +chr11 48346916 . G C 27 . DP=55;AF1=0.5;CI95=0.5,0.5;DP4=15,25,3,9;MQ=48;PV4=0.51,2.3e-07,2.2e-05,1 PL:DP:SP:GT:GQ 57,0,255:52:3:0/1:60 +chr11 48347140 . T C 99 . DP=11;AF1=1;CI95=1,1;DP4=0,0,2,6;MQ=48 PL:DP:SP:GT:GQ 140,24,0:8:0:1/1:96 +chr11 48347267 . T C 9.52 . DP=28;AF1=0.5;CI95=0.5,0.5;DP4=18,1,5,1;MQ=49;PV4=0.43,1e-05,2.7e-06,1 PL:DP:SP:GT:GQ 39,0,255:25:4:0/1:42 +chr11 48350962 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 48367398 . C A 3.98 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 33,6,0:2:0:1/1:49 +chr11 48367474 . A G 13.2 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,7,0,3;MQ=49;PV4=1,0.069,0.00012,1 PL:DP:SP:GT:GQ 43,0,209:11:0:0/1:46 +chr11 48379062 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 48387348 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 48387490 . G A 25 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=3,2,0,3;MQ=49;PV4=0.2,0.00026,0.025,0.32 PL:DP:SP:GT:GQ 55,0,195:8:7:0/1:58 +chr11 48442620 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 48486577 . T TGTGGTG 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 48493622 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 48494305 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 48510935 . G T 5.46 . DP=24;AF1=0.4999;CI95=0.5,0.5;DP4=0,8,1,3;MQ=48;PV4=0.33,1,0.1,0.25 PL:DP:SP:GT:GQ 34,0,80:12:0:0/1:37 +chr11 48517216 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 48518693 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 48526216 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 48534153 . T TCA 5.09 . INDEL;DP=3;AF1=0.5012;CI95=0.5,0.5;DP4=1,1,1,0;MQ=32;PV4=1,1,1,0.31 PL:DP:SP:GT:GQ 41,0,23:3:0:0/1:26 +chr11 48548076 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 48582415 . TTA TTATGTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 48599744 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 48609183 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 48611693 . T C 5.47 . DP=6;AF1=0.5012;CI95=0.5,0.5;DP4=1,0,0,2;MQ=44;PV4=0.33,0.0097,1,0.077 PL:DP:SP:GT:GQ 34,0,23:3:0:0/1:26 +chr11 48611800 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 48632402 . G C 10.2 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr11 48639840 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 48643658 . C CTGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 48647497 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 48673052 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 48673967 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 48711769 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 48731026 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 48759752 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 48796808 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 48809190 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 48880851 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 48895989 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 48928633 . A G 31 . DP=14;AF1=1;CI95=1,1;DP4=0,0,13,0;MQ=14 PL:DP:SP:GT:GQ 64,39,0:13:0:1/1:99 +chr11 48961028 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 48969610 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 48972984 . T A 21.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=40 PL:DP:SP:GT:GQ 53,6,0:2:0:1/1:49 +chr11 48986372 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 49000558 . G A 34.8 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=42 PL:DP:SP:GT:GQ 66,6,0:2:0:1/1:49 +chr11 49010832 . A G 27.5 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,3,1;MQ=37 PL:DP:SP:GT:GQ 60,12,0:4:0:1/1:72 +chr11 49026866 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 49058963 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 49059036 . T C 3.55 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 49078377 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 49085082 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 49088611 . C G 31 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,2,3,0;MQ=36;PV4=0.1,0.074,0.33,0.4 PL:DP:SP:GT:GQ 61,0,46:5:10:0/1:49 +chr11 49090429 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 49090857 . T C 4.77 . DP=3;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,39:2:0:0/1:35 +chr11 49176095 . T G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 49194894 . G A 86 . DP=11;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=48 PL:DP:SP:GT:GQ 119,27,0:9:0:1/1:99 +chr11 49195090 . T C 99 . DP=9;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=43 PL:DP:SP:GT:GQ 197,27,0:9:0:1/1:99 +chr11 49207251 . CT CTTTT 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 49207315 . A G 7.81 . DP=5;AF1=0.5015;CI95=0.5,0.5;DP4=0,1,0,1;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,22:2:0:0/1:25 +chr11 49208396 . C G 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 49214497 . C A 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 49221996 . G GNNNNNN 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,3,1,0;MQ=50;PV4=0.25,1,1,1 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr11 49227620 . A G 80.1 . DP=8;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=47 PL:DP:SP:GT:GQ 113,21,0:7:0:1/1:84 +chr11 49238712 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 49238722 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 49249180 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 49278548 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 49302478 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 49302480 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 49321936 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 49329832 . C T 4.86 . DP=3;AF1=0.5162;CI95=0.5,0.5;DP4=0,1,0,1;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,12:2:0:0/1:15 +chr11 49356723 . GC GCCACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 49379830 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 49395197 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 49431337 . T G 13 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=42 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr11 49439649 . GA GACATA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 49441583 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 49455620 . A G 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 49474807 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 49510608 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 49516749 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 49519973 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 49547633 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 49554027 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 49557741 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 49597799 . C T 99 . DP=10;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=46 PL:DP:SP:GT:GQ 165,27,0:9:0:1/1:99 +chr11 49598178 . G A 97.1 . DP=8;AF1=1;CI95=1,1;DP4=0,0,2,5;MQ=47 PL:DP:SP:GT:GQ 130,21,0:7:0:1/1:84 +chr11 49598393 . C T 4.13 . DP=5;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,0,1;MQ=48;PV4=0.33,1,0,1 PL:DP:SP:GT:GQ 32,0,64:3:0:0/1:35 +chr11 49615499 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 49640097 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 49645095 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 49660987 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 49669537 . g gTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 49686749 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 49702301 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 49742364 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 49759821 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 49762720 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 49803946 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 49827825 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 49856261 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 49856391 . T G 3.55 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 49857992 . C CGT 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,0.27 PL:DP:SP:GT:GQ 38,0,72:4:0:0/1:41 +chr11 49858099 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 49884040 . T A 3.54 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=0,2,0,1;MQ=47;PV4=1,1,0.089,0.42 PL:DP:SP:GT:GQ 31,0,59:3:0:0/1:34 +chr11 49893263 . T C 16.6 . DP=11;AF1=0.5718;CI95=0.5,1;DP4=1,0,3,0;MQ=47;PV4=1,1,0.0099,1 PL:DP:SP:GT:GQ 46,0,6:4:0:0/1:8 +chr11 49895365 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 49903103 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 49915851 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 49942197 . C T 10.2 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr11 49942464 . A ATC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 49964482 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 49974371 . G A 91.5 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=35 PL:DP:SP:GT:GQ 124,12,0:4:0:1/1:72 +chr11 49974670 . C T 82.6 . DP=9;AF1=0.5939;CI95=0.5,1;DP4=0,1,6,0;MQ=46;PV4=0.14,1,0.17,0.21 PL:DP:SP:GT:GQ 112,0,5:7:0:0/1:7 +chr11 50049526 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 50061996 . C T 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 50073718 . t tCGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 50129637 . T TAG 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,38:2:0:0/1:40 +chr11 50137115 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 50137127 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 50161489 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 50178735 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 50206012 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 50227514 . C G 14.2 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=8,0,2,2;MQ=49;PV4=0.091,0.024,0.033,0.28 PL:DP:SP:GT:GQ 44,0,156:12:10:0/1:47 +chr11 50228063 . T C 77 . DP=13;AF1=1;CI95=1,1;DP4=0,0,3,9;MQ=50 PL:DP:SP:GT:GQ 110,36,0:12:0:1/1:99 +chr11 50292828 . C T 3.15 . DP=2;AF1=0.5333;CI95=0.5,1;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,9:2:0:0/1:12 +chr11 50315625 . AC ACTGGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 50331762 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 50339395 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 50359342 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 50375254 . T C 39 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=2,2,4,0;MQ=48;PV4=0.43,0.11,0.02,1 PL:DP:SP:GT:GQ 69,0,119:8:4:0/1:72 +chr11 50375336 . A G 4.13 . DP=9;AF1=0.4998;CI95=0.5,0.5;DP4=1,2,3,0;MQ=47;PV4=0.4,0.051,0.016,1 PL:DP:SP:GT:GQ 32,0,101:6:4:0/1:35 +chr11 50384240 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 50492385 . t tCTCCTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 50496551 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 50531554 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 50535272 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 50544415 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 50557413 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 50585085 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 50606917 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 50611519 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 50710615 . t tGAGAGAAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 50769256 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 51143923 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 51166058 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 51237328 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 51382549 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 51382553 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 51412453 . C T 42.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=25 PL:DP:SP:GT:GQ 75,12,0:4:0:1/1:72 +chr11 51426572 . A C 48.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=48 PL:DP:SP:GT:GQ 81,12,0:4:0:1/1:72 +chr11 51428200 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 51434418 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 51435852 . G T 3.98 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=50 PL:DP:SP:GT:GQ 33,6,0:2:0:1/1:49 +chr11 51436430 . A ATTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 51445883 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 51451321 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 51459023 . C A 18.1 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=48;PV4=1,1,0.013,1 PL:DP:SP:GT:GQ 48,0,39:6:0:0/1:41 +chr11 51474258 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 51487083 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 51516112 . T TGTC 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 51516136 . T C 3.05 . DP=2;AF1=0.5078;CI95=0.5,0.5;DP4=1,0,1,0;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,15:2:0:0/1:18 +chr11 51526227 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 51526880 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 51552332 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 51562907 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 54699744 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 54778245 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 54817619 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 54824101 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 54835470 . ca cATATa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 54837522 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 54872505 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 54926130 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 54990259 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 54996929 . t tTCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 55031314 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 55035128 . A C,G 3.41 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=16 PL:DP:SP:GT:GQ 32,6,34,0,3,34:3:0:1/1:49 +chr11 55069621 . T TGACTTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 55076571 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 55099607 . ct cTGTTt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 55107774 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 55120579 . G C 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 55125140 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 55165739 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 55198174 . A G 64 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,1,3,0;MQ=46;PV4=0.4,1,0,1 PL:DP:SP:GT:GQ 94,0,73:5:0:0/1:76 +chr11 55198310 . A G 99 . DP=12;AF1=1;CI95=1,1;DP4=0,0,4,5;MQ=42 PL:DP:SP:GT:GQ 151,27,0:9:0:1/1:99 +chr11 55223894 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 55234605 . G A 61 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=4,1,5,2;MQ=33;PV4=1,0.00034,0.25,0.4 PL:DP:SP:GT:GQ 91,0,107:12:0:0/1:94 +chr11 55243383 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 55245698 . G A 80.5 . DP=20;AF1=1;CI95=0.5,1;DP4=0,1,2,10;MQ=36;PV4=1,0.26,0.096,0.082 PL:DP:SP:GT:GQ 113,12,0:13:0:1/1:72 +chr11 55258754 . A G 7.02 . DP=4;AF1=0.5063;CI95=0.5,0.5;DP4=1,0,1,1;MQ=48;PV4=1,0.4,0.077,1 PL:DP:SP:GT:GQ 36,0,16:3:0:0/1:19 +chr11 55259016 . C T 6.98 . DP=7;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,2;MQ=47;PV4=1,0.07,0.43,0.46 PL:DP:SP:GT:GQ 36,0,65:4:0:0/1:39 +chr11 55290902 . ACCT ACCTGCCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 55322638 . C T 99 . DP=62;AF1=0.5;CI95=0.5,0.5;DP4=13,12,15,16;MQ=49;PV4=1,8.8e-10,0.0016,1 PL:DP:SP:GT:GQ 220,0,255:56:0:0/1:99 +chr11 55325881 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 55327077 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 55337789 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 55371095 . C T 15.1 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=16,4,0,7;MQ=49;PV4=0.00037,1.7e-05,0.0015,1 PL:DP:SP:GT:GQ 45,0,255:27:34:0/1:48 +chr11 55391145 . gtct g 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 55402980 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 55432719 . C G 39 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=10,5,0,11;MQ=48;PV4=0.00072,0.0072,0.047,1 PL:DP:SP:GT:GQ 69,0,239:26:31:0/1:72 +chr11 55433604 . A G 20.2 . DP=9;AF1=0.5129;CI95=0.5,0.5;DP4=0,1,0,3;MQ=47;PV4=1,0.43,0.23,0.41 PL:DP:SP:GT:GQ 50,0,13:4:0:0/1:16 +chr11 55463373 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 55471187 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 55482401 . G T 15.9 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 47,6,0:2:0:1/1:49 +chr11 55482450 . G A 33.2 . DP=6;AF1=0.7303;CI95=0.5,1;DP4=1,0,5,0;MQ=30;PV4=1,1,0.081,0.11 PL:DP:SP:GT:GQ 62,0,2:6:0:0/1:3 +chr11 55488750 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 55495084 . AC ACGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 55516465 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 55516478 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 55541098 . G A 99 . DP=53;AF1=1;CI95=1,1;DP4=1,1,22,20;MQ=47;PV4=1,1,0.037,1 PL:DP:SP:GT:GQ 255,87,0:44:0:1/1:99 +chr11 55544888 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 55562557 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 55563336 . A T 99 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=8,6,5,6;MQ=48;PV4=0.7,0.00035,4.9e-09,1 PL:DP:SP:GT:GQ 166,0,255:25:2:0/1:99 +chr11 55563602 . G A 8.64 . DP=76;AF1=0.5;CI95=0.5,0.5;DP4=22,24,5,7;MQ=50;PV4=0.76,6.3e-10,8.4e-05,0.45 PL:DP:SP:GT:GQ 38,0,255:58:1:0/1:41 +chr11 55563738 . G A 99 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=1,11,4,11;MQ=49;PV4=0.34,1.7e-07,0.093,1 PL:DP:SP:GT:GQ 152,0,246:27:5:0/1:99 +chr11 55563776 . T G 3.98 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=50 PL:DP:SP:GT:GQ 33,6,0:2:0:1/1:49 +chr11 55587117 . T A 99 . DP=23;AF1=1;CI95=1,1;DP4=0,0,17,3;MQ=44 PL:DP:SP:GT:GQ 255,60,0:20:0:1/1:99 +chr11 55587511 . A G 21.2 . DP=39;AF1=0.5163;CI95=0.5,1;DP4=0,1,0,3;MQ=48;PV4=1,1,0.21,1 PL:DP:SP:GT:GQ 51,0,12:4:0:0/1:15 +chr11 55594620 . AACTA AA 4.42 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.26 PL:DP:SP:GT:GQ 40,0,60:3:0:0/1:43 +chr11 55600616 . ta tAGCa 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 55606818 . C T 9.52 . DP=47;AF1=0.5;CI95=0.5,0.5;DP4=16,10,5,1;MQ=49;PV4=0.64,0.00033,1.8e-10,0.34 PL:DP:SP:GT:GQ 39,0,255:32:2:0/1:42 +chr11 55630066 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 55636487 . G T 3.18 . DP=2;AF1=0.5428;CI95=0.5,1;DP4=1,0,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,8:2:0:0/1:11 +chr11 55647282 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 55656403 . A C 4.61 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 55656483 . T A 4.13 . DP=5;AF1=0.4998;CI95=0.5,0.5;DP4=1,2,0,2;MQ=34;PV4=1,0.092,0.48,1 PL:DP:SP:GT:GQ 32,0,80:5:0:0/1:35 +chr11 55659174 . T G 3.6 . DP=4;AF1=0.5127;CI95=0.5,0.5;DP4=0,1,0,2;MQ=45;PV4=1,0.33,0.17,0.44 PL:DP:SP:GT:GQ 31,0,13:3:0:0/1:16 +chr11 55681015 . A T 10.2 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=46 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr11 55681494 . G A 70.1 . DP=37;AF1=1;CI95=0.5,1;DP4=0,0,4,2;MQ=49 PL:DP:SP:GT:GQ 103,18,0:6:0:1/1:90 +chr11 55681851 . C G 99 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=6,14,7,6;MQ=49;PV4=0.28,1.1e-14,0.00015,1 PL:DP:SP:GT:GQ 129,0,255:33:6:0/1:99 +chr11 55688015 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 55703339 . A C 4.77 . DP=12;AF1=0.4999;CI95=0.5,0.5;DP4=1,4,3,0;MQ=49;PV4=0.14,0.078,0.021,1 PL:DP:SP:GT:GQ 33,0,115:8:8:0/1:36 +chr11 55703351 . T C 3.01 . DP=14;AF1=0.4997;CI95=0.5,0.5;DP4=3,2,2,1;MQ=49;PV4=1,0.023,0.021,0.29 PL:DP:SP:GT:GQ 30,0,160:8:0:0/1:33 +chr11 55709822 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 55712556 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 55761528 . T C 99 . DP=48;AF1=0.5;CI95=0.5,0.5;DP4=12,7,13,12;MQ=49;PV4=0.55,2.7e-12,0.025,1 PL:DP:SP:GT:GQ 161,0,255:44:3:0/1:99 +chr11 55761675 . T G,C 6.02 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=47 PL:DP:SP:GT:GQ 54,24,35,18,0,35:3:0:1/1:49 +chr11 55781475 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 55782814 . T G 53.3 . DP=16;AF1=1;CI95=0.5,1;DP4=0,0,1,4;MQ=48 PL:DP:SP:GT:GQ 86,15,0:5:0:1/1:75 +chr11 55798152 . G A 71.6 . DP=36;AF1=1;CI95=0.5,1;DP4=1,0,3,8;MQ=49;PV4=0.33,0.087,0.33,1 PL:DP:SP:GT:GQ 104,11,0:12:0:1/1:66 +chr11 55798664 . T G 15.1 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=4,2,0,5;MQ=48;PV4=0.061,0.038,0.041,1 PL:DP:SP:GT:GQ 45,0,150:11:12:0/1:48 +chr11 55826767 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 55860780 . G A 76.3 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,3,2;MQ=47 PL:DP:SP:GT:GQ 109,15,0:5:0:1/1:75 +chr11 55872543 . A C 24 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=4,4,7,0;MQ=49;PV4=0.077,0.017,0.016,1 PL:DP:SP:GT:GQ 54,0,180:15:11:0/1:57 +chr11 55873024 . A G 99 . DP=15;AF1=1;CI95=0.5,1;DP4=1,0,2,4;MQ=45;PV4=0.43,1,0.031,1 PL:DP:SP:GT:GQ 152,5,0:7:0:1/1:46 +chr11 55904892 . C A,T 5.29 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=48 PL:DP:SP:GT:GQ 50,21,34,15,0,34:3:0:1/1:49 +chr11 55935131 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 55944048 . G C 45 . DP=7;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,5,0;MQ=47;PV4=1,0.054,1,0.43 PL:DP:SP:GT:GQ 75,0,28:6:0:0/1:31 +chr11 55947632 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 55975942 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 55978537 . TC TCGCC 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 56000403 . C G 99 . DP=27;AF1=0.5263;CI95=0.5,1;DP4=1,1,10,7;MQ=47;PV4=1,0.089,0.019,1 PL:DP:SP:GT:GQ 199,0,10:19:0:0/1:13 +chr11 56003007 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 56018697 . TA TATAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 56025265 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 56037732 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 56043656 . G GCATT 5.08 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.39 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr11 56043702 . G C 14.8 . DP=9;AF1=0.5939;CI95=0.5,1;DP4=0,1,1,1;MQ=47;PV4=1,1,0.061,1 PL:DP:SP:GT:GQ 44,0,5:3:0:0/1:7 +chr11 56058197 . G A 15.1 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=13,0,5,1;MQ=50;PV4=0.32,4.7e-07,0.0087,1 PL:DP:SP:GT:GQ 45,0,226:19:0:0/1:48 +chr11 56064394 . A C 3.01 . DP=6;AF1=0.4997;CI95=0.5,0.5;DP4=1,2,2,0;MQ=49;PV4=0.4,0.25,0.056,1 PL:DP:SP:GT:GQ 30,0,79:5:4:0/1:33 +chr11 56086147 . T G 99 . DP=41;AF1=1;CI95=1,1;DP4=0,0,17,18;MQ=46 PL:DP:SP:GT:GQ 255,105,0:35:0:1/1:99 +chr11 56086677 . G A 5.46 . DP=9;AF1=0.4999;CI95=0.5,0.5;DP4=1,3,0,2;MQ=48;PV4=1,0.31,0.24,1 PL:DP:SP:GT:GQ 34,0,97:6:0:0/1:37 +chr11 56101006 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 56102653 . A C 32 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=46 PL:DP:SP:GT:GQ 64,9,0:3:0:1/1:63 +chr11 56113516 . T C 99 . DP=11;AF1=1;CI95=1,1;DP4=0,0,6,3;MQ=43 PL:DP:SP:GT:GQ 255,27,0:9:0:1/1:99 +chr11 56113575 . A G 99 . DP=47;AF1=0.5;CI95=0.5,0.5;DP4=15,12,9,4;MQ=49;PV4=0.5,8.7e-08,2.3e-16,1 PL:DP:SP:GT:GQ 174,0,255:40:3:0/1:99 +chr11 56128524 . C T 66.1 . DP=37;AF1=1;CI95=1,1;DP4=0,0,2,5;MQ=49 PL:DP:SP:GT:GQ 99,21,0:7:0:1/1:84 +chr11 56128679 . A T 7.8 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,3;MQ=49;PV4=1,1,0.022,0.17 PL:DP:SP:GT:GQ 37,0,71:9:0:0/1:40 +chr11 56215075 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 56217102 . G C 16.2 . DP=7;AF1=0.508;CI95=0.5,0.5;DP4=0,1,0,3;MQ=44;PV4=1,0.17,0.11,1 PL:DP:SP:GT:GQ 46,0,15:4:0:0/1:18 +chr11 56226919 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 56237161 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 56237577 . T A 30 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=4,5,0,8;MQ=49;PV4=0.082,0.0089,0.039,1 PL:DP:SP:GT:GQ 60,0,190:17:11:0/1:63 +chr11 56246154 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 56268383 . A G 11.3 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,2;MQ=46;PV4=1,0.28,0.069,0.21 PL:DP:SP:GT:GQ 41,0,80:5:0:0/1:44 +chr11 56268553 . A ACTCT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 56289213 . T G 26 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=47 PL:DP:SP:GT:GQ 58,9,0:3:0:1/1:63 +chr11 56342266 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 56382025 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 56436645 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 56455997 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 56463714 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 56468040 . T TNNNNNNNN 84.4 . INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=50 PL:DP:SP:GT:GQ 124,9,0:3:0:1/1:63 +chr11 56468368 . C T 11.3 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=4,7,0,4;MQ=48;PV4=0.52,0.00013,0.0022,0.21 PL:DP:SP:GT:GQ 41,0,255:15:3:0/1:44 +chr11 56468403 . G A 99 . DP=44;AF1=0.5;CI95=0.5,0.5;DP4=11,13,8,10;MQ=48;PV4=1,8.8e-06,2.7e-08,1 PL:DP:SP:GT:GQ 255,0,255:42:0:0/1:99 +chr11 56468452 . A C 99 . DP=66;AF1=0.5;CI95=0.5,0.5;DP4=13,25,11,9;MQ=49;PV4=0.16,2.3e-15,8.6e-06,1 PL:DP:SP:GT:GQ 139,0,255:58:8:0/1:99 +chr11 56468637 . C T 99 . DP=51;AF1=0.5;CI95=0.5,0.5;DP4=10,19,4,10;MQ=49;PV4=1,8.1e-11,5.2e-07,0.28 PL:DP:SP:GT:GQ 146,0,255:43:0:0/1:99 +chr11 56486985 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 56489517 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 56507816 . A C 37 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=3,1,1,7;MQ=45;PV4=0.067,7.9e-06,0.15,1 PL:DP:SP:GT:GQ 67,0,126:12:12:0/1:70 +chr11 56507838 . A G 99 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=6,2,2,8;MQ=43;PV4=0.054,0.024,0.0013,1 PL:DP:SP:GT:GQ 195,0,226:18:13:0/1:99 +chr11 56507852 . A G 66 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=5,2,0,7;MQ=43;PV4=0.021,0.091,0.00024,0.038 PL:DP:SP:GT:GQ 96,0,201:14:17:0/1:99 +chr11 56508013 . A G 47 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=0,10,6,1;MQ=42;PV4=0.00057,0.35,6.3e-06,1 PL:DP:SP:GT:GQ 77,0,146:17:32:0/1:80 +chr11 56508220 . TGAGAG TGAGAGAGAG 52.2 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 91,6,0:2:0:1/1:49 +chr11 56510672 . T C,G 20 . DP=26;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=48 PL:DP:SP:GT:GQ 63,20,49,11,0,49:4:0:1/1:63 +chr11 56511365 . T C 4.13 . DP=9;AF1=0.4999;CI95=0.5,0.5;DP4=0,3,0,2;MQ=48;PV4=1,1,0,0.17 PL:DP:SP:GT:GQ 32,0,35:5:0:0/1:33 +chr11 56512453 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 56518197 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 56534090 . T TGCAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 56536623 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 56536791 . AG AGG 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 56543918 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 56559522 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 56584888 . a aGAGTGAGT 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 56585789 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 56686161 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 56736165 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 56756664 . G A 52 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=4,6,2,3;MQ=49;PV4=1,0.0021,0.00023,0.13 PL:DP:SP:GT:GQ 82,0,255:15:0:0/1:85 +chr11 56790670 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 56803460 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 56843077 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 56876717 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 56908186 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 56925641 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 56931667 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 56949844 . AC ACGCC 3.25 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=2,1,0,1;MQ=50;PV4=1,1,1,0.27 PL:DP:SP:GT:GQ 38,0,100:4:0:0/1:41 +chr11 56950264 . A G 17.2 . DP=4;AF1=0.5128;CI95=0.5,0.5;DP4=0,1,0,2;MQ=47;PV4=1,1,0.19,1 PL:DP:SP:GT:GQ 47,0,13:3:0:0/1:16 +chr11 56983577 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 56985276 . A G 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 56994919 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 56999643 . T G 10.2 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=47 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr11 57004344 . G T 99 . DP=37;AF1=1;CI95=1,1;DP4=0,1,6,14;MQ=48;PV4=1,1,0.1,1 PL:DP:SP:GT:GQ 199,41,0:21:0:1/1:99 +chr11 57021390 . c cGCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 57029051 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 57035139 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 57070063 . G C 6.2 . DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=49;PV4=1,0.03,0.048,1 PL:DP:SP:GT:GQ 35,0,58:4:0:0/1:38 +chr11 57077464 . T C 3.01 . DP=86;AF1=0.4998;CI95=0.5,0.5;DP4=1,1,1,1;MQ=50;PV4=1,0.11,0.21,1 PL:DP:SP:GT:GQ 30,0,38:4:0:0/1:32 +chr11 57078115 . C G 5.46 . DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,2;MQ=49;PV4=1,0.038,0.12,1 PL:DP:SP:GT:GQ 34,0,52:4:0:0/1:37 +chr11 57085307 . C A 9.52 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=1,9,4,0;MQ=46;PV4=0.005,1.8e-05,1,0.34 PL:DP:SP:GT:GQ 39,0,231:14:23:0/1:42 +chr11 57085316 . T A 99 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=3,4,4,5;MQ=47;PV4=1,0.025,1.2e-07,1 PL:DP:SP:GT:GQ 201,0,203:16:0:0/1:99 +chr11 57086678 . T TTATAATG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 57089318 . G A 5.46 . DP=17;AF1=0.4999;CI95=0.5,0.5;DP4=3,2,4,0;MQ=49;PV4=0.44,0.16,0.0062,0.31 PL:DP:SP:GT:GQ 34,0,115:9:4:0/1:37 +chr11 57091438 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 57093820 . A C 11.3 . DP=15;AF1=0.5001;CI95=0.5,0.5;DP4=2,0,3,0;MQ=48;PV4=1,0.21,0.25,1 PL:DP:SP:GT:GQ 41,0,32:5:0:0/1:34 +chr11 57094841 . TT TTTCTCT 7.46 . INDEL;DP=6;AF1=0.5163;CI95=0.5,1;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,12:2:0:0/1:15 +chr11 57100489 . T A 6.98 . DP=13;AF1=0.4999;CI95=0.5,0.5;DP4=1,5,3,0;MQ=49;PV4=0.048,3.4e-06,0.014,1 PL:DP:SP:GT:GQ 36,0,206:9:13:0/1:39 +chr11 57118385 . C T 66 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=0,8,6,3;MQ=48;PV4=0.009,0.069,0.0065,1 PL:DP:SP:GT:GQ 96,0,119:17:20:0/1:99 +chr11 57135663 . AGGG AGGGG 40.4 . INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 80,9,0:3:0:1/1:63 +chr11 57137016 . TCAC TCACAC 4.42 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 57137585 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 57147016 . A G 35.5 . DP=42;AF1=0.9998;CI95=0.5,1;DP4=0,1,1,8;MQ=50;PV4=1,0.0013,1,1 PL:DP:SP:GT:GQ 65,2,0:10:0:1/1:37 +chr11 57148175 . A G 99 . DP=14;AF1=1;CI95=1,1;DP4=0,0,0,13;MQ=46 PL:DP:SP:GT:GQ 164,39,0:13:0:1/1:99 +chr11 57148418 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 57152593 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 57155001 . G A 54.1 . DP=27;AF1=1;CI95=0.5,1;DP4=0,0,1,5;MQ=49 PL:DP:SP:GT:GQ 87,18,0:6:0:1/1:90 +chr11 57155288 . T C 28.1 . DP=3;AF1=0.505;CI95=0.5,0.5;DP4=1,0,0,2;MQ=45;PV4=0.33,1,0.094,1 PL:DP:SP:GT:GQ 58,0,17:3:0:0/1:20 +chr11 57171872 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 57179034 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 57184218 . C T 71.3 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=46 PL:DP:SP:GT:GQ 104,15,0:5:0:1/1:75 +chr11 57215272 . a aAGTTT 12.7 . INDEL;DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 57241215 . G GT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 57243588 . A G 99 . DP=16;AF1=1;CI95=1,1;DP4=0,0,15,0;MQ=43 PL:DP:SP:GT:GQ 226,45,0:15:0:1/1:99 +chr11 57256537 . GGCC G 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,0.00019,1,0.25 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr11 57258899 . C T 6.2 . DP=9;AF1=0.4999;CI95=0.5,0.5;DP4=0,4,0,3;MQ=49;PV4=1,0.27,0.42,1 PL:DP:SP:GT:GQ 35,0,66:7:0:0/1:38 +chr11 57303226 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 57311258 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 57315663 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 57319150 . AA AAAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 57321811 . T G 23.5 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=49 PL:DP:SP:GT:GQ 56,12,0:4:0:1/1:72 +chr11 57327750 . G C 19.2 . DP=7;AF1=0.5163;CI95=0.5,1;DP4=1,0,3,0;MQ=49;PV4=1,1,0,1 PL:DP:SP:GT:GQ 49,0,12:4:0:0/1:15 +chr11 57344024 . G T 7.62 . DP=29;AF1=0.6242;CI95=0.5,1;DP4=0,1,2,1;MQ=37;PV4=1,0.22,1,1 PL:DP:SP:GT:GQ 36,0,4:4:0:0/1:6 +chr11 57348710 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 57369711 . G T 3.01 . DP=13;AF1=0.4997;CI95=0.5,0.5;DP4=0,5,0,3;MQ=44;PV4=1,0.02,0.0097,1 PL:DP:SP:GT:GQ 30,0,136:8:0:0/1:33 +chr11 57369716 . G A 24.1 . DP=11;AF1=0.9966;CI95=0.5,1;DP4=0,1,0,5;MQ=41;PV4=1,1,0.24,0.43 PL:DP:SP:GT:GQ 53,1,0:6:0:1/1:23 +chr11 57413415 . AGGGG AGG 3.25 . INDEL;DP=9;AF1=0.5;CI95=0.5,0.5;DP4=3,0,2,0;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,39:5:0:0/1:38 +chr11 57413943 . C G 50.5 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=47 PL:DP:SP:GT:GQ 83,12,0:4:0:1/1:72 +chr11 57424861 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 57429515 . g gACGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 57432560 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 57456244 . C T 90.1 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=45 PL:DP:SP:GT:GQ 123,18,0:6:0:1/1:90 +chr11 57463500 . T C 4.33 . DP=27;AF1=0.5429;CI95=0.5,1;DP4=0,1,3,0;MQ=50;PV4=0.25,0.34,0.33,1 PL:DP:SP:GT:GQ 32,0,8:4:0:0/1:11 +chr11 57480066 . AG AGGG 3.25 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=1,2,1,0;MQ=50;PV4=1,1,1,0.38 PL:DP:SP:GT:GQ 38,0,91:4:0:0/1:41 +chr11 57480300 . T G 9.31 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr11 57480416 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 57502936 . gc gCTTCAc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 57505472 . G A 8.65 . DP=20;AF1=0.5003;CI95=0.5,0.5;DP4=0,3,0,4;MQ=48;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,29:7:0:0/1:31 +chr11 57507590 . T G 3.01 . DP=4;AF1=0.4997;CI95=0.5,0.5;DP4=2,0,0,2;MQ=49;PV4=0.33,0.006,0.21,0.25 PL:DP:SP:GT:GQ 30,0,80:4:5:0/1:33 +chr11 57512662 . CCTAAGTT C 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 57531056 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 57549336 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 57566899 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 57590857 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 57602677 . T TAG 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 57630060 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 57637980 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 57642373 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 57671820 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 57689839 . a aCTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 57715576 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 57791174 . t tGACG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 57798723 . A G 75.1 . DP=58;AF1=1;CI95=0.5,1;DP4=0,1,3,7;MQ=49;PV4=1,0.084,0.32,1 PL:DP:SP:GT:GQ 106,5,0:11:0:1/1:46 +chr11 57798942 . A G 99 . DP=49;AF1=1;CI95=1,1;DP4=1,0,22,12;MQ=48;PV4=1,1,0.18,1 PL:DP:SP:GT:GQ 255,83,0:35:0:1/1:99 +chr11 57812112 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 57823262 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 57830550 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 57836248 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 57859278 . t tCTATG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 57870204 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 57888678 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 57909435 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 57930226 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 57934090 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 57940600 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 57956663 . A C 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 57958208 . G C 46 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=4,5,9,0;MQ=47;PV4=0.029,0.0095,0.1,1 PL:DP:SP:GT:GQ 76,0,196:18:15:0/1:79 +chr11 57958775 . C T 56.5 . DP=52;AF1=0.5718;CI95=0.5,1;DP4=0,1,5,2;MQ=49;PV4=0.37,0.11,0.3,1 PL:DP:SP:GT:GQ 86,0,6:8:0:0/1:8 +chr11 57959741 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 57970918 . C A 36 . DP=8;AF1=0.5003;CI95=0.5,0.5;DP4=1,0,1,3;MQ=48;PV4=0.4,0.019,0.29,0.24 PL:DP:SP:GT:GQ 66,0,29:5:0:0/1:32 +chr11 57971195 . G A 25 . DP=39;AF1=0.5;CI95=0.5,0.5;DP4=1,1,2,3;MQ=49;PV4=1,0.07,0.19,1 PL:DP:SP:GT:GQ 55,0,45:7:0:0/1:48 +chr11 57971201 . G A 22.5 . DP=42;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=49 PL:DP:SP:GT:GQ 55,12,0:4:0:1/1:72 +chr11 57971695 . C A 17.8 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:DP:SP:GT:GQ 49,6,0:2:0:1/1:49 +chr11 57971698 . T G 6.36 . DP=11;AF1=0.5262;CI95=0.5,1;DP4=0,1,0,3;MQ=43;PV4=1,1,0.36,0.38 PL:DP:SP:GT:GQ 35,0,10:4:0:0/1:13 +chr11 57971699 . T A 3.55 . DP=11;AF1=0.5008;CI95=0.5,0.5;DP4=0,2,0,3;MQ=46;PV4=1,1,0.17,0.35 PL:DP:SP:GT:GQ 31,0,24:5:0:0/1:26 +chr11 57982171 . A C 5.46 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=48;PV4=1,0.36,0.042,1 PL:DP:SP:GT:GQ 34,0,37:6:0:0/1:35 +chr11 57982229 . A G 99 . DP=16;AF1=1;CI95=1,1;DP4=0,0,6,2;MQ=48 PL:DP:SP:GT:GQ 138,24,0:8:0:1/1:96 +chr11 57982584 . T C 3.02 . DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 57982620 . A G 99 . DP=30;AF1=1;CI95=1,1;DP4=1,0,10,18;MQ=45;PV4=0.38,1.4e-06,0.16,0.37 PL:DP:SP:GT:GQ 243,37,0:29:0:1/1:99 +chr11 57982896 . G T 25.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=44 PL:DP:SP:GT:GQ 57,6,0:2:0:1/1:49 +chr11 57983194 . A G 11.4 . DP=10;AF1=0.5063;CI95=0.5,0.5;DP4=0,1,0,4;MQ=50;PV4=1,0.023,0.34,1 PL:DP:SP:GT:GQ 41,0,16:5:0:0/1:19 +chr11 57995323 . T A 3.54 . DP=9;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,3,0;MQ=48;PV4=1,0.44,0.11,1 PL:DP:SP:GT:GQ 31,0,33:5:0:0/1:32 +chr11 57996312 . C G 42.5 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=45 PL:DP:SP:GT:GQ 75,12,0:4:0:1/1:72 +chr11 57996803 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 58000828 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 58024718 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 58025374 . ctgt cTAGtgt 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 58033768 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 58034543 . C T 55.3 . DP=37;AF1=1;CI95=0.5,1;DP4=0,0,3,2;MQ=48 PL:DP:SP:GT:GQ 88,15,0:5:0:1/1:75 +chr11 58059854 . G T 3.01 . DP=9;AF1=0.4997;CI95=0.5,0.5;DP4=0,2,2,0;MQ=49;PV4=0.33,0.085,0.21,1 PL:DP:SP:GT:GQ 30,0,68:4:5:0/1:33 +chr11 58065391 . ctct cTCTtct 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 58088558 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 58101673 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 58111513 . T C 83.1 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,5,1;MQ=46 PL:DP:SP:GT:GQ 116,18,0:6:0:1/1:90 +chr11 58112130 . C A 51.1 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=48 PL:DP:SP:GT:GQ 84,18,0:6:0:1/1:90 +chr11 58125620 . T C 99 . DP=26;AF1=1;CI95=1,1;DP4=0,0,18,2;MQ=45 PL:DP:SP:GT:GQ 241,60,0:20:0:1/1:99 +chr11 58174398 . CA CAGGAGGA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 58176746 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 58195363 . gact gACTCact 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 58207204 . A G 94.2 . DP=36;AF1=1;CI95=0.5,1;DP4=1,0,4,6;MQ=49;PV4=0.45,0.18,0.19,1 PL:DP:SP:GT:GQ 126,8,0:11:0:1/1:56 +chr11 58211603 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 58280994 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 58284244 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 58290912 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 58295748 . tca t 99 . INDEL;DP=23;AF1=1;CI95=1,1;DP4=0,0,0,19;MQ=50 PL:DP:SP:GT:GQ 247,57,0:19:0:1/1:99 +chr11 58311702 . T TAGAACCCTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 58318618 . C G 3.54 . DP=33;AF1=0.4998;CI95=0.5,0.5;DP4=0,3,0,3;MQ=50;PV4=1,0.23,1,1 PL:DP:SP:GT:GQ 31,0,41:6:0:0/1:34 +chr11 58318619 . C G 16.5 . DP=33;AF1=0.5554;CI95=0.5,1;DP4=0,1,0,4;MQ=49;PV4=1,0.3,0.27,1 PL:DP:SP:GT:GQ 46,0,7:5:0:0/1:10 +chr11 58320103 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 58334883 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 58341248 . A AT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 58343429 . A AAATTCCTGGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 58347355 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 58371756 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 58379663 . CGTGTGTGTGTGTGTGTGT CGTGTGTGTGTGTGTGT 58.5 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=1,0,3,0;MQ=50;PV4=1,0.016,1,1 PL:DP:SP:GT:GQ 96,0,38:4:0:0/1:41 +chr11 58379977 . T TTTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 58391946 . G A 16.1 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=6,8,5,0;MQ=49;PV4=0.045,0.16,7.7e-11,1 PL:DP:SP:GT:GQ 46,0,246:19:14:0/1:49 +chr11 58443685 . t tACTGTGAATCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 58477868 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 58478084 . T C 99 . DP=41;AF1=1;CI95=0.5,1;DP4=1,0,3,7;MQ=47;PV4=0.36,0.38,0.065,1 PL:DP:SP:GT:GQ 142,7,0:11:0:1/1:57 +chr11 58489229 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 58491921 . A T 99 . DP=29;AF1=1;CI95=1,1;DP4=0,1,5,10;MQ=48;PV4=1,1,0.094,1 PL:DP:SP:GT:GQ 188,30,0:16:0:1/1:99 +chr11 58533882 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 58552503 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 58561893 . c cAATA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 58565343 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 58565354 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 58577207 . AA AACGTGGAGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 58604712 . T C 99 . DP=33;AF1=1;CI95=1,1;DP4=0,0,19,4;MQ=46 PL:DP:SP:GT:GQ 255,69,0:23:0:1/1:99 +chr11 58605834 . C T 13.3 . DP=12;AF1=0.5063;CI95=0.5,0.5;DP4=0,1,0,3;MQ=46;PV4=1,0.059,0,1 PL:DP:SP:GT:GQ 43,0,16:4:0:0/1:19 +chr11 58619699 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 58647807 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 58663597 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 58681248 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 58737320 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 58761957 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 58799944 . c cGT 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 58817570 . T G 7.8 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 58832515 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 58867539 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 58869868 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 58916421 . T G 4.77 . DP=13;AF1=0.4999;CI95=0.5,0.5;DP4=0,5,0,3;MQ=48;PV4=1,0.18,0.46,0.43 PL:DP:SP:GT:GQ 33,0,77:8:0:0/1:36 +chr11 58919689 . A C 3.54 . DP=40;AF1=0.4998;CI95=0.5,0.5;DP4=0,27,8,0;MQ=49;PV4=4.2e-08,8e-11,3e-08,1 PL:DP:SP:GT:GQ 31,0,238:35:74:0/1:34 +chr11 58923458 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 58933677 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 58967353 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 58973199 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 58978695 . A C 11.3 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=4,1,0,3;MQ=49;PV4=0.14,0.19,0.015,1 PL:DP:SP:GT:GQ 41,0,119:8:8:0/1:44 +chr11 58997902 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 59015653 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 59025435 . A G 99 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=43 PL:DP:SP:GT:GQ 168,18,0:6:0:1/1:90 +chr11 59033756 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 59045423 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 59055059 . T G 34.5 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=47 PL:DP:SP:GT:GQ 67,12,0:4:0:1/1:72 +chr11 59098590 . t tTTAGATTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 59101342 . AG AGGGG 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 59109719 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 59132798 . G C 99 . DP=25;AF1=1;CI95=1,1;DP4=1,0,3,16;MQ=44;PV4=0.2,1,1,0.086 PL:DP:SP:GT:GQ 255,20,0:20:0:1/1:80 +chr11 59132882 . A G 10.2 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr11 59181462 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 59189405 . T C 99 . DP=23;AF1=1;CI95=1,1;DP4=0,0,17,0;MQ=46 PL:DP:SP:GT:GQ 173,51,0:17:0:1/1:99 +chr11 59202914 . C A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 59211188 . G A 15.2 . DP=26;AF1=0.508;CI95=0.5,0.5;DP4=0,1,0,3;MQ=49;PV4=1,0.036,0.065,1 PL:DP:SP:GT:GQ 45,0,15:4:0:0/1:18 +chr11 59211263 . AC ACCC 64.5 . INDEL;DP=25;AF1=0.5;CI95=0.5,0.5;DP4=4,0,5,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 102,0,58:9:0:0/1:61 +chr11 59211264 . C CCG 20.5 . INDEL;DP=25;AF1=0.5;CI95=0.5,0.5;DP4=2,0,3,0;MQ=49;PV4=1,1,0.25,1 PL:DP:SP:GT:GQ 58,0,44:5:0:0/1:47 +chr11 59211271 . A T 17.1 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=2,4,4,0;MQ=49;PV4=0.076,0.071,0.06,0.13 PL:DP:SP:GT:GQ 47,0,153:10:11:0/1:50 +chr11 59224720 . A G 99 . DP=54;AF1=1;CI95=0.5,1;DP4=2,0,7,8;MQ=49;PV4=0.47,0.12,0.26,1 PL:DP:SP:GT:GQ 132,5,0:17:3:1/1:46 +chr11 59237349 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 59259831 . T C 12 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr11 59271637 . T C 19.2 . DP=50;AF1=0.7303;CI95=0.5,1;DP4=0,1,3,0;MQ=49;PV4=0.25,1,0.11,1 PL:DP:SP:GT:GQ 48,0,2:4:0:0/1:3 +chr11 59277726 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 59283171 . C G 30 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=1,5,0,3;MQ=45;PV4=1,1,0.033,1 PL:DP:SP:GT:GQ 60,0,109:9:0:0/1:63 +chr11 59304739 . C A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 59305606 . T A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 59326951 . C G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 59345601 . A T 6.2 . DP=19;AF1=0.4999;CI95=0.5,0.5;DP4=5,0,3,0;MQ=49;PV4=1,0.19,0.21,0.46 PL:DP:SP:GT:GQ 35,0,76:8:0:0/1:38 +chr11 59345854 . G C 4.13 . DP=25;AF1=0.4998;CI95=0.5,0.5;DP4=0,9,0,4;MQ=49;PV4=1,0.073,0.28,0.15 PL:DP:SP:GT:GQ 32,0,108:13:0:0/1:35 +chr11 59346519 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 59347728 . A C 7.8 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,4;MQ=48;PV4=1,0.44,0.063,1 PL:DP:SP:GT:GQ 37,0,79:12:0:0/1:40 +chr11 59348782 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 59361154 . T G 21 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=6,2,0,5;MQ=48;PV4=0.021,0.0066,1,1 PL:DP:SP:GT:GQ 51,0,194:13:17:0/1:54 +chr11 59361264 . GTG GTGCACACTG 7.36 . INDEL;DP=2;AF1=0.5016;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,22:2:0:0/1:25 +chr11 59405524 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 59448399 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 59494875 . G GTCGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 59532735 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 59543288 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 59559591 . T G 46 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,2,5,0;MQ=48;PV4=0.048,1.6e-06,0.011,1 PL:DP:SP:GT:GQ 76,0,71:7:13:0/1:73 +chr11 59559997 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 59575821 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 59577373 . C A 12.3 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=5,3,0,6;MQ=49;PV4=0.031,0.0011,0.13,1 PL:DP:SP:GT:GQ 42,0,219:14:15:0/1:45 +chr11 59586639 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 59588298 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 59591045 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 59599374 . t tGGAGTGTC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 59625110 . t tGGGTGA 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 59626571 . A C 47 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=2,13,9,0;MQ=48;PV4=4.2e-05,0.00075,1.2e-05,0.37 PL:DP:SP:GT:GQ 77,0,255:24:44:0/1:80 +chr11 59645389 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 59690279 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 59735313 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 59743548 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 59778387 . C CTCT 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 59795665 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 59813497 . C A 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 59814623 . A G 16.1 . DP=10;AF1=0.5008;CI95=0.5,0.5;DP4=0,2,0,4;MQ=48;PV4=1,0.21,0.12,1 PL:DP:SP:GT:GQ 46,0,25:6:0:0/1:28 +chr11 59824895 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 59828576 . A C 6.98 . DP=17;AF1=0.4999;CI95=0.5,0.5;DP4=5,0,3,0;MQ=47;PV4=1,0.23,0.029,0.41 PL:DP:SP:GT:GQ 36,0,76:8:0:0/1:39 +chr11 59828581 . G T 26 . DP=15;AF1=0.5001;CI95=0.5,0.5;DP4=3,0,4,0;MQ=47;PV4=1,1,0.062,0.01 PL:DP:SP:GT:GQ 56,0,36:7:0:0/1:39 +chr11 59830103 . A G 99 . DP=48;AF1=1;CI95=1,1;DP4=0,0,2,38;MQ=49 PL:DP:SP:GT:GQ 155,120,0:40:0:1/1:99 +chr11 59837721 . TTA TTATGAAAATA 13.7 . INDEL;DP=16;AF1=0.5;CI95=0.5,0.5;DP4=2,10,0,2;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 51,0,255:14:0:0/1:54 +chr11 59856263 . G C 7.25 . DP=11;AF1=0.543;CI95=0.5,1;DP4=1,0,0,4;MQ=49;PV4=0.2,0.26,0.3,1 PL:DP:SP:GT:GQ 36,0,8:5:0:0/1:11 +chr11 59858036 . C G 35 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,4;MQ=48;PV4=1,0.034,0.16,1 PL:DP:SP:GT:GQ 65,0,66:6:0:0/1:65 +chr11 59880343 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 59917408 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 59945564 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 59947252 . C T 99 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=9,0,14,1;MQ=47;PV4=1,7.6e-06,0.00013,1 PL:DP:SP:GT:GQ 155,0,180:24:0:0/1:99 +chr11 59947635 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 59952176 . C CTGCGCACCCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 59954254 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 59960341 . aga aGACGAGATGCTga 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 59989053 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 59992686 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 59997335 . T C 22 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 54,9,0:3:0:1/1:63 +chr11 60020176 . TGAACA T 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 60035232 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 60054806 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 60059509 . CCCACC CCCACCACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 60073702 . A T 99 . DP=14;AF1=1;CI95=1,1;DP4=0,0,0,12;MQ=47 PL:DP:SP:GT:GQ 141,36,0:12:0:1/1:99 +chr11 60075614 . C T 4.13 . DP=14;AF1=0.4998;CI95=0.5,0.5;DP4=2,3,0,4;MQ=48;PV4=0.44,0.13,0.25,0.41 PL:DP:SP:GT:GQ 32,0,110:9:4:0/1:35 +chr11 60102366 . A C 13.2 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=2,1,3,0;MQ=49;PV4=1,1,0.013,1 PL:DP:SP:GT:GQ 43,0,40:6:0:0/1:41 +chr11 60152563 . T A 99 . DP=22;AF1=1;CI95=1,1;DP4=0,0,13,4;MQ=47 PL:DP:SP:GT:GQ 194,51,0:17:0:1/1:99 +chr11 60152584 . G A 52 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=8,9,3,6;MQ=49;PV4=0.68,2.6e-11,0.00067,1 PL:DP:SP:GT:GQ 82,0,255:26:2:0/1:85 +chr11 60152681 . T C 20 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=4,0,1,5;MQ=49;PV4=0.048,0.0032,0.058,1 PL:DP:SP:GT:GQ 50,0,109:10:13:0/1:53 +chr11 60157107 . T G 54.2 . DP=18;AF1=1;CI95=0.5,1;DP4=0,1,0,14;MQ=49;PV4=1,0.026,1,0.43 PL:DP:SP:GT:GQ 87,16,0:15:0:1/1:80 +chr11 60164204 . G A 4.78 . DP=11;AF1=0.5024;CI95=0.5,0.5;DP4=0,1,1,1;MQ=48;PV4=1,0,0.26,1 PL:DP:SP:GT:GQ 33,0,20:3:0:0/1:23 +chr11 60165352 . ATT A 99 . INDEL;DP=36;AF1=1;CI95=1,1;DP4=1,0,13,17;MQ=50;PV4=0.45,1,0.43,1 PL:DP:SP:GT:GQ 255,65,0:31:0:1/1:99 +chr11 60208749 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 60222555 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 60224978 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 60231733 . C CAGA 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,0.31,1,0.097 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr11 60233614 . T C 35 . DP=41;AF1=0.5;CI95=0.5,0.5;DP4=8,14,12,0;MQ=48;PV4=0.00024,9.3e-05,0.014,0.49 PL:DP:SP:GT:GQ 65,0,255:34:36:0/1:68 +chr11 60236038 . A G 4.77 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,44:2:0:0/1:36 +chr11 60236513 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 60255478 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 60264755 . G A 95 . DP=24;AF1=1;CI95=1,1;DP4=0,0,19,0;MQ=49 PL:DP:SP:GT:GQ 128,57,0:19:0:1/1:99 +chr11 60264947 . C T 99 . DP=52;AF1=1;CI95=1,1;DP4=0,0,16,24;MQ=45 PL:DP:SP:GT:GQ 255,120,0:40:0:1/1:99 +chr11 60265002 . C T 55 . DP=40;AF1=0.5;CI95=0.5,0.5;DP4=8,11,13,5;MQ=50;PV4=0.099,4.1e-20,0.12,1 PL:DP:SP:GT:GQ 85,0,255:37:10:0/1:88 +chr11 60265164 . G A 88.1 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=45 PL:DP:SP:GT:GQ 121,18,0:6:0:1/1:90 +chr11 60268679 . G C 99 . DP=33;AF1=1;CI95=1,1;DP4=0,0,5,26;MQ=49 PL:DP:SP:GT:GQ 213,93,0:31:0:1/1:99 +chr11 60268736 . C A 75 . DP=19;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=48 PL:DP:SP:GT:GQ 108,24,0:8:0:1/1:96 +chr11 60274640 . T C 31.5 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=49 PL:DP:SP:GT:GQ 64,12,0:4:0:1/1:72 +chr11 60282773 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 60285575 . A G 99 . DP=27;AF1=1;CI95=0.5,1;DP4=1,1,14,6;MQ=47;PV4=1,0.33,0.15,1 PL:DP:SP:GT:GQ 185,14,0:22:0:1/1:70 +chr11 60289988 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 60291413 . C T 7.8 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=4,6,3,1;MQ=50;PV4=0.56,1.1e-05,0.0063,1 PL:DP:SP:GT:GQ 37,0,255:14:3:0/1:40 +chr11 60309853 . T C 6.98 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,44:2:0:0/1:38 +chr11 60309947 . A T 30.5 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=49 PL:DP:SP:GT:GQ 63,12,0:4:0:1/1:72 +chr11 60326626 . AAT AATGAGAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 60387532 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 60404843 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 60440931 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 60443238 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 60463160 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 60467096 . T A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 60472758 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 60474882 . CA CAA 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 60478147 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 60481149 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 60538706 . G A 10.4 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=5,0,3,0;MQ=48;PV4=1,0.026,0.23,0.13 PL:DP:SP:GT:GQ 40,0,104:8:0:0/1:43 +chr11 60538716 . G C 3.54 . DP=9;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,3,0;MQ=49;PV4=1,0.00031,0.0062,1 PL:DP:SP:GT:GQ 31,0,78:5:0:0/1:34 +chr11 60540877 . C G 5.46 . DP=15;AF1=0.4999;CI95=0.5,0.5;DP4=7,2,0,3;MQ=48;PV4=0.045,0.098,0.039,0.26 PL:DP:SP:GT:GQ 34,0,201:12:13:0/1:37 +chr11 60552650 . T A 5.46 . DP=2;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,32:2:0:0/1:33 +chr11 60557981 . AG AGCGCGG 3.25 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=2,1,0,1;MQ=50;PV4=1,1,1,0.41 PL:DP:SP:GT:GQ 38,0,98:4:0:0/1:41 +chr11 60559805 . A G 83 . DP=41;AF1=1;CI95=1,1;DP4=1,1,4,29;MQ=49;PV4=0.27,0.00046,0.31,1 PL:DP:SP:GT:GQ 116,46,0:35:6:1/1:99 +chr11 60560478 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 60561613 . C T 72 . DP=40;AF1=0.5;CI95=0.5,0.5;DP4=2,22,1,13;MQ=49;PV4=1,5.3e-10,0.0003,1 PL:DP:SP:GT:GQ 102,0,255:38:0:0/1:99 +chr11 60563787 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 60566136 . TA T 17.3 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 56,6,0:2:0:1/1:49 +chr11 60567275 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 60567525 . CCTGGG C 7.35 . INDEL;DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,10,0,5;MQ=50;PV4=1,0.00049,1,1 PL:DP:SP:GT:GQ 44,0,213:15:0:0/1:47 +chr11 60586105 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 60609687 . GG GGACG 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=1,2,1,0;MQ=50;PV4=1,1,1,0.29 PL:DP:SP:GT:GQ 38,0,130:4:0:0/1:41 +chr11 60617646 . T C 85.1 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,2,4;MQ=48 PL:DP:SP:GT:GQ 118,18,0:6:0:1/1:90 +chr11 60623453 . A ATGAT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 60635091 . T C 17.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 49,6,0:2:0:1/1:49 +chr11 60638461 . C T 54 . DP=19;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=49 PL:DP:SP:GT:GQ 87,24,0:8:0:1/1:96 +chr11 60638470 . A G 24.2 . DP=21;AF1=0.7303;CI95=0.5,1;DP4=0,1,0,5;MQ=48;PV4=1,0.44,0.3,1 PL:DP:SP:GT:GQ 53,0,2:6:0:0/1:3 +chr11 60665270 . G C 4.79 . DP=5;AF1=0.5039;CI95=0.5,0.5;DP4=1,0,2,0;MQ=48;PV4=1,0.17,1,0.17 PL:DP:SP:GT:GQ 33,0,18:3:0:0/1:21 +chr11 60669829 . A C 16.1 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=48;PV4=1,1,0.062,1 PL:DP:SP:GT:GQ 46,0,47:6:0:0/1:46 +chr11 60670444 . A C 4.13 . DP=9;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 60676820 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 60690759 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 60696110 . GGCGCC GGCGCCGCGCC 5.08 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,1,0;MQ=49;PV4=0.33,1,1,1 PL:DP:SP:GT:GQ 41,0,56:3:0:0/1:44 +chr11 60705454 . A G,C 75.1 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,3,4;MQ=47 PL:DP:SP:GT:GQ 108,18,104,0,6,104:7:0:1/1:90 +chr11 60711016 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 60719532 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 60742231 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 60750004 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 60750347 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 60750553 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 60760427 . A AGGAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 60773131 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 60774970 . g gTTATC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 60776334 . A G 28 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=49 PL:DP:SP:GT:GQ 60,9,0:3:0:1/1:63 +chr11 60781375 . G A 3.54 . DP=5;AF1=0.4998;CI95=0.5,0.5;DP4=3,0,1,0;MQ=48;PV4=1,0.33,0.0049,1 PL:DP:SP:GT:GQ 31,0,108:4:0:0/1:34 +chr11 60781400 . T A 4.77 . DP=18;AF1=0.4999;CI95=0.5,0.5;DP4=5,3,3,0;MQ=49;PV4=0.49,0.046,0.0002,1 PL:DP:SP:GT:GQ 33,0,223:11:3:0/1:36 +chr11 60783135 . A G 99 . DP=42;AF1=1;CI95=1,1;DP4=1,1,32,3;MQ=49;PV4=0.21,0.013,0.29,1 PL:DP:SP:GT:GQ 146,51,0:37:7:1/1:99 +chr11 60789835 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 60791351 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 60793111 . t tCA 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 60834669 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 60859418 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 60871033 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 60882177 . agg aGGAGCAGgg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 60891310 . T C 14.1 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 46,9,0:3:0:1/1:63 +chr11 60892606 . A G 99 . DP=33;AF1=1;CI95=1,1;DP4=0,1,2,26;MQ=46;PV4=1,1,0.094,1 PL:DP:SP:GT:GQ 224,60,0:29:0:1/1:99 +chr11 60893235 . C T 24.1 . DP=34;AF1=0.5102;CI95=0.5,0.5;DP4=1,1,2,3;MQ=50;PV4=1,0.43,0.29,1 PL:DP:SP:GT:GQ 54,0,14:7:0:0/1:17 +chr11 60906224 . G A 14.2 . DP=60;AF1=0.5;CI95=0.5,0.5;DP4=16,11,10,0;MQ=49;PV4=0.018,0.0061,0.0015,1 PL:DP:SP:GT:GQ 44,0,255:37:17:0/1:47 +chr11 61015883 . T G 4.13 . DP=5;AF1=0.4998;CI95=0.5,0.5;DP4=1,1,0,2;MQ=46;PV4=1,0.079,0.0076,1 PL:DP:SP:GT:GQ 32,0,75:4:0:0/1:35 +chr11 61044381 . A T 4.39 . DP=2;AF1=0.5553;CI95=0.5,1;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,7:2:0:0/1:10 +chr11 61055734 . T G 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 61065907 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 61079617 . GCA G 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 61087981 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 61089013 . A ACAC 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,0.16 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr11 61108974 . G A 21.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=47 PL:DP:SP:GT:GQ 53,6,0:2:0:1/1:49 +chr11 61110169 . A C 78.2 . DP=53;AF1=1;CI95=0.5,1;DP4=0,1,2,7;MQ=49;PV4=1,1,0.26,1 PL:DP:SP:GT:GQ 111,16,0:10:0:1/1:80 +chr11 61117807 . C A 3.01 . DP=4;AF1=0.4997;CI95=0.5,0.5;DP4=1,1,2,0;MQ=49;PV4=1,0.1,1,0.3 PL:DP:SP:GT:GQ 30,0,70:4:0:0/1:33 +chr11 61120844 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 61121223 . G T 11.3 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=48;PV4=1,1,1,0.3 PL:DP:SP:GT:GQ 41,0,41:6:0:0/1:41 +chr11 61123661 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 61123965 . A G 25 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=48 PL:DP:SP:GT:GQ 57,9,0:3:0:1/1:63 +chr11 61179285 . G A 53.1 . DP=19;AF1=1;CI95=0.5,1;DP4=0,0,5,1;MQ=49 PL:DP:SP:GT:GQ 86,18,0:6:0:1/1:90 +chr11 61189043 . T C 27 . DP=43;AF1=0.5;CI95=0.5,0.5;DP4=4,26,7,1;MQ=49;PV4=0.00019,0.0074,5.2e-06,0.15 PL:DP:SP:GT:GQ 57,0,255:38:37:0/1:60 +chr11 61197592 . A C 30 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=8,0,5,0;MQ=49;PV4=1,1,0.0053,1 PL:DP:SP:GT:GQ 60,0,84:13:0:0/1:63 +chr11 61223542 . T TGCGGCGGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 61224249 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 61243844 . t tTAA 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 61252138 . A G 7.05 . DP=5;AF1=0.5101;CI95=0.5,0.5;DP4=0,1,2,0;MQ=48;PV4=0.33,1,0.11,1 PL:DP:SP:GT:GQ 36,0,14:3:0:0/1:17 +chr11 61252175 . T G 26 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,4;MQ=48;PV4=0.33,0.097,0.17,1 PL:DP:SP:GT:GQ 56,0,55:6:0:0/1:55 +chr11 61253973 . A G 83 . DP=13;AF1=1;CI95=1,1;DP4=0,0,8,1;MQ=49 PL:DP:SP:GT:GQ 116,27,0:9:0:1/1:99 +chr11 61280720 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 61311040 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 61314516 . T A 4.13 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,0,1;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,39:2:0:0/1:34 +chr11 61314836 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 61319000 . C G 18.8 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 50,6,0:2:0:1/1:49 +chr11 61321931 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 61323541 . G GCC 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr11 61363773 . T G 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 61374504 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 61378717 . C CTCCGTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 61379375 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 61404211 . A G 15.1 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,2,0;MQ=45;PV4=0.33,0.094,0.29,1 PL:DP:SP:GT:GQ 45,0,41:3:0:0/1:43 +chr11 61404698 . TT TTGT 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,37:2:0:0/1:39 +chr11 61418635 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 61472619 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 61487592 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 61490772 . G T 4.61 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 61496429 . G C 5.46 . DP=46;AF1=0.4999;CI95=0.5,0.5;DP4=10,15,5,0;MQ=49;PV4=0.042,0.039,7.3e-10,1 PL:DP:SP:GT:GQ 34,0,255:30:14:0/1:37 +chr11 61503697 . TGGG TGCGGG 7.36 . INDEL;DP=13;AF1=0.501;CI95=0.5,0.5;DP4=1,0,1,0;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,24:2:0:0/1:27 +chr11 61508191 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 61519933 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 61524111 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 61530743 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 61548378 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 61548559 . A G 99 . DP=23;AF1=1;CI95=1,1;DP4=0,0,11,7;MQ=49 PL:DP:SP:GT:GQ 197,54,0:18:0:1/1:99 +chr11 61549025 . G A 79.2 . DP=13;AF1=1;CI95=0.5,1;DP4=0,1,9,1;MQ=48;PV4=0.18,1,1,1 PL:DP:SP:GT:GQ 112,17,0:11:0:1/1:85 +chr11 61551356 . T C 99 . DP=15;AF1=1;CI95=1,1;DP4=0,0,7,3;MQ=43 PL:DP:SP:GT:GQ 255,30,0:10:0:1/1:99 +chr11 61553669 . C A 12.3 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=49;PV4=1,0.35,0.35,0.08 PL:DP:SP:GT:GQ 42,0,50:6:0:0/1:44 +chr11 61560081 . G A 11.6 . DP=35;AF1=0.543;CI95=0.5,1;DP4=0,1,1,3;MQ=50;PV4=1,0.031,1,1 PL:DP:SP:GT:GQ 41,0,8:5:0:0/1:11 +chr11 61562288 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 61571348 . C G 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 61593772 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 61596093 . CC CCGAGC,CCGTCTTC 9.94 . INDEL;DP=8;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 91,47,47,44,0,44:2:0:1/1:41 +chr11 61600459 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 61602701 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 61615803 . C G 37 . DP=45;AF1=0.5;CI95=0.5,0.5;DP4=6,8,1,7;MQ=48;PV4=0.19,1.4e-06,0.071,1 PL:DP:SP:GT:GQ 67,0,255:22:7:0/1:70 +chr11 61617147 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 61617163 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 61624414 . T C 30 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=6,0,3,0;MQ=48;PV4=1,0.037,2.7e-09,1 PL:DP:SP:GT:GQ 60,0,158:9:0:0/1:63 +chr11 61629807 . G GGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 61644287 . C G 5.29 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr11 61645798 . A ATCG 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=1,2,1,0;MQ=50;PV4=1,0.44,1,0.33 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr11 61666748 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 61666895 . C G 3.01 . DP=7;AF1=0.4998;CI95=0.5,0.5;DP4=0,2,0,2;MQ=49;PV4=1,0.19,0.21,1 PL:DP:SP:GT:GQ 30,0,49:4:0:0/1:33 +chr11 61674913 . G C 4.13 . DP=12;AF1=0.4998;CI95=0.5,0.5;DP4=3,3,3,0;MQ=48;PV4=0.46,0.085,0.046,1 PL:DP:SP:GT:GQ 32,0,161:9:3:0/1:35 +chr11 61681320 . A ATACAAGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 61725599 . ATCCTCC ATCCTCCGCCTCCTCC 5.08 . INDEL;DP=35;AF1=0.5;CI95=0.5,0.5;DP4=7,4,3,1;MQ=50;PV4=1,1,1,0.17 PL:DP:SP:GT:GQ 41,0,176:15:0:0/1:44 +chr11 61725608 . CTCCTCC CTCCTCCTCTTCCTCC 13.7 . INDEL;DP=42;AF1=0.5;CI95=0.5,0.5;DP4=5,12,3,1;MQ=50;PV4=0.25,1,1,1 PL:DP:SP:GT:GQ 51,0,231:21:6:0/1:54 +chr11 61725613 . CC CCTC 13.7 . INDEL;DP=44;AF1=0.5;CI95=0.5,0.5;DP4=10,15,3,1;MQ=50;PV4=0.3,1,1,0.36 PL:DP:SP:GT:GQ 51,0,255:29:5:0/1:54 +chr11 61732811 . AGTATGAC AGTATGACGTATGAC 99 . INDEL;DP=58;AF1=0.5004;CI95=0.5,0.5;DP4=7,0,30,6;MQ=50;PV4=0.57,1,1,1 PL:DP:SP:GT:GQ 255,0,28:43:2:0/1:31 +chr11 61732817 . AC ACGTATGTC 99 . INDEL;DP=61;AF1=0.5;CI95=0.5,0.5;DP4=13,3,22,5;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 255,0,177:43:0:0/1:99 +chr11 61744744 . TGCGGAGGGC TGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 61768740 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 61773440 . T TGGCTTGTAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 61813932 . G C 5.46 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,44:2:0:0/1:37 +chr11 61829465 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 61859028 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 61895741 . A G 49.6 . DP=29;AF1=0.5939;CI95=0.5,1;DP4=0,1,2,4;MQ=49;PV4=1,0.099,0.17,1 PL:DP:SP:GT:GQ 79,0,5:7:0:0/1:7 +chr11 61906299 . A G 99 . DP=11;AF1=1;CI95=1,1;DP4=0,0,6,2;MQ=46 PL:DP:SP:GT:GQ 156,24,0:8:0:1/1:96 +chr11 61906374 . T C 99 . DP=21;AF1=1;CI95=1,1;DP4=0,0,9,10;MQ=43 PL:DP:SP:GT:GQ 255,57,0:19:0:1/1:99 +chr11 61907631 . T A 20 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=48 PL:DP:SP:GT:GQ 52,9,0:3:0:1/1:63 +chr11 61914617 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 61916128 . A C 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 61916299 . A G 3.01 . DP=10;AF1=0.4998;CI95=0.5,0.5;DP4=1,1,0,2;MQ=48;PV4=1,0.0017,1,1 PL:DP:SP:GT:GQ 30,0,57:4:0:0/1:33 +chr11 61916337 . T A 41 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,5;MQ=48;PV4=1,0.32,0.00097,0.48 PL:DP:SP:GT:GQ 71,0,88:10:0:0/1:74 +chr11 61960763 . TC TCC 99 . INDEL;DP=10;AF1=0.7303;CI95=0.5,1;DP4=1,0,8,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 152,0,2:9:0:0/1:3 +chr11 61963024 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 61963879 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 61967109 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 61973243 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 62009464 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 62016793 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 62021872 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 62033529 . a aCATAAAGT 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=47 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 62074693 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 62078884 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 62087406 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 62096198 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 62098407 . G A 4.77 . DP=14;AF1=0.4999;CI95=0.5,0.5;DP4=3,3,5,0;MQ=19;PV4=0.18,0.00052,0.15,1 PL:DP:SP:GT:GQ 33,0,76:11:7:0/1:36 +chr11 62098726 . C T 55 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=1,7,1,8;MQ=47;PV4=1,7.8e-08,1,1 PL:DP:SP:GT:GQ 85,0,210:17:0:0/1:88 +chr11 62124743 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 62139872 . C A 7.59 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=50 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr11 62154710 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 62173681 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 62190448 . C G 25 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=48 PL:DP:SP:GT:GQ 57,9,0:3:0:1/1:63 +chr11 62199317 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 62258167 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 62273469 . ga gAACTGCa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 62285338 . C G 29 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=5,2,0,6;MQ=49;PV4=0.021,0.093,0.044,1 PL:DP:SP:GT:GQ 59,0,140:13:17:0/1:62 +chr11 62292882 . G T 23.3 . DP=28;AF1=0.5336;CI95=0.5,1;DP4=1,0,1,3;MQ=49;PV4=0.4,0.099,0.25,1 PL:DP:SP:GT:GQ 53,0,9:5:0:0/1:12 +chr11 62293948 . G A 16.1 . DP=81;AF1=0.5;CI95=0.5,0.5;DP4=30,23,9,14;MQ=23;PV4=0.21,3.6e-26,0.043,1 PL:DP:SP:GT:GQ 46,0,236:76:7:0/1:49 +chr11 62294088 . GAGAA GAGAAGAA 7.35 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 62311881 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 62319638 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 62334521 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 62344879 . TC TCGCCC 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 62365665 . G A 28 . DP=37;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=48 PL:DP:SP:GT:GQ 60,9,0:3:0:1/1:63 +chr11 62370296 . CG CGTG 5.08 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.42 PL:DP:SP:GT:GQ 41,0,49:3:0:0/1:43 +chr11 62371110 . CT CTCAAT 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,102:4:0:0/1:41 +chr11 62376953 . CAGAGA CAGAGAGA 5.08 . INDEL;DP=21;AF1=0.5;CI95=0.5,0.5;DP4=1,8,1,1;MQ=50;PV4=0.35,1,1,0.002 PL:DP:SP:GT:GQ 41,0,182:11:5:0/1:44 +chr11 62379578 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 62384118 . C T 3.54 . DP=6;AF1=0.4998;CI95=0.5,0.5;DP4=0,3,0,1;MQ=48;PV4=1,1,0,1 PL:DP:SP:GT:GQ 31,0,82:4:0:0/1:34 +chr11 62384869 . T C 4.88 . DP=29;AF1=0.5206;CI95=0.5,1;DP4=0,1,1,2;MQ=50;PV4=1,0.064,1,1 PL:DP:SP:GT:GQ 33,0,11:4:0:0/1:14 +chr11 62394866 . T G 58.3 . DP=25;AF1=0.5336;CI95=0.5,1;DP4=0,2,0,8;MQ=48;PV4=1,1,0.018,0.2 PL:DP:SP:GT:GQ 88,0,9:10:0:0/1:12 +chr11 62401716 . A G 18 . DP=21;AF1=0.6671;CI95=0.5,1;DP4=1,0,5,0;MQ=49;PV4=1,0.21,0.35,0.2 PL:DP:SP:GT:GQ 47,0,3:6:0:0/1:5 +chr11 62416069 . G A 4.77 . DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,2;MQ=48;PV4=1,0.096,0.16,1 PL:DP:SP:GT:GQ 33,0,68:4:0:0/1:36 +chr11 62430659 . T A 4.61 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=50 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 62483436 . A T 10.4 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,3;MQ=49;PV4=1,0.17,0.18,1 PL:DP:SP:GT:GQ 40,0,87:7:0:0/1:43 +chr11 62489924 . C G 6.98 . DP=16;AF1=0.4999;CI95=0.5,0.5;DP4=0,6,0,4;MQ=49;PV4=1,0.34,0.04,1 PL:DP:SP:GT:GQ 36,0,76:10:0:0/1:39 +chr11 62489929 . T G 20.7 . DP=15;AF1=0.5939;CI95=0.5,1;DP4=0,1,0,4;MQ=47;PV4=1,1,0.23,0.42 PL:DP:SP:GT:GQ 50,0,5:5:0:0/1:7 +chr11 62490219 . G A 21 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=0,11,1,4;MQ=49;PV4=0.31,0.0067,0.0044,1 PL:DP:SP:GT:GQ 51,0,201:16:0:0/1:54 +chr11 62494231 . TCCGCCG TCCG 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 62494630 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 62496519 . T C 8.64 . DP=49;AF1=0.5;CI95=0.5,0.5;DP4=3,10,3,3;MQ=50;PV4=0.32,1.1e-06,1,1 PL:DP:SP:GT:GQ 38,0,255:19:5:0/1:41 +chr11 62520842 . CA CACTCTTCACCTA 12.7 . INDEL;DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 62524868 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 62560244 . A C 14.2 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,5;MQ=49;PV4=1,0.028,0.24,0.14 PL:DP:SP:GT:GQ 44,0,42:8:0:0/1:43 +chr11 62563353 . G A 18.8 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=48 PL:DP:SP:GT:GQ 50,6,0:2:0:1/1:49 +chr11 62593085 . C G 3.55 . DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 62603213 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 62628503 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 62644968 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 62647240 . T TCC 5.8 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 62650561 . C CTCTCCTA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 62652063 . A G 99 . DP=38;AF1=1;CI95=1,1;DP4=1,0,16,11;MQ=46;PV4=1,1,0.025,1 PL:DP:SP:GT:GQ 255,58,0:28:0:1/1:99 +chr11 62652779 . C T 11.3 . DP=28;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 43,9,0:3:0:1/1:63 +chr11 62655685 . G C 14.2 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=4,2,0,3;MQ=49;PV4=0.17,0.0011,0.00087,0.43 PL:DP:SP:GT:GQ 44,0,210:9:8:0/1:47 +chr11 62702506 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 62718370 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 62722783 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 62744075 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 62747145 . A G 41.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=46 PL:DP:SP:GT:GQ 74,12,0:4:0:1/1:72 +chr11 62748772 . ATCC ATCCTCC 3.8 . INDEL;DP=13;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,2;MQ=50;PV4=1,1,1,0.0081 PL:DP:SP:GT:GQ 39,0,113:8:0:0/1:42 +chr11 62748773 . TCC TCCCCC 8.18 . INDEL;DP=13;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,2;MQ=50;PV4=1,1,1,0.061 PL:DP:SP:GT:GQ 45,0,128:9:0:0/1:48 +chr11 62766431 . A T 99 . DP=36;AF1=1;CI95=1,1;DP4=0,1,14,12;MQ=47;PV4=0.48,0.0027,0.2,1 PL:DP:SP:GT:GQ 248,31,0:27:0:1/1:99 +chr11 62767551 . AG AGGCCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 62799277 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 62799988 . G T 10.4 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=6,0,3,0;MQ=49;PV4=1,1,0.0046,0.46 PL:DP:SP:GT:GQ 40,0,76:9:0:0/1:43 +chr11 62800515 . G T 14.2 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,1,0,3;MQ=49;PV4=0.4,0.00042,0.079,0.48 PL:DP:SP:GT:GQ 44,0,124:6:4:0/1:47 +chr11 62814965 . G A 9.31 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr11 62815333 . A T 3.54 . DP=2;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,30:2:0:0/1:30 +chr11 62815381 . A G 99 . DP=15;AF1=0.5032;CI95=0.5,0.5;DP4=2,0,5,6;MQ=48;PV4=0.46,0.075,0.095,0.46 PL:DP:SP:GT:GQ 142,0,19:13:3:0/1:22 +chr11 62815510 . G C 56.5 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=47 PL:DP:SP:GT:GQ 89,12,0:4:0:1/1:72 +chr11 62848588 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 62866590 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 62883435 . G A 20 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=41 PL:DP:SP:GT:GQ 52,9,0:3:0:1/1:63 +chr11 62910891 . C A 12.3 . DP=14;AF1=0.5063;CI95=0.5,0.5;DP4=0,1,1,2;MQ=48;PV4=1,0.15,1,0.021 PL:DP:SP:GT:GQ 42,0,16:4:0:0/1:19 +chr11 62928919 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 62931484 . T C 99 . DP=27;AF1=1;CI95=1,1;DP4=0,0,5,9;MQ=45 PL:DP:SP:GT:GQ 255,42,0:14:0:1/1:99 +chr11 62933565 . G C 99 . DP=15;AF1=1;CI95=1,1;DP4=0,0,7,4;MQ=44 PL:DP:SP:GT:GQ 244,33,0:11:0:1/1:99 +chr11 62943944 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 62944810 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 62946900 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 62951041 . G A 99 . DP=13;AF1=1;CI95=1,1;DP4=0,0,11,1;MQ=44 PL:DP:SP:GT:GQ 200,36,0:12:0:1/1:99 +chr11 62951064 . C A 91 . DP=18;AF1=1;CI95=1,1;DP4=0,0,16,0;MQ=46 PL:DP:SP:GT:GQ 124,48,0:16:0:1/1:99 +chr11 62951312 . G C 57.5 . DP=26;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=45 PL:DP:SP:GT:GQ 90,12,0:4:0:1/1:72 +chr11 62951837 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 62984697 . T C 50 . DP=6;AF1=0.502;CI95=0.5,0.5;DP4=1,0,5,0;MQ=46;PV4=1,0.064,1,0.062 PL:DP:SP:GT:GQ 80,0,21:6:0:0/1:24 +chr11 62996682 . G C 47.2 . DP=22;AF1=0.5263;CI95=0.5,1;DP4=1,0,5,0;MQ=46;PV4=1,0.34,0.14,1 PL:DP:SP:GT:GQ 77,0,10:6:0:0/1:13 +chr11 62996836 . T C 25.2 . DP=28;AF1=0.5207;CI95=0.5,1;DP4=1,0,2,2;MQ=49;PV4=1,0.12,0.29,1 PL:DP:SP:GT:GQ 55,0,11:5:0:0/1:14 +chr11 63011157 . G T 22 . DP=13;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=47 PL:DP:SP:GT:GQ 54,9,0:3:0:1/1:63 +chr11 63011204 . A C 29 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=48 PL:DP:SP:GT:GQ 61,9,0:3:0:1/1:63 +chr11 63035380 . c cTTCCAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 63044020 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 63058063 . C G 99 . DP=26;AF1=1;CI95=1,1;DP4=0,0,1,23;MQ=49 PL:DP:SP:GT:GQ 135,72,0:24:0:1/1:99 +chr11 63064823 . T C 33.5 . DP=42;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=49 PL:DP:SP:GT:GQ 66,12,0:4:0:1/1:72 +chr11 63064970 . T G 67.5 . DP=41;AF1=0.9998;CI95=0.5,1;DP4=1,0,1,7;MQ=48;PV4=0.22,0.3,0.2,1 PL:DP:SP:GT:GQ 97,2,0:9:0:1/1:37 +chr11 63065156 . G A 99 . DP=49;AF1=1;CI95=1,1;DP4=1,0,13,24;MQ=48;PV4=0.37,0.36,0.23,1 PL:DP:SP:GT:GQ 255,87,0:38:0:1/1:99 +chr11 63066903 . T C 19.8 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 51,6,0:2:0:1/1:49 +chr11 63067138 . T G 23 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 55,9,0:3:0:1/1:63 +chr11 63071683 . T C 7.8 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=4,9,0,6;MQ=48;PV4=0.26,0.037,0.018,1 PL:DP:SP:GT:GQ 37,0,218:19:6:0/1:40 +chr11 63072310 . C T 41.5 . DP=59;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=48 PL:DP:SP:GT:GQ 74,12,0:4:0:1/1:72 +chr11 63078522 . A G 4.21 . DP=8;AF1=0.5161;CI95=0.5,0.5;DP4=0,1,2,0;MQ=49;PV4=0.33,1,0.33,1 PL:DP:SP:GT:GQ 32,0,12:3:0:0/1:15 +chr11 63078625 . A ATGCACG 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 63095493 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 63109381 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 63121123 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 63130034 . A G 99 . DP=21;AF1=1;CI95=1,1;DP4=0,0,0,17;MQ=48 PL:DP:SP:GT:GQ 146,51,0:17:0:1/1:99 +chr11 63137935 . G C 99 . DP=45;AF1=1;CI95=1,1;DP4=1,0,8,31;MQ=48;PV4=0.22,0.26,0.22,1 PL:DP:SP:GT:GQ 228,95,0:40:0:1/1:99 +chr11 63137996 . T C 51.3 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=45 PL:DP:SP:GT:GQ 84,15,0:5:0:1/1:75 +chr11 63141287 . G A 31.1 . DP=37;AF1=0.5129;CI95=0.5,0.5;DP4=0,1,1,3;MQ=48;PV4=1,0.24,0.16,1 PL:DP:SP:GT:GQ 61,0,13:5:0:0/1:16 +chr11 63146448 . C G 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 63174890 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 63176367 . G A 33.5 . DP=28;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=49 PL:DP:SP:GT:GQ 66,12,0:4:0:1/1:72 +chr11 63177242 . ATTTTTT ATTTTTTT 11.3 . INDEL;DP=14;AF1=1;CI95=0.5,1;DP4=1,0,6,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 49,4,0:7:0:1/1:45 +chr11 63185132 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 63233708 . CAA CA 19.5 . INDEL;DP=49;AF1=0.5;CI95=0.5,0.5;DP4=2,2,1,2;MQ=50;PV4=1,1,1,0.1 PL:DP:SP:GT:GQ 57,0,78:7:0:0/1:60 +chr11 63233710 . A G 3.01 . DP=46;AF1=0.4998;CI95=0.5,0.5;DP4=1,2,2,1;MQ=50;PV4=1,0.073,0.19,1 PL:DP:SP:GT:GQ 30,0,53:6:0:0/1:33 +chr11 63236052 . C G 3.01 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,37:2:0:0/1:32 +chr11 63258338 . A T 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 63258416 . T C 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 63313644 . T C 21.5 . DP=29;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=50 PL:DP:SP:GT:GQ 54,12,0:4:0:1/1:72 +chr11 63314680 . T TCTCCCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 63326209 . G A 20 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=0,11,0,5;MQ=49;PV4=1,0.084,0.064,1 PL:DP:SP:GT:GQ 50,0,151:16:0:0/1:53 +chr11 63328600 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 63357919 . C T 99 . DP=22;AF1=1;CI95=1,1;DP4=0,0,0,18;MQ=46 PL:DP:SP:GT:GQ 154,54,0:18:0:1/1:99 +chr11 63369784 . g gTT 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 63381099 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 63384138 . t tCCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 63388596 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 63405015 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 63413962 . aaaataaata aaaata 85.4 . INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 125,9,0:3:0:1/1:63 +chr11 63413968 . aatat a 20.5 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 58,0,43:4:0:0/1:46 +chr11 63458428 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 63487433 . G T 4.77 . DP=26;AF1=0.4999;CI95=0.5,0.5;DP4=3,6,2,3;MQ=48;PV4=1,0.3,0.17,0.4 PL:DP:SP:GT:GQ 33,0,167:14:0:0/1:36 +chr11 63487435 . A C 20 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=9,4,0,6;MQ=48;PV4=0.011,0.0037,0.35,1 PL:DP:SP:GT:GQ 50,0,255:19:20:0/1:53 +chr11 63488005 . A C 10.4 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=1,3,0,3;MQ=49;PV4=1,0.14,0.037,0.17 PL:DP:SP:GT:GQ 40,0,96:7:0:0/1:43 +chr11 63489980 . c cTCCTAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 63495318 . a aGACAGTCTCT 10.8 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr11 63500223 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 63528425 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 63543691 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 63545882 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 63610847 . C CTCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 63656487 . TC TCAGCTCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 63662348 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 63664634 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 63666536 . G C 85 . DP=50;AF1=0.5;CI95=0.5,0.5;DP4=3,19,15,0;MQ=49;PV4=8.7e-08,0.00067,6.7e-07,0.19 PL:DP:SP:GT:GQ 115,0,255:37:71:0/1:99 +chr11 63668287 . C T 8.64 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,4,1,1;MQ=48;PV4=0.33,0.011,0,0.2 PL:DP:SP:GT:GQ 38,0,135:6:0:0/1:41 +chr11 63668556 . C CTA 7.62 . INDEL;DP=19;AF1=0.543;CI95=0.5,1;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,8:2:0:0/1:11 +chr11 63668557 . C T 29.5 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=49 PL:DP:SP:GT:GQ 62,12,0:4:0:1/1:72 +chr11 63680297 . A G 16.9 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 48,6,0:2:0:1/1:49 +chr11 63681421 . C T 4.13 . DP=5;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,1,1;MQ=49;PV4=1,0.015,0.21,0.19 PL:DP:SP:GT:GQ 32,0,80:4:0:0/1:35 +chr11 63681513 . T C 17.8 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=47 PL:DP:SP:GT:GQ 49,6,0:2:0:1/1:49 +chr11 63695894 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 63702844 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 63714564 . T TGGTTGCGG 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 63729785 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 63734346 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 63764764 . C A 6.2 . DP=4;AF1=0.5009;CI95=0.5,0.5;DP4=0,1,0,2;MQ=47;PV4=1,0.22,0.077,1 PL:DP:SP:GT:GQ 35,0,24:3:0:0/1:27 +chr11 63765035 . C G 3.01 . DP=17;AF1=0.4997;CI95=0.5,0.5;DP4=1,2,0,2;MQ=46;PV4=1,0.26,0.11,1 PL:DP:SP:GT:GQ 30,0,75:5:0:0/1:33 +chr11 63766448 . G T 3.55 . DP=4;AF1=0.5018;CI95=0.5,0.5;DP4=1,0,1,0;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,21:2:0:0/1:24 +chr11 63796955 . CC CCCTGC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 63813695 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 63838627 . t tGGGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 63839669 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 63841166 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 63853279 . g gACGTGAGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 63855132 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 63859124 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 63860658 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 63872245 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 63883985 . T C 99 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=6,14,8,9;MQ=48;PV4=0.33,1.5e-15,1.8e-06,0.18 PL:DP:SP:GT:GQ 182,0,255:37:5:0/1:99 +chr11 63884611 . C A 4.13 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,0,2;MQ=49;PV4=0.33,0.13,0.092,1 PL:DP:SP:GT:GQ 32,0,64:4:5:0/1:35 +chr11 63885034 . C CACCA 7.35 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 63885588 . C G 26 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=2,1,4,0;MQ=48;PV4=0.43,1,0.23,0.37 PL:DP:SP:GT:GQ 56,0,42:7:0:0/1:45 +chr11 63885632 . A G 7.15 . DP=35;AF1=0.5263;CI95=0.5,1;DP4=1,0,4,0;MQ=49;PV4=1,0.046,0.34,1 PL:DP:SP:GT:GQ 36,0,10:5:0:0/1:13 +chr11 63885704 . C T 99 . DP=38;AF1=0.5;CI95=0.5,0.5;DP4=2,9,0,23;MQ=46;PV4=0.098,2.5e-06,4.8e-09,1 PL:DP:SP:GT:GQ 172,0,236:34:10:0/1:99 +chr11 63961574 . T A 9.31 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr11 63961850 . T G 13.2 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=2,5,0,4;MQ=49;PV4=0.49,0.035,0.065,0.39 PL:DP:SP:GT:GQ 43,0,176:11:3:0/1:46 +chr11 63962152 . T C 99 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=0,12,0,12;MQ=47;PV4=1,4.9e-05,6.9e-05,1 PL:DP:SP:GT:GQ 130,0,214:24:0:0/1:99 +chr11 63976670 . C T 5.46 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,43:2:0:0/1:36 +chr11 63978150 . C A 17.3 . DP=9;AF1=0.5263;CI95=0.5,1;DP4=0,1,0,3;MQ=49;PV4=1,1,0.17,0.072 PL:DP:SP:GT:GQ 47,0,10:4:0:0/1:13 +chr11 63978202 . GG GGTTTG 7.35 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 63980341 . c cTGT 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 63990941 . A C 11.4 . DP=8;AF1=0.5128;CI95=0.5,0.5;DP4=0,1,0,3;MQ=48;PV4=1,0.28,0.24,0.36 PL:DP:SP:GT:GQ 41,0,13:4:0:0/1:16 +chr11 63990996 . ACCC ACC 52.5 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,5;MQ=50;PV4=1,3.4e-05,1,0.031 PL:DP:SP:GT:GQ 90,0,40:7:0:0/1:43 +chr11 63991801 . T C 99 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=1,6,1,13;MQ=46;PV4=1,0.13,1.5e-06,1 PL:DP:SP:GT:GQ 224,0,177:21:0:0/1:99 +chr11 63993370 . G A 5.46 . DP=3;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,1;MQ=48;PV4=1,0,0,0.2 PL:DP:SP:GT:GQ 34,0,83:3:0:0/1:37 +chr11 63997338 . T C 50.5 . DP=19;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=46 PL:DP:SP:GT:GQ 83,12,0:4:0:1/1:72 +chr11 64000410 . C G 19.1 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=0,11,0,6;MQ=49;PV4=1,0.002,0.0074,1 PL:DP:SP:GT:GQ 49,0,192:17:0:0/1:52 +chr11 64004624 . CTTGTTTGT CTTGT 99 . INDEL;DP=16;AF1=1;CI95=0.5,1;DP4=1,0,11,0;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 227,16,0:12:0:1/1:80 +chr11 64004944 . TC TCCC 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.077 PL:DP:SP:GT:GQ 41,0,82:3:0:0/1:44 +chr11 64006070 . GCA G 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 64010631 . TG TGAG 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,82:3:0:0/1:44 +chr11 64011441 . T C 99 . DP=27;AF1=1;CI95=1,1;DP4=0,0,5,14;MQ=48 PL:DP:SP:GT:GQ 216,57,0:19:0:1/1:99 +chr11 64013716 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 64022459 . A G 47.1 . DP=22;AF1=0.5102;CI95=0.5,0.5;DP4=0,1,4,1;MQ=46;PV4=0.33,0.14,0.21,1 PL:DP:SP:GT:GQ 77,0,14:6:0:0/1:17 +chr11 64024048 . G C 7.8 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,1,2,0;MQ=48;PV4=1,0.037,0.072,1 PL:DP:SP:GT:GQ 37,0,79:4:0:0/1:40 +chr11 64031434 . CG CGCAG 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 64031840 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 64039066 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 64056752 . C T 3.01 . DP=15;AF1=0.4998;CI95=0.5,0.5;DP4=4,0,3,0;MQ=49;PV4=1,1,0.22,0.43 PL:DP:SP:GT:GQ 30,0,42:7:0:0/1:33 +chr11 64062354 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 64064935 . GCAGAA GCAGAATCAGAA 5.11 . INDEL;DP=22;AF1=0.505;CI95=0.5,0.5;DP4=2,0,1,0;MQ=49;PV4=1,1,1,0.41 PL:DP:SP:GT:GQ 41,0,17:3:0:0/1:20 +chr11 64081736 . T C,A 6.98 . DP=11;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 49,16,36,13,0,36:2:0:1/1:41 +chr11 64082807 . C T 99 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,6;MQ=46;PV4=1,0.0014,2.4e-07,1 PL:DP:SP:GT:GQ 132,0,167:12:0:0/1:99 +chr11 64084325 . T G 11.3 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=49;PV4=1,0.1,0.058,0.0041 PL:DP:SP:GT:GQ 41,0,68:6:0:0/1:44 +chr11 64085074 . T A 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 64088069 . T C 5.29 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr11 64088435 . A G 14.1 . DP=16;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 46,9,0:3:0:1/1:63 +chr11 64088612 . T A 14.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=48 PL:DP:SP:GT:GQ 46,6,0:2:0:1/1:49 +chr11 64100502 . a aGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 64111669 . T G 9.52 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=9,3,0,4;MQ=49;PV4=0.019,0.00071,8.3e-05,1 PL:DP:SP:GT:GQ 39,0,255:16:17:0/1:42 +chr11 64116843 . A C 22 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=50 PL:DP:SP:GT:GQ 54,9,0:3:0:1/1:63 +chr11 64124595 . C T 50 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=1,9,0,9;MQ=49;PV4=1,0.0008,0.0044,1 PL:DP:SP:GT:GQ 80,0,207:19:0:0/1:83 +chr11 64147055 . a aGC 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 64149085 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 64151896 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 64157484 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 64189799 . t tTCACGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 64222469 . tgc tGCCAgc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 64225380 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 64242904 . TGGT TGGTGGGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 64249132 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 64272170 . AG AGGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 64323271 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 64323783 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 64339111 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 64343007 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 64349299 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 64349763 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 64349765 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 64359857 . C T 14.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 64360274 . T C 99 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=12,7,14,7;MQ=49;PV4=1,2.3e-12,0.017,0.19 PL:DP:SP:GT:GQ 176,0,255:40:0:0/1:99 +chr11 64365299 . C T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 64366165 . C T 3.54 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,1,0;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,44:2:0:0/1:34 +chr11 64377398 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 64391188 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 64396737 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 64398304 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 64407182 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 64412851 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 64415998 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 64419119 . C G 24 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=2,2,0,3;MQ=48;PV4=0.43,0.28,0.0042,1 PL:DP:SP:GT:GQ 54,0,102:7:4:0/1:57 +chr11 64419487 . C A 47 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=3,10,8,0;MQ=49;PV4=0.001,0.17,5.6e-09,1 PL:DP:SP:GT:GQ 77,0,206:21:30:0/1:80 +chr11 64434938 . C CGA 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.38 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr11 64440574 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 64453269 . G T 4.77 . DP=31;AF1=0.4999;CI95=0.5,0.5;DP4=4,4,1,2;MQ=49;PV4=1,0.15,0.0088,1 PL:DP:SP:GT:GQ 33,0,188:11:0:0/1:36 +chr11 64458567 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 64465403 . T C 69 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,4;MQ=46;PV4=1,0.18,0.00049,1 PL:DP:SP:GT:GQ 99,0,59:6:0:0/1:62 +chr11 64472208 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 64472541 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 64478302 . C G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 64479579 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 64482531 . g gTGATCGTTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 64483230 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 64484222 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 64496300 . C CGA 3.25 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,0.083 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr11 64496587 . T C 12 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr11 64497161 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 64503496 . A G 22 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 54,9,0:3:0:1/1:63 +chr11 64504614 . G C 5.46 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,44:2:0:0/1:37 +chr11 64508929 . T G 7.8 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,1,2,0;MQ=46;PV4=0.33,0.034,0.27,1 PL:DP:SP:GT:GQ 37,0,41:3:0:0/1:39 +chr11 64514397 . T C 99 . DP=39;AF1=0.5;CI95=0.5,0.5;DP4=8,7,5,6;MQ=48;PV4=1,0.2,3.1e-05,1 PL:DP:SP:GT:GQ 178,0,255:26:0:0/1:99 +chr11 64519345 . G A 36 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=9,0,9,0;MQ=49;PV4=1,1.5e-06,1,1 PL:DP:SP:GT:GQ 66,0,191:18:0:0/1:69 +chr11 64521124 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 64522181 . TC TCAAC 9.04 . INDEL;DP=24;AF1=0.5;CI95=0.5,0.5;DP4=1,11,4,0;MQ=50;PV4=0.0027,1,1,0.071 PL:DP:SP:GT:GQ 46,0,145:16:26:0/1:49 +chr11 64525644 . G T 9.31 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr11 64536866 . T C 99 . DP=37;AF1=1;CI95=0.5,1;DP4=1,0,5,11;MQ=48;PV4=0.35,0.0025,0.13,1 PL:DP:SP:GT:GQ 157,11,0:17:0:1/1:66 +chr11 64537587 . C G 13.2 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,2;MQ=41;PV4=0.33,0.026,0.17,1 PL:DP:SP:GT:GQ 43,0,39:3:0:0/1:41 +chr11 64543927 . GT GTT 99 . INDEL;DP=31;AF1=0.5;CI95=0.5,0.5;DP4=11,1,11,1;MQ=50;PV4=1,1,1,0.006 PL:DP:SP:GT:GQ 190,0,158:24:0:0/1:99 +chr11 64544135 . C T 4.13 . DP=32;AF1=0.4998;CI95=0.5,0.5;DP4=0,20,0,10;MQ=50;PV4=1,3.2e-19,0.08,1 PL:DP:SP:GT:GQ 32,0,244:30:0:0/1:35 +chr11 64557132 . C T 60 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=6,1,4,4;MQ=50;PV4=0.28,0.002,0.18,0.49 PL:DP:SP:GT:GQ 90,0,177:15:5:0/1:93 +chr11 64559898 . T C 14.2 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,2;MQ=48;PV4=1,0.06,1.5e-05,1 PL:DP:SP:GT:GQ 44,0,128:6:0:0/1:47 +chr11 64569158 . G GCA 6.55 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 43,0,38:2:0:0/1:40 +chr11 64570914 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 64572018 . T C 38.3 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=49 PL:DP:SP:GT:GQ 71,15,0:5:0:1/1:75 +chr11 64572557 . A G 99 . DP=21;AF1=0.5939;CI95=0.5,1;DP4=1,1,4,9;MQ=47;PV4=1,1,0.088,1 PL:DP:SP:GT:GQ 185,0,5:15:0:0/1:7 +chr11 64572602 . G A 99 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=11,7,3,8;MQ=48;PV4=0.13,0.00036,4.8e-12,0.023 PL:DP:SP:GT:GQ 208,0,255:29:9:0/1:99 +chr11 64575027 . C T 4.77 . DP=18;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,3,0;MQ=50;PV4=1,1,0.14,1 PL:DP:SP:GT:GQ 33,0,38:7:0:0/1:35 +chr11 64594490 . A G 34.1 . DP=33;AF1=0.5102;CI95=0.5,0.5;DP4=1,1,6,1;MQ=50;PV4=0.42,0.22,0.31,1 PL:DP:SP:GT:GQ 64,0,14:9:4:0/1:17 +chr11 64596855 . G C 10.5 . DP=11;AF1=0.505;CI95=0.5,0.5;DP4=2,0,3,0;MQ=49;PV4=1,1,0.25,0.45 PL:DP:SP:GT:GQ 40,0,17:5:0:0/1:20 +chr11 64598944 . A G 15.1 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=2,0,3,0;MQ=49;PV4=1,0.28,0.14,1 PL:DP:SP:GT:GQ 45,0,39:5:0:0/1:41 +chr11 64606177 . C T 46.1 . DP=38;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=49 PL:DP:SP:GT:GQ 79,18,0:6:0:1/1:90 +chr11 64606765 . T C 28.5 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=48 PL:DP:SP:GT:GQ 61,12,0:4:0:1/1:72 +chr11 64608172 . GCCCCCC GCCCCC 33.5 . INDEL;DP=25;AF1=1;CI95=1,1;DP4=0,0,0,18;MQ=50 PL:DP:SP:GT:GQ 74,54,0:18:0:1/1:99 +chr11 64612977 . CT CTACTCAGCTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 64619345 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 64622419 . T G 94.3 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=44 PL:DP:SP:GT:GQ 127,15,0:5:0:1/1:75 +chr11 64627626 . G T 4.95 . DP=5;AF1=0.5335;CI95=0.5,1;DP4=0,1,0,2;MQ=48;PV4=1,1,0.28,1 PL:DP:SP:GT:GQ 33,0,9:3:0:0/1:12 +chr11 64627635 . TCT TCTAGCT 4.52 . INDEL;DP=8;AF1=0.5207;CI95=0.5,0.5;DP4=1,0,0,1;MQ=48;PV4=1,1,1,1 PL:DP:SP:GT:GQ 40,0,11:2:0:0/1:14 +chr11 64634183 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 64658693 . C A 4.61 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 64663959 . C T 4.13 . DP=6;AF1=0.4998;CI95=0.5,0.5;DP4=1,2,0,2;MQ=49;PV4=1,0.43,0.014,1 PL:DP:SP:GT:GQ 32,0,64:5:0:0/1:35 +chr11 64669417 . T C 30.5 . DP=19;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=47 PL:DP:SP:GT:GQ 63,12,0:4:0:1/1:72 +chr11 64673862 . G A 20 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,5;MQ=49;PV4=1,0.0019,0.0012,1 PL:DP:SP:GT:GQ 50,0,181:13:0:0/1:53 +chr11 64674917 . AAG AAGAG 3.25 . INDEL;DP=9;AF1=0.5;CI95=0.5,0.5;DP4=1,2,1,0;MQ=50;PV4=1,1,1,0.36 PL:DP:SP:GT:GQ 38,0,93:4:0:0/1:41 +chr11 64678036 . T C 3.01 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,30:2:0:0/1:30 +chr11 64678312 . CCACAG CCACAGCACAG 7.37 . INDEL;DP=3;AF1=0.5032;CI95=0.5,0.5;DP4=0,1,0,1;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,19:2:0:0/1:22 +chr11 64680062 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 64684570 . T G 33 . DP=39;AF1=0.5;CI95=0.5,0.5;DP4=8,5,0,8;MQ=49;PV4=0.0068,0.021,0.0012,0.057 PL:DP:SP:GT:GQ 63,0,239:21:22:0/1:66 +chr11 64687503 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 64694192 . G A 8.64 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=4,0,4,0;MQ=48;PV4=1,0.34,0.04,1 PL:DP:SP:GT:GQ 38,0,68:8:0:0/1:41 +chr11 64698106 . T A 6.04 . DP=5;AF1=0.6242;CI95=0.5,1;DP4=0,1,0,2;MQ=48;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,4:3:0:0/1:6 +chr11 64699217 . C A 3.01 . DP=26;AF1=0.4997;CI95=0.5,0.5;DP4=12,3,0,5;MQ=50;PV4=0.0036,9.2e-05,0.011,0.27 PL:DP:SP:GT:GQ 30,0,255:20:24:0/1:33 +chr11 64702230 . AGGGG AGG 10.8 . INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=4,1,2,0;MQ=50;PV4=1,0.37,1,0.25 PL:DP:SP:GT:GQ 48,0,150:7:0:0/1:51 +chr11 64703163 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 64705895 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 64727256 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 64735825 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 64739387 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 64740637 . G GCACTTGACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 64795844 . TAGAAT TAGAATGACACAGAAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 64799726 . ACT A 3.25 . INDEL;DP=16;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 64799729 . GT GTGAAGAT 11.8 . INDEL;DP=16;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 64801995 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 64806067 . CA CAGA 22.5 . INDEL;DP=18;AF1=0.5;CI95=0.5,0.5;DP4=6,3,0,2;MQ=50;PV4=0.18,1,1,0.01 PL:DP:SP:GT:GQ 60,0,255:11:7:0/1:63 +chr11 64807131 . C T 6.98 . DP=14;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,4,0;MQ=49;PV4=1,0.45,0.25,1 PL:DP:SP:GT:GQ 36,0,50:8:0:0/1:39 +chr11 64811491 . GCA GCACCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 64813286 . A ACGCTATATAGCGAAT 99 . INDEL;DP=18;AF1=1;CI95=1,1;DP4=0,0,12,1;MQ=50 PL:DP:SP:GT:GQ 255,39,0:13:0:1/1:99 +chr11 64825507 . GC GCCTTC 7.35 . INDEL;DP=8;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,34:2:0:0/1:37 +chr11 64846929 . G A 50 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=4,0,0,8;MQ=48;PV4=0.002,0.0036,0.0079,1 PL:DP:SP:GT:GQ 80,0,71:12:27:0/1:73 +chr11 64850798 . CAGA CAGAAGTGAGA 7.35 . INDEL;DP=7;AF1=0.5002;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,31:2:0:0/1:34 +chr11 64851453 . CTT CT 76 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=50 PL:DP:SP:GT:GQ 116,12,0:4:0:1/1:72 +chr11 64854794 . G T 9.52 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=9,2,0,4;MQ=49;PV4=0.011,0.00028,0.00027,0.46 PL:DP:SP:GT:GQ 39,0,255:15:20:0/1:42 +chr11 64854868 . C T 3.01 . DP=15;AF1=0.4997;CI95=0.5,0.5;DP4=0,3,0,2;MQ=49;PV4=1,0.0087,0.056,1 PL:DP:SP:GT:GQ 30,0,111:5:0:0/1:33 +chr11 64874369 . ga gACTCCCa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 64874612 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 64880743 . C T 25 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=3,0,2,1;MQ=48;PV4=1,0.13,0.011,1 PL:DP:SP:GT:GQ 55,0,86:6:0:0/1:58 +chr11 64888116 . G C 22 . DP=18;AF1=0.5016;CI95=0.5,0.5;DP4=2,0,4,0;MQ=49;PV4=1,1,0.21,1 PL:DP:SP:GT:GQ 52,0,22:6:0:0/1:25 +chr11 64888882 . C G 11.3 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=49;PV4=1,0.11,0.19,1 PL:DP:SP:GT:GQ 41,0,59:6:0:0/1:44 +chr11 64890987 . ac aCTCGCCGc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 64898357 . GCC GCCC 99 . INDEL;DP=10;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=50 PL:DP:SP:GT:GQ 154,24,0:8:0:1/1:96 +chr11 64904380 . t tGAGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 65046384 . C G 9.52 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,1,0,4;MQ=48;PV4=0.14,0.014,0.29,0.093 PL:DP:SP:GT:GQ 39,0,101:7:8:0/1:42 +chr11 65049811 . A C 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 65057450 . t tCTATCC 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 65060718 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 65062965 . GG GGTG 3.25 . INDEL;DP=15;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,0.42 PL:DP:SP:GT:GQ 38,0,101:4:0:0/1:41 +chr11 65062970 . AA AAGCTA 5.08 . INDEL;DP=14;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.37 PL:DP:SP:GT:GQ 41,0,47:3:0:0/1:43 +chr11 65088509 . G T 7.8 . DP=40;AF1=0.5;CI95=0.5,0.5;DP4=10,4,0,6;MQ=48;PV4=0.011,0.09,0.0034,1 PL:DP:SP:GT:GQ 37,0,229:20:20:0/1:40 +chr11 65107762 . CC CCCGC 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr11 65130063 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 65130276 . g gTGCCGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 65144075 . T C 99 . DP=42;AF1=1;CI95=1,1;DP4=1,0,5,31;MQ=48;PV4=0.16,0.38,0.16,1 PL:DP:SP:GT:GQ 255,83,0:37:0:1/1:99 +chr11 65158939 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 65178620 . G A 99 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=43 PL:DP:SP:GT:GQ 151,15,0:5:0:1/1:75 +chr11 65192727 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 65259203 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 65266514 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 65267927 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 65268466 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 65279813 . tg tGTCAg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 65283997 . ag aGCCGg 7.35 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,43:2:0:0/1:43 +chr11 65292983 . CC CCGC 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.27 PL:DP:SP:GT:GQ 41,0,54:3:0:0/1:44 +chr11 65308254 . CAG C 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 65308777 . C T 99 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=1,7,0,13;MQ=46;PV4=0.38,0.037,4.1e-06,0.35 PL:DP:SP:GT:GQ 174,0,199:21:0:0/1:99 +chr11 65315357 . CCAC CCACAC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 65319751 . G A 78 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,8;MQ=47;PV4=1,0.017,0.034,0.17 PL:DP:SP:GT:GQ 108,0,67:11:0:0/1:70 +chr11 65321316 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 65324427 . GT GTCGAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 65327353 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 65337705 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 65338034 . A G 58 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=4,3,3,2;MQ=48;PV4=1,0.0062,0.023,0.21 PL:DP:SP:GT:GQ 88,0,220:12:0:0/1:91 +chr11 65338181 . G A 3.54 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=1,1,0,1;MQ=48;PV4=1,0.052,0,1 PL:DP:SP:GT:GQ 31,0,91:3:0:0/1:34 +chr11 65341522 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 65349849 . A T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 65373621 . A G 9.31 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr11 65380765 . T A 4.13 . DP=30;AF1=0.4998;CI95=0.5,0.5;DP4=6,9,0,5;MQ=49;PV4=0.26,0.0067,0.07,1 PL:DP:SP:GT:GQ 32,0,255:20:6:0/1:35 +chr11 65382545 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 65410298 . a aTC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 65422084 . A C 4.13 . DP=18;AF1=0.4998;CI95=0.5,0.5;DP4=3,4,0,3;MQ=48;PV4=0.47,1,0.4,1 PL:DP:SP:GT:GQ 32,0,101:10:3:0/1:35 +chr11 65425185 . ct cTAATCGATt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 65427346 . G A 6.2 . DP=15;AF1=0.4999;CI95=0.5,0.5;DP4=0,9,0,4;MQ=50;PV4=1,5.9e-05,0.0045,1 PL:DP:SP:GT:GQ 35,0,204:13:0:0/1:38 +chr11 65429769 . C T 4.13 . DP=6;AF1=0.4998;CI95=0.5,0.5;DP4=0,3,0,2;MQ=49;PV4=1,0.14,0.056,1 PL:DP:SP:GT:GQ 32,0,74:5:0:0/1:35 +chr11 65443238 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 65454706 . A C 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 65480768 . A G 44.8 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=42 PL:DP:SP:GT:GQ 76,6,0:2:0:1/1:49 +chr11 65480791 . A G 15.9 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=44 PL:DP:SP:GT:GQ 47,6,0:2:0:1/1:49 +chr11 65481166 . T C 62 . DP=31;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=49 PL:DP:SP:GT:GQ 95,24,0:8:0:1/1:96 +chr11 65483941 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 65494987 . C T 53.1 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=48 PL:DP:SP:GT:GQ 86,18,0:6:0:1/1:90 +chr11 65495176 . AC ACGC 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,1;MQ=50;PV4=1,1,1,0.41 PL:DP:SP:GT:GQ 38,0,71:4:0:0/1:41 +chr11 65495331 . G GGCA 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,1;MQ=50;PV4=1,1,1,0.2 PL:DP:SP:GT:GQ 41,0,62:3:0:0/1:44 +chr11 65513062 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 65543325 . actc aCTCTCctc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 65553047 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 65570291 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 65627583 . C CCAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 65627976 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 65628469 . CAC CACAAAC 12.7 . INDEL;DP=7;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 65632262 . G T 99 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=3,11,3,15;MQ=49;PV4=1,2.5e-08,0.0074,1 PL:DP:SP:GT:GQ 163,0,255:32:0:0/1:99 +chr11 65633465 . G A 8.64 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,5,5,0;MQ=48;PV4=0.0079,0.088,0.2,0.36 PL:DP:SP:GT:GQ 38,0,96:10:21:0/1:41 +chr11 65635693 . A C 6.98 . DP=16;AF1=0.4999;CI95=0.5,0.5;DP4=3,1,4,0;MQ=46;PV4=1,0.035,0.053,1 PL:DP:SP:GT:GQ 36,0,127:8:0:0/1:39 +chr11 65636053 . T C 99 . DP=21;AF1=1;CI95=1,1;DP4=1,0,14,4;MQ=45;PV4=1,1,0.011,1 PL:DP:SP:GT:GQ 255,38,0:19:0:1/1:99 +chr11 65637397 . AGT AGTGGAGTGT 5.08 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,1,0;MQ=50;PV4=0.33,0,1,1 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr11 65637399 . TT TTTCT 5.08 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,1,0;MQ=50;PV4=0.33,1,1,0.33 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr11 65637417 . CATG C 4.42 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 65637427 . CC CCGTAC 3.25 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,83:4:0:0/1:41 +chr11 65643255 . ccact c 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 65646288 . A C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 65649774 . A G 22.1 . DP=44;AF1=0.504;CI95=0.5,0.5;DP4=0,1,2,2;MQ=48;PV4=1,0.072,0.34,0.16 PL:DP:SP:GT:GQ 52,0,18:5:0:0/1:21 +chr11 65649984 . T C 99 . DP=41;AF1=0.5;CI95=0.5,0.5;DP4=10,17,4,9;MQ=49;PV4=1,4.1e-07,4.6e-11,1 PL:DP:SP:GT:GQ 160,0,255:40:0:0/1:99 +chr11 65655259 . gcc gCCcc 23.5 . INDEL;DP=21;AF1=0.5;CI95=0.5,0.5;DP4=0,16,0,3;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 61,0,217:19:0:0/1:64 +chr11 65656164 . GGAG GGAGAG 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 65664346 . T C 21 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=50 PL:DP:SP:GT:GQ 53,9,0:3:0:1/1:63 +chr11 65680662 . G GGGGCTTA 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 65681493 . gca gCAGCTATTAca 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 65685225 . T C 3.02 . DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 65708124 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 65732651 . G A 32.3 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=49 PL:DP:SP:GT:GQ 65,15,0:5:0:1/1:75 +chr11 65732800 . T C 4.61 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 65733289 . G A 20 . DP=34;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=50 PL:DP:SP:GT:GQ 52,9,0:3:0:1/1:63 +chr11 65734444 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 65744421 . C T 19.6 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=50 PL:DP:SP:GT:GQ 52,12,0:4:0:1/1:72 +chr11 65746653 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 65765682 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 65765777 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 65767153 . A G 21.5 . DP=23;AF1=0.5554;CI95=0.5,1;DP4=1,0,1,3;MQ=47;PV4=0.4,1,0.11,1 PL:DP:SP:GT:GQ 51,0,7:5:0:0/1:10 +chr11 65769998 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 65771050 . TCACTGAGCACTGAGCA TCACTGAGCA 99 . INDEL;DP=16;AF1=0.5;CI95=0.5,0.5;DP4=2,0,6,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 158,0,44:8:0:0/1:47 +chr11 65771060 . CTGAGCAG C 20.5 . INDEL;DP=18;AF1=0.5;CI95=0.5,0.5;DP4=4,1,2,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 58,0,141:7:0:0/1:61 +chr11 65771203 . G A 4.77 . DP=10;AF1=0.4999;CI95=0.5,0.5;DP4=4,1,0,3;MQ=46;PV4=0.14,0.037,1,1 PL:DP:SP:GT:GQ 33,0,132:8:8:0/1:36 +chr11 65783572 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 65788072 . C T 99 . DP=14;AF1=1;CI95=0.5,1;DP4=1,0,5,5;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 186,10,0:11:0:1/1:60 +chr11 65790810 . G A 79.1 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=47 PL:DP:SP:GT:GQ 112,18,0:6:0:1/1:90 +chr11 65792968 . G A 3.41 . DP=26;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=50 PL:DP:SP:GT:GQ 32,6,0:2:0:1/1:49 +chr11 65793454 . C T 27.5 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=49 PL:DP:SP:GT:GQ 60,12,0:4:0:1/1:72 +chr11 65793797 . G A 99 . DP=75;AF1=1;CI95=1,1;DP4=0,1,29,32;MQ=44;PV4=1,1,0.0037,1 PL:DP:SP:GT:GQ 255,169,0:62:0:1/1:99 +chr11 65793874 . CAAAA CAAA 98.5 . INDEL;DP=37;AF1=1;CI95=1,1;DP4=0,1,1,20;MQ=50;PV4=1,0.0058,1,1 PL:DP:SP:GT:GQ 139,41,0:22:0:1/1:99 +chr11 65793880 . AG A 68.5 . INDEL;DP=37;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,8;MQ=50;PV4=1,0.23,1,1 PL:DP:SP:GT:GQ 106,0,107:14:0:0/1:99 +chr11 65810490 . C T 3.54 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,1,0;MQ=48;PV4=1,0.096,0,1 PL:DP:SP:GT:GQ 31,0,83:3:0:0/1:34 +chr11 65824472 . C T 33.5 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=49 PL:DP:SP:GT:GQ 66,12,0:4:0:1/1:72 +chr11 65825951 . T A 21.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 53,6,0:2:0:1/1:49 +chr11 65832786 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 65835853 . C G 4.81 . DP=5;AF1=0.5079;CI95=0.5,0.5;DP4=0,1,0,2;MQ=49;PV4=1,0.33,0.17,1 PL:DP:SP:GT:GQ 33,0,15:3:0:0/1:18 +chr11 65838839 . TA TATCCGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 65874761 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 65881528 . T TGAC 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr11 65928468 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 65932268 . GT GTCTCTTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 65946771 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 65976189 . a aCGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 65983522 . A G 99 . DP=18;AF1=1;CI95=1,1;DP4=0,0,15,0;MQ=46 PL:DP:SP:GT:GQ 150,45,0:15:0:1/1:99 +chr11 65995028 . T G 8.65 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,2;MQ=47;PV4=1,1,0.065,1 PL:DP:SP:GT:GQ 38,0,35:4:0:0/1:36 +chr11 65996632 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 66030262 . A T 4.13 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 66031859 . C T 6.2 . DP=23;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,3,1;MQ=48;PV4=0.4,0.13,0.14,1 PL:DP:SP:GT:GQ 35,0,52:6:4:0/1:38 +chr11 66040053 . A G 8.65 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 66048856 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 66083129 . T C 63 . DP=13;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=49 PL:DP:SP:GT:GQ 96,24,0:8:0:1/1:96 +chr11 66083782 . G A 99 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,1,4;MQ=45 PL:DP:SP:GT:GQ 140,15,0:5:0:1/1:75 +chr11 66084056 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 66099987 . C T 47.1 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=49 PL:DP:SP:GT:GQ 80,18,0:6:0:1/1:90 +chr11 66100152 . T C 31 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=47 PL:DP:SP:GT:GQ 63,9,0:3:0:1/1:63 +chr11 66101974 . C T 90.5 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=44 PL:DP:SP:GT:GQ 123,12,0:4:0:1/1:72 +chr11 66107674 . A G 99 . DP=32;AF1=1;CI95=1,1;DP4=0,1,4,21;MQ=44;PV4=1,1,6.8e-05,1 PL:DP:SP:GT:GQ 255,55,0:26:0:1/1:99 +chr11 66108660 . C T 84.4 . DP=13;AF1=1;CI95=0.5,1;DP4=0,1,8,3;MQ=49;PV4=0.33,0.22,0.38,1 PL:DP:SP:GT:GQ 117,13,0:12:0:1/1:65 +chr11 66119050 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 66157797 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 66187168 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 66188761 . G T 93.5 . DP=39;AF1=1;CI95=0.5,1;DP4=1,0,5,5;MQ=49;PV4=1,0.21,0.24,1 PL:DP:SP:GT:GQ 125,7,0:11:0:1/1:57 +chr11 66203056 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 66209301 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 66227298 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 66240882 . T C 99 . DP=16;AF1=1;CI95=1,1;DP4=0,0,4,11;MQ=45 PL:DP:SP:GT:GQ 255,45,0:15:0:1/1:99 +chr11 66241359 . T A 3.54 . DP=10;AF1=0.4998;CI95=0.5,0.5;DP4=1,3,1,2;MQ=48;PV4=1,0.47,0.052,0.097 PL:DP:SP:GT:GQ 31,0,45:7:0:0/1:34 +chr11 66254085 . G T 99 . DP=23;AF1=1;CI95=1,1;DP4=0,0,7,13;MQ=49 PL:DP:SP:GT:GQ 209,60,0:20:0:1/1:99 +chr11 66260976 . C CTCTA 5.08 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr11 66272142 . A G 45 . DP=37;AF1=0.504;CI95=0.5,0.5;DP4=1,0,2,4;MQ=49;PV4=0.43,0.0045,1,1 PL:DP:SP:GT:GQ 75,0,18:7:0:0/1:21 +chr11 66272237 . G A 99 . DP=37;AF1=1;CI95=1,1;DP4=0,0,9,27;MQ=48 PL:DP:SP:GT:GQ 255,108,0:36:0:1/1:99 +chr11 66282095 . G A 99 . DP=53;AF1=1;CI95=1,1;DP4=0,0,29,16;MQ=43 PL:DP:SP:GT:GQ 255,135,0:45:0:1/1:99 +chr11 66283257 . C T 80.1 . DP=22;AF1=1;CI95=1,1;DP4=0,0,3,4;MQ=49 PL:DP:SP:GT:GQ 113,21,0:7:0:1/1:84 +chr11 66283453 . T G 6.79 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr11 66283456 . AAA AAACTAGAA 7.37 . INDEL;DP=7;AF1=0.5025;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,20:2:0:0/1:23 +chr11 66288490 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 66288733 . G C 99 . DP=34;AF1=1;CI95=1,1;DP4=1,0,26,1;MQ=48;PV4=1,1,0.19,1 PL:DP:SP:GT:GQ 190,69,0:28:0:1/1:99 +chr11 66293779 . T C 90.5 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=44 PL:DP:SP:GT:GQ 123,12,0:4:0:1/1:72 +chr11 66297363 . C T 48.3 . DP=13;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=48 PL:DP:SP:GT:GQ 81,15,0:5:0:1/1:75 +chr11 66298594 . C T 3.98 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 33,6,0:2:0:1/1:49 +chr11 66314739 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 66322156 . C CAG 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 66323946 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 66325907 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 66331458 . A G 47.3 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,4,1;MQ=50 PL:DP:SP:GT:GQ 80,15,0:5:0:1/1:75 +chr11 66331657 . T G 7.19 . DP=6;AF1=0.5335;CI95=0.5,1;DP4=0,1,0,2;MQ=48;PV4=1,1,0.2,0.18 PL:DP:SP:GT:GQ 36,0,9:3:0:0/1:12 +chr11 66333991 . A G 19.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 51,6,0:2:0:1/1:49 +chr11 66347520 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 66360505 . C CCCA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 66373123 . G C 3.01 . DP=10;AF1=0.4997;CI95=0.5,0.5;DP4=0,2,1,1;MQ=49;PV4=1,0.00077,0.048,0.024 PL:DP:SP:GT:GQ 30,0,79:4:0:0/1:33 +chr11 66384487 . T A 24.8 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=45 PL:DP:SP:GT:GQ 56,6,0:2:0:1/1:49 +chr11 66456389 . GC GCTC 3.8 . INDEL;DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 39,0,38:2:0:0/1:38 +chr11 66458980 . G A 99 . DP=11;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=44 PL:DP:SP:GT:GQ 184,24,0:8:0:1/1:96 +chr11 66460527 . C T 70.1 . DP=17;AF1=1;CI95=0.5,1;DP4=0,0,5,1;MQ=48 PL:DP:SP:GT:GQ 103,18,0:6:0:1/1:90 +chr11 66467204 . AG AGTG 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.13 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr11 66467901 . G A 7.82 . DP=3;AF1=0.5031;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,19:2:0:0/1:22 +chr11 66473444 . A C 4.77 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,44:2:0:0/1:36 +chr11 66475533 . A T 20 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=5,0,4,0;MQ=49;PV4=1,0.15,0.18,1 PL:DP:SP:GT:GQ 50,0,90:9:0:0/1:53 +chr11 66481772 . C A 31 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=5,0,5,0;MQ=48;PV4=1,0.2,0.0053,1 PL:DP:SP:GT:GQ 61,0,90:10:0:0/1:64 +chr11 66487711 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 66490525 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 66508396 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 66512585 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 66565022 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 66577446 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 66585452 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 66593169 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 66617286 . G A 4.77 . DP=21;AF1=0.4999;CI95=0.5,0.5;DP4=2,10,2,1;MQ=48;PV4=0.15,0.12,0.058,1 PL:DP:SP:GT:GQ 33,0,232:15:8:0/1:36 +chr11 66630072 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 66638798 . CG C 6.55 . INDEL;DP=24;AF1=0.5;CI95=0.5,0.5;DP4=4,5,3,0;MQ=50;PV4=0.2,0.4,1,0.094 PL:DP:SP:GT:GQ 43,0,185:12:7:0/1:46 +chr11 66652340 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 66653699 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 66671688 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 66676220 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 66680058 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 66686351 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 66718028 . ACAAGC A 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 66765565 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 66769631 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 66797711 . G C 3.98 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 33,6,0:2:0:1/1:49 +chr11 66807168 . A G 6.79 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr11 66813634 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 66833757 . G C 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 66834165 . G A 7.8 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,1,3,0;MQ=47;PV4=0.25,0.0063,0.037,1 PL:DP:SP:GT:GQ 37,0,40:4:0:0/1:38 +chr11 66837965 . T C 88.1 . DP=8;AF1=1;CI95=1,1;DP4=0,0,4,3;MQ=48 PL:DP:SP:GT:GQ 121,21,0:7:0:1/1:84 +chr11 66911082 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 66959675 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 67016162 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 67021345 . GG GGGGCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 67034866 . TGGGG TGG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 67050543 . G A 7.8 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=4,0,3,0;MQ=49;PV4=1,0.25,0.031,0.12 PL:DP:SP:GT:GQ 37,0,69:7:0:0/1:40 +chr11 67051201 . C T 5.46 . DP=8;AF1=0.4999;CI95=0.5,0.5;DP4=1,1,0,2;MQ=47;PV4=1,0.25,0.15,1 PL:DP:SP:GT:GQ 34,0,60:4:0:0/1:37 +chr11 67051594 . C CTGTGGCA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 67056258 . AGTGG AG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 67059251 . GC GCGTCC 7.35 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 67067228 . CAG C 5.8 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 67067650 . C T 3.01 . DP=20;AF1=0.4997;CI95=0.5,0.5;DP4=0,5,0,4;MQ=49;PV4=1,0.15,0.0028,1 PL:DP:SP:GT:GQ 30,0,75:9:0:0/1:33 +chr11 67068846 . C T 12.3 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=4,0,0,5;MQ=48;PV4=0.0079,0.00046,0.029,1 PL:DP:SP:GT:GQ 42,0,118:9:21:0/1:45 +chr11 67075404 . CAAA CA 26.5 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=2,1,0,3;MQ=50;PV4=0.4,1,1,0.39 PL:DP:SP:GT:GQ 64,0,60:6:4:0/1:62 +chr11 67077229 . G A 4.77 . DP=3;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,1,0;MQ=48;PV4=1,1,0,0.15 PL:DP:SP:GT:GQ 33,0,66:3:0:0/1:36 +chr11 67117576 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 67119345 . CCT CCTCT 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,39:2:0:0/1:41 +chr11 67119520 . ACCCC ACC 8.19 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 67123661 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 67127738 . a aCAGGGCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 67129252 . c cGACGAA 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 67130177 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 67135006 . A T 99 . DP=12;AF1=1;CI95=1,1;DP4=0,0,1,7;MQ=43 PL:DP:SP:GT:GQ 197,24,0:8:0:1/1:96 +chr11 67141545 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 67160961 . A G 99 . DP=27;AF1=1;CI95=0.5,1;DP4=1,0,21,0;MQ=46;PV4=1,0.00058,0.024,0.13 PL:DP:SP:GT:GQ 152,16,0:22:0:1/1:80 +chr11 67163628 . A G 99 . DP=70;AF1=1;CI95=1,1;DP4=1,0,30,29;MQ=44;PV4=1,1,0.00046,1 PL:DP:SP:GT:GQ 255,162,0:60:0:1/1:99 +chr11 67164791 . T C 6.79 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr11 67166337 . G A 53.8 . DP=44;AF1=1;CI95=0.5,1;DP4=0,2,1,10;MQ=49;PV4=1,1,0.23,1 PL:DP:SP:GT:GQ 85,6,0:13:0:1/1:49 +chr11 67172911 . C T 99 . DP=13;AF1=1;CI95=1,1;DP4=0,0,4,7;MQ=46 PL:DP:SP:GT:GQ 217,33,0:11:0:1/1:99 +chr11 67174441 . G A 3.54 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=2,1,1,0;MQ=48;PV4=1,1,0,0.25 PL:DP:SP:GT:GQ 31,0,79:4:0:0/1:34 +chr11 67177279 . G A 13.9 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr11 67179801 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 67192370 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 67196544 . C G 99 . DP=12;AF1=1;CI95=0.5,1;DP4=0,1,4,6;MQ=45;PV4=1,1,0.016,1 PL:DP:SP:GT:GQ 201,7,0:11:0:1/1:57 +chr11 67196859 . C CA 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 67200819 . C T 41.5 . DP=30;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=48 PL:DP:SP:GT:GQ 74,12,0:4:0:1/1:72 +chr11 67201615 . C T 28 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=49 PL:DP:SP:GT:GQ 60,9,0:3:0:1/1:63 +chr11 67202044 . G A 31.3 . DP=6;AF1=0.543;CI95=0.5,1;DP4=1,0,4,0;MQ=48;PV4=1,1,0.16,1 PL:DP:SP:GT:GQ 61,0,8:5:0:0/1:11 +chr11 67202156 . C T 56 . DP=17;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=48 PL:DP:SP:GT:GQ 89,24,0:8:0:1/1:96 +chr11 67218123 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 67234895 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 67254464 . A C 23 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=1,9,6,0;MQ=48;PV4=0.00087,0.23,0.057,1 PL:DP:SP:GT:GQ 53,0,156:16:31:0/1:56 +chr11 67256776 . C T 7.09 . DP=2;AF1=0.5162;CI95=0.5,0.5;DP4=1,0,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,12:2:0:0/1:15 +chr11 67257823 . C A 76.1 . DP=39;AF1=1;CI95=1,1;DP4=0,0,4,3;MQ=49 PL:DP:SP:GT:GQ 109,21,0:7:0:1/1:84 +chr11 67261497 . G T 3.55 . DP=14;AF1=0.5011;CI95=0.5,0.5;DP4=0,2,1,1;MQ=47;PV4=1,1,1,0.088 PL:DP:SP:GT:GQ 31,0,23:4:0:0/1:25 +chr11 67261507 . C T 8.83 . DP=9;AF1=0.5263;CI95=0.5,1;DP4=0,1,0,2;MQ=48;PV4=1,1,0.17,0.33 PL:DP:SP:GT:GQ 38,0,10:3:0:0/1:13 +chr11 67262845 . C A 3.54 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=3,0,1,0;MQ=48;PV4=1,0.023,0,1 PL:DP:SP:GT:GQ 31,0,114:4:0:0/1:34 +chr11 67263144 . C T 33.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=47 PL:DP:SP:GT:GQ 66,12,0:4:0:1/1:72 +chr11 67263767 . A G 6.02 . DP=22;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr11 67264679 . C T 23 . DP=7;AF1=0.5002;CI95=0.5,0.5;DP4=0,1,3,0;MQ=46;PV4=0.25,0.0043,1,0.29 PL:DP:SP:GT:GQ 53,0,31:4:0:0/1:34 +chr11 67265814 . C A 33.5 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=49 PL:DP:SP:GT:GQ 66,12,0:4:0:1/1:72 +chr11 67268001 . C CTCT 7.62 . INDEL;DP=2;AF1=0.543;CI95=0.5,1;DP4=0,1,0,1;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,8:2:0:0/1:11 +chr11 67274147 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 67279327 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 67289801 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 67297743 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 67313564 . ga gAAAAAa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 67352689 . A G 99 . DP=47;AF1=1;CI95=1,1;DP4=0,0,6,32;MQ=45 PL:DP:SP:GT:GQ 255,114,0:38:0:1/1:99 +chr11 67352821 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 67353970 . T C 97 . DP=12;AF1=1;CI95=1,1;DP4=0,0,8,1;MQ=47 PL:DP:SP:GT:GQ 130,27,0:9:0:1/1:99 +chr11 67400622 . G A 70.1 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,1,5;MQ=48 PL:DP:SP:GT:GQ 103,18,0:6:0:1/1:90 +chr11 67402744 . G A 25.5 . DP=17;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=49 PL:DP:SP:GT:GQ 58,12,0:4:0:1/1:72 +chr11 67422511 . ga gAACCCGCACCa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 67430762 . T C 51 . DP=11;AF1=0.501;CI95=0.5,0.5;DP4=1,1,3,2;MQ=49;PV4=1,1,0.057,1 PL:DP:SP:GT:GQ 81,0,24:7:0:0/1:27 +chr11 67433168 . GC GCTC 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.36 PL:DP:SP:GT:GQ 38,0,75:3:0:0/1:41 +chr11 67434416 . C A 48.5 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=49 PL:DP:SP:GT:GQ 81,12,0:4:0:1/1:72 +chr11 67438961 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 67445689 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 67450364 . A G 86 . DP=17;AF1=1;CI95=1,1;DP4=0,1,5,9;MQ=15;PV4=1,1,1,1 PL:DP:SP:GT:GQ 119,33,0:15:0:1/1:99 +chr11 67453186 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 67455551 . t tCTCTC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 67470817 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 67508202 . T TGAGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 67513001 . A T 3.02 . DP=2;AF1=0.5023;CI95=0.5,0.5;DP4=0,1,0,1;MQ=35;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,20:2:0:0/1:23 +chr11 67519937 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 67553681 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 67554590 . A G 31 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=32 PL:DP:SP:GT:GQ 63,9,0:3:0:1/1:63 +chr11 67559770 . C A 99 . DP=18;AF1=0.5207;CI95=0.5,1;DP4=2,0,5,9;MQ=38;PV4=0.17,0.022,0.061,1 PL:DP:SP:GT:GQ 131,0,11:16:8:0/1:14 +chr11 67564197 . T C 51.1 . DP=10;AF1=1;CI95=1,1;DP4=0,0,3,4;MQ=17 PL:DP:SP:GT:GQ 84,21,0:7:0:1/1:84 +chr11 67565172 . C T 7.59 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=22 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr11 67569004 . C CTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 67574625 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 67587812 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 67660505 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 67673027 . A G 57 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=45 PL:DP:SP:GT:GQ 89,9,0:3:0:1/1:63 +chr11 67714592 . GG GGAAG 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 67764735 . GC GCC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 67769952 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 67789293 . GC GCC 23.2 . INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 62,6,0:2:0:1/1:49 +chr11 67799731 . C G 3.23 . DP=47;AF1=0.5552;CI95=0.5,1;DP4=0,1,0,2;MQ=50;PV4=1,1,0.33,1 PL:DP:SP:GT:GQ 30,0,7:3:0:0/1:10 +chr11 67800128 . T A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 67804442 . T A 8.44 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr11 67808552 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 67814979 . G C 99 . DP=15;AF1=1;CI95=1,1;DP4=0,0,1,13;MQ=47 PL:DP:SP:GT:GQ 172,42,0:14:0:1/1:99 +chr11 67818331 . C G 14.2 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,4;MQ=49;PV4=1,1,0.00017,1 PL:DP:SP:GT:GQ 44,0,54:10:0:0/1:47 +chr11 67821912 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 67842369 . C T 82 . DP=11;AF1=1;CI95=1,1;DP4=0,0,0,10;MQ=48 PL:DP:SP:GT:GQ 115,30,0:10:0:1/1:99 +chr11 67888334 . CG CGAGTG 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,1;MQ=50;PV4=1,1,1,0.17 PL:DP:SP:GT:GQ 41,0,91:3:0:0/1:44 +chr11 67915875 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 67925319 . A G 4.13 . DP=18;AF1=0.4998;CI95=0.5,0.5;DP4=4,4,2,1;MQ=49;PV4=1,0.15,0.0082,1 PL:DP:SP:GT:GQ 32,0,145:11:0:0/1:35 +chr11 67925352 . A T 10.4 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=5,7,5,0;MQ=49;PV4=0.044,0.1,4.7e-08,1 PL:DP:SP:GT:GQ 40,0,219:17:14:0/1:43 +chr11 67938443 . A ATATATTT 7.49 . INDEL;DP=14;AF1=0.5207;CI95=0.5,1;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,11:2:0:0/1:14 +chr11 67938946 . G GNNNNN 12.7 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 67938947 . G A 8.44 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr11 67957518 . A T 61.3 . DP=60;AF1=1;CI95=0.5,1;DP4=0,0,3,2;MQ=48 PL:DP:SP:GT:GQ 94,15,0:5:0:1/1:75 +chr11 67986700 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 68022244 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 68022352 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 68029887 . G A 73.1 . DP=20;AF1=1;CI95=0.5,1;DP4=0,0,4,2;MQ=48 PL:DP:SP:GT:GQ 106,18,0:6:0:1/1:90 +chr11 68084592 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 68097178 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 68115636 . A C 11.3 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=11,0,0,4;MQ=48;PV4=0.00073,0.018,0.031,0.14 PL:DP:SP:GT:GQ 41,0,192:15:31:0/1:44 +chr11 68138686 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 68139067 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 68169136 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 68171013 . T C 9.49 . DP=32;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 41,9,0:3:0:1/1:63 +chr11 68177510 . C T 99 . DP=46;AF1=1;CI95=1,1;DP4=1,1,12,21;MQ=48;PV4=1,0.0096,0.19,1 PL:DP:SP:GT:GQ 204,42,0:35:0:1/1:99 +chr11 68180350 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 68181088 . G A 3.01 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,2,0;MQ=49;PV4=1,0.045,0.21,1 PL:DP:SP:GT:GQ 30,0,50:4:0:0/1:33 +chr11 68190993 . C A 42 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=6,0,0,7;MQ=49;PV4=0.00058,5.5e-09,0.0087,1 PL:DP:SP:GT:GQ 72,0,167:13:32:0/1:75 +chr11 68196724 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 68196961 . C T 74.1 . DP=24;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=47 PL:DP:SP:GT:GQ 107,21,0:7:0:1/1:84 +chr11 68201040 . G A 99 . DP=21;AF1=1;CI95=1,1;DP4=1,0,6,5;MQ=46;PV4=1,1,0.15,1 PL:DP:SP:GT:GQ 201,21,0:12:0:1/1:84 +chr11 68204307 . G T 7.11 . DP=6;AF1=0.5206;CI95=0.5,1;DP4=1,0,2,0;MQ=45;PV4=1,1,1,0.33 PL:DP:SP:GT:GQ 36,0,11:3:0:0/1:14 +chr11 68206980 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 68224370 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 68263111 . c cCTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 68271182 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 68273501 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 68315798 . C A 55.1 . DP=19;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=48 PL:DP:SP:GT:GQ 88,18,0:6:0:1/1:90 +chr11 68326236 . C T 49 . DP=8;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=50 PL:DP:SP:GT:GQ 82,24,0:8:0:1/1:96 +chr11 68330866 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 68334726 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 68353698 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 68358106 . CTTTTATTTT CTTTT 99 . INDEL;DP=14;AF1=1;CI95=0.5,1;DP4=1,0,7,0;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 182,9,0:8:0:1/1:63 +chr11 68358111 . A G 54.5 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=46 PL:DP:SP:GT:GQ 87,12,0:4:0:1/1:72 +chr11 68377602 . A C 27.8 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:DP:SP:GT:GQ 59,6,0:2:0:1/1:49 +chr11 68385579 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 68420798 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 68421416 . G A 11.1 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 +chr11 68422867 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 68425034 . A T 13.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr11 68432689 . GC GCAGACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 68435261 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 68435408 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 68438092 . GCTTT G 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 68451350 . GG GGTAG 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 68453571 . T TACTG 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 68455596 . G T 26 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,6;MQ=48;PV4=1,1,0.085,1 PL:DP:SP:GT:GQ 56,0,41:10:0:0/1:44 +chr11 68456227 . AGCG A 4.42 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=49;PV4=1,1,1,0.46 PL:DP:SP:GT:GQ 40,0,58:3:0:0/1:43 +chr11 68456410 . T C 17.1 . DP=16;AF1=0.5064;CI95=0.5,0.5;DP4=0,1,0,3;MQ=49;PV4=1,0.24,0.24,1 PL:DP:SP:GT:GQ 47,0,16:4:0:0/1:19 +chr11 68476011 . A G 35.1 . DP=6;AF1=0.5064;CI95=0.5,0.5;DP4=0,1,0,3;MQ=48;PV4=1,1,0.25,1 PL:DP:SP:GT:GQ 65,0,16:4:0:0/1:19 +chr11 68477571 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 68478511 . T A 16.1 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=7,3,0,5;MQ=49;PV4=0.026,0.021,0.019,0.2 PL:DP:SP:GT:GQ 46,0,217:15:16:0/1:49 +chr11 68479039 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 68490121 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 68515544 . T TTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 68530257 . C T 99 . DP=30;AF1=1;CI95=1,1;DP4=0,0,3,21;MQ=47 PL:DP:SP:GT:GQ 210,72,0:24:0:1/1:99 +chr11 68533850 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 68548483 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 68552486 . G A 67 . DP=31;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=48 PL:DP:SP:GT:GQ 100,24,0:8:0:1/1:96 +chr11 68560798 . G A 8.64 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,5,3,0;MQ=48;PV4=0.17,0.02,0.0025,0.43 PL:DP:SP:GT:GQ 38,0,199:10:8:0/1:41 +chr11 68581070 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 68588049 . gctg gCTGTctg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 68590049 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 68596626 . TC TCTAGAGAC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 68613019 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 68626844 . c cGAGTCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 68650408 . G T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 68653530 . C A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 68668465 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 68680924 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 68682031 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 68699921 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 68700814 . A T 6.98 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,1,2,0;MQ=48;PV4=0.33,0.03,0.077,0.26 PL:DP:SP:GT:GQ 36,0,41:3:0:0/1:38 +chr11 68703766 . C A 23 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=3,5,0,5;MQ=48;PV4=0.23,0.069,0.023,1 PL:DP:SP:GT:GQ 53,0,179:13:6:0/1:56 +chr11 68722699 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 68723289 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 68724729 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 68731024 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 68748003 . T C 99 . DP=36;AF1=1;CI95=1,1;DP4=1,0,12,16;MQ=49;PV4=0.45,0.043,0.31,1 PL:DP:SP:GT:GQ 216,56,0:29:0:1/1:99 +chr11 68754258 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 68763140 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 68764579 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 68766634 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 68770917 . TGG TGGCGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 68780717 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 68786319 . c cCGAGCACAACG 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 68803807 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 68816745 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 68816801 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 68817652 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 68825037 . A C 42 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=14,2,11,2;MQ=50;PV4=1,6.5e-12,0.03,1 PL:DP:SP:GT:GQ 72,0,255:29:0:0/1:75 +chr11 68829403 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 68840412 . C G 20 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=19,9,7,1;MQ=49;PV4=0.4,0.00077,0.00053,0.13 PL:DP:SP:GT:GQ 50,0,255:36:4:0/1:53 +chr11 68846098 . A G 55 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=0,17,1,20;MQ=50;PV4=1,3.5e-17,0.029,1 PL:DP:SP:GT:GQ 85,0,230:38:0:0/1:88 +chr11 68847932 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 68848989 . AC ACCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 68867181 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 68872325 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 68875589 . G GCTGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 68879969 . AG AGTAATAAAGAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 68893761 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 68894434 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 68916599 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 68961285 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 68979861 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 68991394 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 68992695 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 69000011 . t tCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 69011028 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 69019649 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 69037421 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 69063476 . C T 99 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=8,2,10,2;MQ=47;PV4=1,6.4e-08,0.0021,1 PL:DP:SP:GT:GQ 153,0,255:22:0:0/1:99 +chr11 69071168 . T C 40 . DP=8;AF1=0.5003;CI95=0.5,0.5;DP4=0,2,3,0;MQ=41;PV4=0.1,0.16,1,0.31 PL:DP:SP:GT:GQ 70,0,30:5:10:0/1:33 +chr11 69089473 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 69141569 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 69168198 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 69187360 . g gTTCCTTGGTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 69194489 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 69197083 . C T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 69202292 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 69205417 . C T 9.31 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr11 69224768 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 69231637 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 69239470 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 69247381 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 69269838 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 69297897 . G C 4.77 . DP=2;AF1=0.5002;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,29:2:0:0/1:31 +chr11 69302059 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 69306502 . G A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 69306900 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 69311120 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 69331000 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 69368440 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 69400058 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 69400905 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 69434249 . GGG GGGTAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 69440605 . acc aCCGAGGcc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 69442684 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 69472421 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 69479690 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 69488154 . C A 3.56 . DP=6;AF1=0.503;CI95=0.5,0.5;DP4=0,1,0,5;MQ=50;PV4=1,0,1,1 PL:DP:SP:GT:GQ 31,0,19:6:0:0/1:22 +chr11 69507186 . a aGCTGTGTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 69512143 . GCACT GCACTACACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 69514235 . T G 3.54 . DP=11;AF1=0.4998;CI95=0.5,0.5;DP4=1,4,0,2;MQ=49;PV4=1,0.048,6.4e-06,1 PL:DP:SP:GT:GQ 31,0,168:7:0:0/1:34 +chr11 69519112 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 69532310 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 69534444 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 69535333 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 69544942 . G T 14.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 69552080 . C T 5.46 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,44:2:0:0/1:37 +chr11 69552358 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 69574208 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 69591749 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 69625349 . G T 3.55 . DP=5;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,2,0;MQ=47;PV4=1,0.061,0.23,1 PL:DP:SP:GT:GQ 31,0,26:3:0:0/1:28 +chr11 69625511 . T C 30 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=0,13,0,6;MQ=49;PV4=1,2.9e-07,0.00042,1 PL:DP:SP:GT:GQ 60,0,229:19:0:0/1:63 +chr11 69630470 . C CGAGTAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 69630978 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 69632336 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 69657607 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 69663454 . t tCG 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 69672002 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 69679605 . C CTG 4.42 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 69792182 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 69793275 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 69805353 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 69806451 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 69846111 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 69852055 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 69857990 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 69864654 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 69866690 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 69870256 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 69870261 . A T 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 69912235 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 69932836 . C G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 69937215 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 69967383 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 69979077 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 69996618 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 70004477 . TA TAAACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 70016922 . C T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 70027358 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 70053674 . C A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 70074241 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 70075701 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 70080467 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 70089246 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 70092750 . C CTTT 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 70134802 . t tCTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 70170166 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 70170629 . T G 8.64 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,3;MQ=49;PV4=1,0.16,0.015,1 PL:DP:SP:GT:GQ 38,0,51:5:0:0/1:41 +chr11 70170630 . CA CAAA 3.25 . INDEL;DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,66:4:0:0/1:41 +chr11 70178323 . GT GTGACTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 70201977 . T G 4.77 . DP=26;AF1=0.4999;CI95=0.5,0.5;DP4=0,10,0,4;MQ=49;PV4=1,0.26,0.27,0.046 PL:DP:SP:GT:GQ 33,0,102:14:0:0/1:36 +chr11 70208350 . G A 92 . DP=34;AF1=1;CI95=1,1;DP4=0,0,4,4;MQ=48 PL:DP:SP:GT:GQ 125,24,0:8:0:1/1:96 +chr11 70223538 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 70230980 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 70230998 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 70265975 . T G 4.13 . DP=22;AF1=0.4998;CI95=0.5,0.5;DP4=0,8,0,3;MQ=47;PV4=1,0.14,0.029,0.3 PL:DP:SP:GT:GQ 32,0,139:11:0:0/1:35 +chr11 70290048 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 70325061 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 70327827 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 70332694 . T C 4.13 . DP=22;AF1=0.4998;CI95=0.5,0.5;DP4=6,0,0,6;MQ=49;PV4=0.0022,2.6e-06,0.01,0.34 PL:DP:SP:GT:GQ 32,0,165:12:27:0/1:35 +chr11 70347863 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 70349061 . A G 99 . DP=57;AF1=1;CI95=1,1;DP4=0,1,10,38;MQ=46;PV4=1,1,0.017,1 PL:DP:SP:GT:GQ 255,120,0:49:0:1/1:99 +chr11 70360005 . t tG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 70372508 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 70383582 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 70383896 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 70430236 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 70450393 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 70453602 . CT CTTGGTGAGTGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 70456120 . caga cAGAGaga 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 70469962 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 70475752 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 70491980 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 70501474 . g gCCCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 70507032 . G GTTTTGCCA 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=48 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 70517741 . CT CTCCATCTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 70522735 . T G 3.54 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,1,0;MQ=43;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,38:2:0:0/1:33 +chr11 70542127 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 70545410 . T TCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 70545765 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 70550978 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 70564792 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 70565145 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 70609134 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 70614539 . AA AAGCTCGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 70634907 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 70639898 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 70646735 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 70676197 . AA AACCTA 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 70707993 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 70711357 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 70716035 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 70730419 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 70731715 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 70733850 . T A 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 70736156 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 70743778 . CTTT CTTTTTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 70851720 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 70851821 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 70900409 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 70901703 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 70903926 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 70924486 . C A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 70976001 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 70977166 . CT CTAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 71018142 . C T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 71051272 . C T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 71053454 . ggctgag gg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 71079063 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 71086618 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 71125567 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 71126604 . gttctt g 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 71142614 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 71143356 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 71150217 . C T 11.1 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 +chr11 71152461 . A G 99 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=1,7,0,6;MQ=46;PV4=1,0.18,1.3e-05,0.4 PL:DP:SP:GT:GQ 130,0,213:14:0:0/1:99 +chr11 71154328 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 71154494 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 71158892 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 71169547 . G C 99 . DP=74;AF1=0.5;CI95=0.5,0.5;DP4=18,28,11,10;MQ=49;PV4=0.43,4.7e-17,7.9e-08,0.099 PL:DP:SP:GT:GQ 145,0,255:67:4:0/1:99 +chr11 71169648 . A G 66 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=4,16,2,4;MQ=49;PV4=0.6,0.0017,1.2e-10,1 PL:DP:SP:GT:GQ 96,0,255:26:2:0/1:99 +chr11 71169672 . C A 25 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=0,17,0,7;MQ=48;PV4=1,0.012,0.0085,1 PL:DP:SP:GT:GQ 55,0,206:24:0:0/1:58 +chr11 71183477 . C CTT 13.7 . INDEL;DP=20;AF1=0.5;CI95=0.5,0.5;DP4=6,1,2,0;MQ=50;PV4=1,0.22,1,0.015 PL:DP:SP:GT:GQ 51,0,222:9:0:0/1:54 +chr11 71185357 . G A 26 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=7,0,5,0;MQ=49;PV4=1,0.14,0.0033,1 PL:DP:SP:GT:GQ 56,0,112:12:0:0/1:59 +chr11 71185479 . T C 99 . DP=63;AF1=0.5;CI95=0.5,0.5;DP4=12,16,13,15;MQ=49;PV4=1,2.4e-27,0.042,1 PL:DP:SP:GT:GQ 170,0,255:56:0:0/1:99 +chr11 71207071 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 71221908 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 71252617 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 71292052 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 71333491 . gt gTCACt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 71370654 . G A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 71401505 . A C 3.54 . DP=18;AF1=0.4998;CI95=0.5,0.5;DP4=3,7,2,3;MQ=20;PV4=1,9.2e-06,1,1 PL:DP:SP:GT:GQ 31,0,74:15:0:0/1:34 +chr11 71418058 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 71418162 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 71471586 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 71478062 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 71511869 . C T 5.85 . DP=13;AF1=0.9998;CI95=0.5,1;DP4=0,1,0,2;MQ=38;PV4=1,0.028,1,1 PL:DP:SP:GT:GQ 34,2,0:3:0:1/1:37 +chr11 71513891 . G GCT 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=37;PV4=1,1,1,0.21 PL:DP:SP:GT:GQ 38,0,55:4:0:0/1:41 +chr11 71529217 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 71548645 . T C 9.31 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=32 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr11 71571671 . A ATGGTAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 71648996 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 71668231 . T G 8.65 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=47;PV4=1,1,1,0.25 PL:DP:SP:GT:GQ 38,0,37:6:0:0/1:37 +chr11 71668232 . T G 41 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=8,0,7,0;MQ=46;PV4=1,1,0.067,1 PL:DP:SP:GT:GQ 71,0,82:15:0:0/1:74 +chr11 71668240 . G C 3.01 . DP=23;AF1=0.4997;CI95=0.5,0.5;DP4=9,0,4,0;MQ=48;PV4=1,0.081,0.00099,1 PL:DP:SP:GT:GQ 30,0,164:13:0:0/1:33 +chr11 71668362 . CTT CT 40.4 . INDEL;DP=16;AF1=0.6671;CI95=0.5,1;DP4=0,1,0,5;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 77,0,3:6:0:0/1:5 +chr11 71686990 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 71707465 . T C 99 . DP=14;AF1=1;CI95=1,1;DP4=0,0,0,11;MQ=48 PL:DP:SP:GT:GQ 135,33,0:11:0:1/1:99 +chr11 71712175 . G A 30 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=47 PL:DP:SP:GT:GQ 62,9,0:3:0:1/1:63 +chr11 71715215 . C G 8.83 . DP=10;AF1=0.5263;CI95=0.5,1;DP4=1,0,0,2;MQ=47;PV4=0.33,1,0.29,1 PL:DP:SP:GT:GQ 38,0,10:3:0:0/1:13 +chr11 71715694 . T TCTC 3.25 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,3,1,0;MQ=50;PV4=0.25,1,1,1 PL:DP:SP:GT:GQ 38,0,103:4:0:0/1:41 +chr11 71727422 . A C 23 . DP=62;AF1=0.5004;CI95=0.5,0.5;DP4=1,1,1,4;MQ=50;PV4=1,0.08,0.29,1 PL:DP:SP:GT:GQ 53,0,28:7:0:0/1:31 +chr11 71728908 . AGTCAACG AG 99 . INDEL;DP=25;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,14;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 231,0,130:19:0:0/1:99 +chr11 71729077 . T C 4.13 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=1,1,1,0;MQ=48;PV4=1,0.15,0,1 PL:DP:SP:GT:GQ 32,0,88:3:0:0/1:35 +chr11 71740290 . A T 4.77 . DP=14;AF1=0.4999;CI95=0.5,0.5;DP4=4,1,1,2;MQ=50;PV4=0.46,0.2,0.042,1 PL:DP:SP:GT:GQ 33,0,92:8:3:0/1:36 +chr11 71740378 . AACA AACACA,AA 80.4 . INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=50 PL:DP:SP:GT:GQ 147,36,117,27,0,114:4:0:1/1:63 +chr11 71743992 . c cGATA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 71747015 . A G 6.2 . DP=19;AF1=0.4999;CI95=0.5,0.5;DP4=0,5,0,3;MQ=49;PV4=1,0.16,0.0045,1 PL:DP:SP:GT:GQ 35,0,101:8:0:0/1:38 +chr11 71759878 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 71815195 . T G 23 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=44 PL:DP:SP:GT:GQ 55,9,0:3:0:1/1:63 +chr11 71827469 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 71835747 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 71837388 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 71852448 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 71889154 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 71899547 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 71902878 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 71902882 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 71903054 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 71911810 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 71939048 . T A 12 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=48 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr11 71941212 . A G 29 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=2,11,0,10;MQ=50;PV4=0.49,1.8e-10,0.13,1 PL:DP:SP:GT:GQ 59,0,255:23:3:0/1:62 +chr11 71941381 . A G 70.5 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=45 PL:DP:SP:GT:GQ 103,12,0:4:0:1/1:72 +chr11 71944248 . C G 9.54 . DP=6;AF1=0.5025;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0,0,1 PL:DP:SP:GT:GQ 39,0,20:3:0:0/1:23 +chr11 71944253 . G T,C 6.02 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 48,18,35,12,0,35:3:0:1/1:49 +chr11 71946479 . C T 6.04 . DP=12;AF1=0.6242;CI95=0.5,1;DP4=0,1,0,2;MQ=47;PV4=1,1,0.41,0.4 PL:DP:SP:GT:GQ 34,0,4:3:0:0/1:6 +chr11 71947013 . GG GGTG 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 71968231 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 71977745 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 71992032 . C T 3.01 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=0,2,1,0;MQ=48;PV4=0.33,1,0,1 PL:DP:SP:GT:GQ 30,0,55:3:0:0/1:33 +chr11 72013862 . A T 3.08 . DP=2;AF1=0.516;CI95=0.5,0.5;DP4=1,0,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,12:2:0:0/1:15 +chr11 72024697 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 72028746 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 72029446 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 72045900 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 72056327 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 72064647 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 72074322 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 72077454 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 72087482 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 72089014 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 72114231 . G T 23 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,5;MQ=49;PV4=1,4.2e-06,0.013,1 PL:DP:SP:GT:GQ 53,0,131:9:0:0/1:56 +chr11 72137946 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 72157867 . TC TCCCCCTTATCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 72171275 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 72192811 . T C 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 72249186 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 72255325 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 72279699 . A T 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 72287273 . C T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 72288650 . TGGGGGG TGGGGG 53.5 . INDEL;DP=22;AF1=1;CI95=1,1;DP4=0,0,3,4;MQ=50 PL:DP:SP:GT:GQ 94,21,0:7:0:1/1:84 +chr11 72288664 . C T 99 . DP=17;AF1=1;CI95=0.5,1;DP4=0,1,0,13;MQ=47;PV4=1,1,0.2,1 PL:DP:SP:GT:GQ 133,18,0:14:0:1/1:90 +chr11 72288725 . C T 3.98 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 33,6,0:2:0:1/1:49 +chr11 72292353 . GA GAA 33.4 . INDEL;DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 73,9,0:3:0:1/1:63 +chr11 72292913 . G A 3.54 . DP=18;AF1=0.4998;CI95=0.5,0.5;DP4=4,4,3,0;MQ=48;PV4=0.24,0.12,0.009,0.44 PL:DP:SP:GT:GQ 31,0,190:11:6:0/1:34 +chr11 72293039 . G A 42.1 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=49 PL:DP:SP:GT:GQ 75,18,0:6:0:1/1:90 +chr11 72293602 . A G 99 . DP=49;AF1=1;CI95=1,1;DP4=0,1,7,27;MQ=44;PV4=1,1,0.008,1 PL:DP:SP:GT:GQ 255,88,0:35:0:1/1:99 +chr11 72295906 . A G 99 . DP=37;AF1=1;CI95=1,1;DP4=0,0,33,0;MQ=49 PL:DP:SP:GT:GQ 140,99,0:33:0:1/1:99 +chr11 72305801 . ctt c 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 72308093 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 72317758 . CC CCGGTCAACGC 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=47 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 72326210 . A G 99 . DP=18;AF1=1;CI95=1,1;DP4=0,1,0,15;MQ=43;PV4=1,1,0,1 PL:DP:SP:GT:GQ 212,25,0:16:0:1/1:99 +chr11 72329389 . CC CCAGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 72334944 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 72344996 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 72380043 . C T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 72391909 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 72399451 . A G 5.46 . DP=9;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,3,0;MQ=50;PV4=1,0.0013,0.14,1 PL:DP:SP:GT:GQ 34,0,132:7:0:0/1:37 +chr11 72404751 . A G 3.54 . DP=10;AF1=0.4998;CI95=0.5,0.5;DP4=4,0,1,1;MQ=49;PV4=0.33,0.25,0.015,0.28 PL:DP:SP:GT:GQ 31,0,94:6:0:0/1:34 +chr11 72405135 . ACACCACCACCACC ACACCACCACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 72405896 . G GCTATC 3.25 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,0.22 PL:DP:SP:GT:GQ 38,0,86:4:0:0/1:41 +chr11 72405935 . CTCA CTCAGTCA 5.08 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,66:3:0:0/1:44 +chr11 72405937 . CA CAGAA 5.08 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.15 PL:DP:SP:GT:GQ 41,0,60:3:0:0/1:44 +chr11 72405941 . T A 3.03 . DP=6;AF1=0.5037;CI95=0.5,0.5;DP4=1,0,2,0;MQ=50;PV4=1,0.089,0.33,0.26 PL:DP:SP:GT:GQ 30,0,18:3:0:0/1:21 +chr11 72410820 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 72412763 . T A 33 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=11,5,1,5;MQ=49;PV4=0.056,0.21,2.6e-07,1 PL:DP:SP:GT:GQ 63,0,233:22:13:0/1:66 +chr11 72420270 . a aGG 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 72420932 . C T 3.54 . DP=19;AF1=0.4998;CI95=0.5,0.5;DP4=6,6,6,0;MQ=50;PV4=0.054,9.5e-06,0.082,0.44 PL:DP:SP:GT:GQ 31,0,255:18:13:0/1:34 +chr11 72422969 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 72453531 . A AATCGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 72469499 . G T 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 72528035 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 72536272 . G A 18.8 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=46 PL:DP:SP:GT:GQ 50,6,0:2:0:1/1:49 +chr11 72561703 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 72578502 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 72606775 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 72630537 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 72635072 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 72662929 . ACT ACTTGAGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 72699268 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 72710905 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 72725169 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 72748071 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 72801871 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 72816757 . A AAG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 72841728 . T C 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 72887210 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 72896833 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 72916548 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 72916754 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 72945341 . C T 79.6 . DP=83;AF1=0.5939;CI95=0.5,1;DP4=1,1,3,8;MQ=48;PV4=1,0.27,0.24,1 PL:DP:SP:GT:GQ 109,0,5:13:0:0/1:7 +chr11 72948079 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 72977284 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 72978640 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 72986205 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 73000651 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 73022114 . G T 3.54 . DP=40;AF1=0.4998;CI95=0.5,0.5;DP4=12,7,0,7;MQ=50;PV4=0.0064,0.019,0.00035,1 PL:DP:SP:GT:GQ 31,0,255:26:22:0/1:34 +chr11 73023835 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 73038435 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 73047717 . T A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 73075518 . A C 4.13 . DP=15;AF1=0.4998;CI95=0.5,0.5;DP4=6,1,0,3;MQ=49;PV4=0.033,0.041,0.0033,1 PL:DP:SP:GT:GQ 32,0,175:10:15:0/1:35 +chr11 73101807 . G T 7.89 . DP=7;AF1=0.5128;CI95=0.5,0.5;DP4=0,1,3,0;MQ=47;PV4=0.25,1,0.13,1 PL:DP:SP:GT:GQ 37,0,13:4:0:0/1:16 +chr11 73106615 . T A 28 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=0,9,0,5;MQ=48;PV4=1,0.49,0.11,1 PL:DP:SP:GT:GQ 58,0,103:14:0:0/1:61 +chr11 73111397 . ca cATAa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 73113141 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 73117486 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 73122026 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 73195759 . a aCGT 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 73231490 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 73266150 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 73281696 . T A 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 73299247 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 73309565 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 73312759 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 73330338 . a aGTCAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 73360591 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 73374317 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 73420602 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 73427740 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 73448770 . t tCCAAAAA 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 73464466 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 73475371 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 73496863 . atcact at 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 73531730 . C G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 73531865 . CCCA CCCATGTCCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 73554784 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 73555852 . C CAGA 7.35 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 73566311 . C A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 73582892 . ACCTC A 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 73589787 . TGGGTAAG TGGGGTAAG 5.14 . INDEL;DP=24;AF1=0.5101;CI95=0.5,0.5;DP4=1,0,3,0;MQ=50;PV4=1,0.33,1,0.037 PL:DP:SP:GT:GQ 41,0,14:4:0:0/1:17 +chr11 73601107 . CA CAGCAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 73611349 . G C 46 . DP=72;AF1=0.5;CI95=0.5,0.5;DP4=21,29,5,11;MQ=49;PV4=0.56,3.7e-17,0.0033,0.098 PL:DP:SP:GT:GQ 76,0,255:66:3:0/1:79 +chr11 73633399 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 73662459 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 73669452 . C T 24 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,4,0,5;MQ=49;PV4=1,0.00012,0.0067,1 PL:DP:SP:GT:GQ 54,0,166:10:0:0/1:57 +chr11 73670645 . T C 99 . DP=48;AF1=0.5;CI95=0.5,0.5;DP4=12,9,13,11;MQ=49;PV4=1,5.3e-23,3.9e-14,1 PL:DP:SP:GT:GQ 185,0,255:45:0:0/1:99 +chr11 73674439 . AA AATGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 73676058 . A G 4.13 . DP=19;AF1=0.4998;CI95=0.5,0.5;DP4=1,2,0,2;MQ=48;PV4=1,0.37,0,1 PL:DP:SP:GT:GQ 32,0,65:5:0:0/1:35 +chr11 73681135 . G A 99 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=2,12,4,10;MQ=47;PV4=0.65,0.001,6.1e-11,1 PL:DP:SP:GT:GQ 215,0,255:28:2:0/1:99 +chr11 73684413 . C G 4.77 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,35:2:0:0/1:34 +chr11 73686050 . G T 25 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,1,4,0;MQ=48;PV4=0.33,0.037,0.0022,1 PL:DP:SP:GT:GQ 55,0,63:6:0:0/1:57 +chr11 73689104 . G A 26 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=1,3,4,1;MQ=50;PV4=0.21,0.028,0.051,1 PL:DP:SP:GT:GQ 56,0,107:9:7:0/1:59 +chr11 73692388 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 73702235 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 73712460 . A C 38 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=6,3,7,1;MQ=49;PV4=0.58,0.034,0.00017,1 PL:DP:SP:GT:GQ 68,0,192:17:2:0/1:71 +chr11 73715542 . G A 4.13 . DP=41;AF1=0.4998;CI95=0.5,0.5;DP4=12,1,6,0;MQ=50;PV4=1,6.6e-08,0.014,0.24 PL:DP:SP:GT:GQ 32,0,255:19:0:0/1:35 +chr11 73715723 . GCCCC GCC 5.8 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 73747052 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 73768621 . T G 34 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=3,9,0,7;MQ=49;PV4=0.26,0.059,0.00053,0.12 PL:DP:SP:GT:GQ 64,0,196:19:6:0/1:67 +chr11 73796608 . T C 30 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=48 PL:DP:SP:GT:GQ 62,9,0:3:0:1/1:63 +chr11 73816671 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 73820295 . T A 31 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,5;MQ=48;PV4=1,0.43,0.0069,0.2 PL:DP:SP:GT:GQ 61,0,70:10:0:0/1:63 +chr11 73889895 . T A 8.65 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 73908989 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 73930544 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 73933033 . A ACGGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 73979557 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 73990365 . A T 9.52 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=4,0,3,0;MQ=46;PV4=1,0.081,0.17,1 PL:DP:SP:GT:GQ 39,0,105:7:0:0/1:42 +chr11 73990370 . C T 6.98 . DP=13;AF1=0.4999;CI95=0.5,0.5;DP4=7,0,2,0;MQ=48;PV4=1,0.012,0.00028,1 PL:DP:SP:GT:GQ 36,0,186:9:0:0/1:39 +chr11 73998300 . T A 3.54 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,1,0;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,44:2:0:0/1:34 +chr11 74047683 . A G 91 . DP=32;AF1=1;CI95=1,1;DP4=1,0,26,0;MQ=48;PV4=1,0.12,0.25,1 PL:DP:SP:GT:GQ 124,52,0:27:0:1/1:99 +chr11 74049569 . A G 99 . DP=50;AF1=1;CI95=1,1;DP4=1,1,19,19;MQ=48;PV4=1,1,0.15,1 PL:DP:SP:GT:GQ 255,87,0:40:0:1/1:99 +chr11 74050838 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 74053547 . C T 99 . DP=22;AF1=1;CI95=1,1;DP4=1,0,9,9;MQ=46;PV4=1,0.46,0.012,1 PL:DP:SP:GT:GQ 242,29,0:19:0:1/1:99 +chr11 74057931 . C T 75.1 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=47 PL:DP:SP:GT:GQ 108,18,0:6:0:1/1:90 +chr11 74080557 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 74167715 . ctc cTCTtc 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 74168468 . C T 13.2 . DP=53;AF1=0.5;CI95=0.5,0.5;DP4=7,13,0,9;MQ=49;PV4=0.066,0.034,1,1 PL:DP:SP:GT:GQ 43,0,231:29:12:0/1:46 +chr11 74180831 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 74183285 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 74185646 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 74187696 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 74188263 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 74212034 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 74266591 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 74279656 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 74308464 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 74322439 . GT GTCTT 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 74329615 . T C 42.3 . DP=46;AF1=1;CI95=0.5,1;DP4=0,0,3,2;MQ=50 PL:DP:SP:GT:GQ 75,15,0:5:0:1/1:75 +chr11 74329861 . T C 4.77 . DP=21;AF1=0.4999;CI95=0.5,0.5;DP4=2,5,0,4;MQ=49;PV4=0.49,0.15,0.2,1 PL:DP:SP:GT:GQ 33,0,151:11:3:0/1:36 +chr11 74330980 . A G 68 . DP=13;AF1=1;CI95=1,1;DP4=0,0,10,0;MQ=49 PL:DP:SP:GT:GQ 101,30,0:10:0:1/1:99 +chr11 74351083 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 74380117 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 74387285 . caaat c 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 74395258 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 74403340 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 74404021 . C G 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 74407676 . C T 56 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,6;MQ=47;PV4=1,0.2,0.05,0.47 PL:DP:SP:GT:GQ 86,0,88:10:0:0/1:87 +chr11 74408511 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 74410807 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 74413885 . G T 4.13 . DP=48;AF1=0.4998;CI95=0.5,0.5;DP4=16,7,0,6;MQ=49;PV4=0.0036,0.07,2.6e-05,1 PL:DP:SP:GT:GQ 32,0,255:29:24:0/1:35 +chr11 74425964 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 74437590 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 74441796 . T G 24 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 56,9,0:3:0:1/1:63 +chr11 74447638 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 74457056 . A G 3.64 . DP=21;AF1=0.5205;CI95=0.5,0.5;DP4=1,0,1,2;MQ=32;PV4=1,0.49,0.058,0.0081 PL:DP:SP:GT:GQ 31,0,11:4:0:0/1:14 +chr11 74458066 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 74475525 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 74507833 . C A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 74511246 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 74514955 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 74522153 . G C 12.3 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 74560548 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 74619577 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 74627176 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 74637559 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 74668790 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 74706065 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 74734875 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 74782297 . C T 6.98 . DP=7;AF1=0.4999;CI95=0.5,0.5;DP4=1,2,2,0;MQ=48;PV4=0.4,0.21,0.012,0.3 PL:DP:SP:GT:GQ 36,0,90:5:4:0/1:39 +chr11 74789479 . C CGACTATCGACA 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 74790272 . A C 16.1 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=20 PL:DP:SP:GT:GQ 48,9,0:3:0:1/1:63 +chr11 74800397 . ACC AAGCATTCGCTTCC 7.62 . INDEL;DP=12;AF1=0.543;CI95=0.5,1;DP4=1,0,0,1;MQ=37;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,8:2:0:0/1:11 +chr11 74800829 . A G 99 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=0,13,0,20;MQ=47;PV4=1,6.4e-10,7.1e-07,1 PL:DP:SP:GT:GQ 133,0,211:33:0:0/1:99 +chr11 74821941 . tc tCGc 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 74849388 . gtgtc gTGTCAtgtc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 74862376 . CCA CCACA 5.08 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.089 PL:DP:SP:GT:GQ 41,0,38:3:0:0/1:39 +chr11 74862624 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 74864636 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 74867441 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 74880737 . G T 50 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=5,3,10,0;MQ=48;PV4=0.069,0.012,0.092,0.084 PL:DP:SP:GT:GQ 80,0,171:18:12:0/1:83 +chr11 74889561 . ac aCCCCGTACGACc 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 74893337 . g gTGGTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 74904362 . T C 91.2 . DP=40;AF1=0.7303;CI95=0.5,1;DP4=1,1,5,5;MQ=49;PV4=1,1,0.17,1 PL:DP:SP:GT:GQ 120,0,2:12:0:0/1:3 +chr11 74907582 . C T 33 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=47 PL:DP:SP:GT:GQ 65,9,0:3:0:1/1:63 +chr11 74909357 . t tGCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 74924818 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 74929263 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 74937810 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 74947131 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 74949986 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 74976632 . C CTCATCCATG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 74977185 . C T 5.58 . DP=5;AF1=0.5206;CI95=0.5,1;DP4=1,0,2,0;MQ=45;PV4=1,1,0.077,0.31 PL:DP:SP:GT:GQ 34,0,11:3:0:0/1:14 +chr11 74985005 . G A 5.46 . DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=47;PV4=1,0.15,0.061,1 PL:DP:SP:GT:GQ 34,0,63:4:0:0/1:37 +chr11 75029167 . cg cGAg 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 75041728 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 75071521 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 75082763 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 75098555 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 75103485 . t tAGATATC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 75112797 . G T 11.3 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,4;MQ=49;PV4=0.43,0.2,1,1 PL:DP:SP:GT:GQ 41,0,55:7:0:0/1:44 +chr11 75113329 . CCA CCACA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 75152243 . C T 70.1 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,5,1;MQ=48 PL:DP:SP:GT:GQ 103,18,0:6:0:1/1:90 +chr11 75155514 . G T 6.98 . DP=14;AF1=0.4999;CI95=0.5,0.5;DP4=1,2,0,3;MQ=49;PV4=1,0.093,0.34,1 PL:DP:SP:GT:GQ 36,0,91:6:0:0/1:39 +chr11 75160575 . G A 19 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 51,9,0:3:0:1/1:63 +chr11 75160588 . C A 5.46 . DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=3,1,0,2;MQ=47;PV4=0.4,0.11,0.23,0.19 PL:DP:SP:GT:GQ 34,0,130:6:4:0/1:37 +chr11 75160636 . T A 23 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,4;MQ=49;PV4=0.43,0.065,0.11,1 PL:DP:SP:GT:GQ 53,0,93:7:0:0/1:56 +chr11 75160898 . TGTGAG TG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 75166510 . T C 3.54 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,1,1;MQ=47;PV4=1,0.026,0.3,1 PL:DP:SP:GT:GQ 31,0,41:3:0:0/1:34 +chr11 75232324 . ACC ACCCCTTTTCTCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 75233397 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 75235827 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 75235871 . C CAG 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 75236817 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 75266841 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 75272346 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 75277842 . A T 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 75277871 . C G 5.46 . DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=2,1,0,2;MQ=48;PV4=0.4,0.11,0.00034,1 PL:DP:SP:GT:GQ 34,0,104:5:4:0/1:37 +chr11 75289141 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 75311090 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 75330197 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 75339110 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 75352600 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 75378389 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 75401405 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 75415238 . T A 5.48 . DP=2;AF1=0.5039;CI95=0.5,0.5;DP4=1,0,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,18:2:0:0/1:21 +chr11 75416788 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 75438711 . C A 8.64 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,3;MQ=48;PV4=1,0.077,0.059,1 PL:DP:SP:GT:GQ 38,0,121:8:0:0/1:41 +chr11 75439759 . AG AGAGG 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 75455278 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 75490814 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 75497223 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 75501207 . C G 22 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=48;PV4=1,0.15,0.045,1 PL:DP:SP:GT:GQ 52,0,76:6:0:0/1:55 +chr11 75501337 . A T 18.1 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=1,3,0,4;MQ=47;PV4=1,0.11,0.1,1 PL:DP:SP:GT:GQ 48,0,104:8:0:0/1:51 +chr11 75510007 . AA AATGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 75511604 . T G 4.13 . DP=10;AF1=0.4998;CI95=0.5,0.5;DP4=0,2,0,3;MQ=48;PV4=1,0.037,0.039,0.005 PL:DP:SP:GT:GQ 32,0,59:5:0:0/1:35 +chr11 75528243 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 75532184 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 75585108 . AGT AGTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 75610386 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 75610394 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 75622634 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 75634706 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 75640093 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 75651075 . AAAT A 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 75704388 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 75704616 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 75740414 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 75770898 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 75788257 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 75791909 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 75799147 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 75840822 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 75851857 . C G 8.64 . DP=40;AF1=0.5;CI95=0.5,0.5;DP4=20,9,0,7;MQ=49;PV4=0.0014,0.00049,2.1e-07,0.31 PL:DP:SP:GT:GQ 38,0,255:36:29:0/1:41 +chr11 75868464 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 75868467 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 75873964 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 75874815 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 75879772 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 75894204 . AG AGAAGCGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 75895536 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 75916895 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 75921788 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 75922459 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 75928422 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 75930426 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 75935525 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 75955307 . AT ATGCCAGGGT 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,43:2:0:0/1:43 +chr11 75974502 . A C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 76009463 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 76013880 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 76039258 . C A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 76042981 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 76063276 . C CTCTGG 7.35 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 76088315 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 76110913 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 76134699 . G GATGTACATT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 76136547 . A T 4.77 . DP=3;AF1=0.4999;CI95=0.5,0.5;DP4=1,1,0,1;MQ=47;PV4=1,0.45,0,1 PL:DP:SP:GT:GQ 33,0,74:3:0:0/1:36 +chr11 76145881 . C A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 76175313 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 76183924 . A G 29 . DP=32;AF1=1;CI95=1,1;DP4=0,1,0,25;MQ=50;PV4=1,5.8e-10,0.42,1 PL:DP:SP:GT:GQ 62,55,0:26:0:1/1:99 +chr11 76227182 . G A 74 . DP=35;AF1=1;CI95=1,1;DP4=1,0,27,2;MQ=50;PV4=1,0.042,0.42,1 PL:DP:SP:GT:GQ 107,66,0:30:0:1/1:99 +chr11 76300466 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 76304837 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 76307941 . C A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 76341796 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 76347096 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 76370517 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 76370792 . A G 7.5 . DP=22;AF1=0.5939;CI95=0.5,1;DP4=1,0,0,3;MQ=49;PV4=0.25,1,1,1 PL:DP:SP:GT:GQ 36,0,5:4:0:0/1:7 +chr11 76371032 . AGCC A 3.25 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=3,0,0,1;MQ=50;PV4=0.25,1,1,0.2 PL:DP:SP:GT:GQ 38,0,82:4:0:0/1:41 +chr11 76372052 . A G 24.5 . DP=14;AF1=0.5718;CI95=0.5,1;DP4=1,0,2,2;MQ=50;PV4=1,0.26,0.34,1 PL:DP:SP:GT:GQ 54,0,6:5:0:0/1:8 +chr11 76372564 . T C 99 . DP=9;AF1=0.5939;CI95=0.5,1;DP4=0,1,0,5;MQ=44;PV4=1,1,0,1 PL:DP:SP:GT:GQ 131,0,5:6:0:0/1:7 +chr11 76391315 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 76392921 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 76404382 . AAAG A 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 76405965 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 76419073 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 76470819 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 76474264 . t tCTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 76491933 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 76506572 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 76521357 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 76544173 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 76584598 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 76594009 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 76637730 . C G 51 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=0,12,0,7;MQ=48;PV4=1,0.021,0.046,1 PL:DP:SP:GT:GQ 81,0,194:19:0:0/1:84 +chr11 76671808 . GCA G 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 76681582 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 76696092 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 76705094 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 76709795 . G A 94 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=9,0,6,0;MQ=47;PV4=1,0.075,0.00013,0.49 PL:DP:SP:GT:GQ 124,0,208:15:0:0/1:99 +chr11 76731050 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 76750186 . C CT 3.25 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 76773713 . gaga gAGAGATaga 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 76780203 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 76783985 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 76785769 . G GTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 76793044 . ACAT A 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 76796362 . agt aGTgt 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 76824636 . ca cAGTGACTTa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 76827360 . A G 44 . DP=11;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=49 PL:DP:SP:GT:GQ 77,27,0:9:0:1/1:99 +chr11 76834712 . A G 65 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=7,0,8,0;MQ=48;PV4=1,4.4e-06,4.1e-05,0.39 PL:DP:SP:GT:GQ 95,0,175:15:0:0/1:98 +chr11 76860336 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 76877889 . T TTCGTCC 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 76884730 . G GGTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 76893081 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 76944049 . C T 37 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=12,3,11,0;MQ=49;PV4=0.24,3.7e-12,1.2e-06,1 PL:DP:SP:GT:GQ 67,0,255:26:6:0/1:70 +chr11 76951736 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 76979900 . C G 65.1 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=47 PL:DP:SP:GT:GQ 98,18,0:6:0:1/1:90 +chr11 76980179 . C A 4.13 . DP=17;AF1=0.4998;CI95=0.5,0.5;DP4=0,5,0,3;MQ=49;PV4=1,0.023,0.037,1 PL:DP:SP:GT:GQ 32,0,80:8:0:0/1:35 +chr11 77061551 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 77092253 . T A 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 77150166 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 77154333 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 77204703 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 77218259 . C T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 77228851 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 77241688 . cat cATTat 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 77250610 . g gTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 77254896 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 77284042 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 77298011 . t tCGCAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 77301341 . G A 40 . DP=46;AF1=0.5;CI95=0.5,0.5;DP4=7,14,3,6;MQ=49;PV4=1,1.7e-06,0.0068,0.32 PL:DP:SP:GT:GQ 70,0,255:30:0:0/1:73 +chr11 77301689 . C T 3.01 . DP=38;AF1=0.4997;CI95=0.5,0.5;DP4=2,18,1,5;MQ=50;PV4=1,0.0007,0.00027,0.067 PL:DP:SP:GT:GQ 30,0,255:26:0:0/1:33 +chr11 77301883 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 77316882 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 77317755 . t tTA 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 77333742 . G T 4.13 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=2,0,0,2;MQ=47;PV4=0.33,0.46,0.013,1 PL:DP:SP:GT:GQ 32,0,33:4:5:0/1:32 +chr11 77335982 . C A 37.1 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=49 PL:DP:SP:GT:GQ 70,18,0:6:0:1/1:90 +chr11 77340816 . T G 3.01 . DP=15;AF1=0.4997;CI95=0.5,0.5;DP4=10,0,0,3;MQ=49;PV4=0.0035,0.016,6.9e-05,0.15 PL:DP:SP:GT:GQ 30,0,184:13:25:0/1:33 +chr11 77345384 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 77359133 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 77378388 . T C 99 . DP=40;AF1=0.5;CI95=0.5,0.5;DP4=9,13,8,7;MQ=49;PV4=0.52,1.7e-15,4e-06,1 PL:DP:SP:GT:GQ 143,0,255:37:3:0/1:99 +chr11 77378505 . A G 99 . DP=46;AF1=0.5;CI95=0.5,0.5;DP4=6,16,4,13;MQ=47;PV4=1,0.46,7.8e-18,1 PL:DP:SP:GT:GQ 255,0,255:39:0:0/1:99 +chr11 77379507 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 77389063 . CTAATT CT 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,0.47,1,1 PL:DP:SP:GT:GQ 38,0,96:4:0:0/1:41 +chr11 77402323 . T G 6.02 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr11 77408459 . AG AGCCCCCCTCAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 77409568 . T C 99 . DP=70;AF1=0.5;CI95=0.5,0.5;DP4=17,25,15,7;MQ=49;PV4=0.064,1.9e-20,6.8e-18,1 PL:DP:SP:GT:GQ 156,0,255:64:12:0/1:99 +chr11 77409643 . TT TTGTCTTGTGAACCGT 99 . INDEL;DP=35;AF1=1;CI95=1,1;DP4=0,0,13,14;MQ=50 PL:DP:SP:GT:GQ 245,81,0:27:0:1/1:99 +chr11 77420187 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 77428212 . c cCAGGTGTGTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 77432034 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 77440727 . T G 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 77446051 . T C 17.1 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,7;MQ=24;PV4=1,9e-07,0.35,1 PL:DP:SP:GT:GQ 47,0,81:14:0:0/1:50 +chr11 77447192 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 77463350 . T G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 77475707 . A T 4.13 . DP=20;AF1=0.4998;CI95=0.5,0.5;DP4=0,12,4,0;MQ=49;PV4=0.00055,0.00037,0.056,0.44 PL:DP:SP:GT:GQ 32,0,209:16:33:0/1:35 +chr11 77485859 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 77544558 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 77553638 . T C 99 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=13,5,11,0;MQ=48;PV4=0.13,3.2e-06,2e-17,0.5 PL:DP:SP:GT:GQ 163,0,255:29:9:0/1:99 +chr11 77571646 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 77583266 . G A 66 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=6,2,6,2;MQ=49;PV4=1,1.6e-06,0.036,0.34 PL:DP:SP:GT:GQ 96,0,242:16:0:0/1:99 +chr11 77597132 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 77600716 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 77613688 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 77614691 . C T 4.77 . DP=4;AF1=0.5001;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,30:2:0:0/1:31 +chr11 77627321 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 77632462 . G A 4.77 . DP=18;AF1=0.4999;CI95=0.5,0.5;DP4=2,3,0,3;MQ=49;PV4=0.46,0.0013,1,1 PL:DP:SP:GT:GQ 33,0,174:8:3:0/1:36 +chr11 77654360 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 77669940 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 77705182 . C CCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 77705510 . G T,C 16.9 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=46 PL:DP:SP:GT:GQ 62,20,47,14,0,47:3:0:1/1:49 +chr11 77705733 . GC GCC 63.5 . INDEL;DP=31;AF1=0.5;CI95=0.5,0.5;DP4=0,14,0,8;MQ=50;PV4=1,1,1,0.02 PL:DP:SP:GT:GQ 101,0,115:22:0:0/1:99 +chr11 77705734 . CGGGGG CGGGGGG 7.35 . INDEL;DP=29;AF1=0.5;CI95=0.5,0.5;DP4=0,14,0,8;MQ=50;PV4=1,1,1,0.024 PL:DP:SP:GT:GQ 44,0,65:22:0:0/1:47 +chr11 77736065 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 77767426 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 77768630 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 77775466 . C G 23 . DP=5;AF1=0.5001;CI95=0.5,0.5;DP4=0,1,0,4;MQ=49;PV4=1,0,0,1 PL:DP:SP:GT:GQ 53,0,35:5:0:0/1:38 +chr11 77783747 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 77811990 . T C 82 . DP=11;AF1=1;CI95=1,1;DP4=0,0,9,0;MQ=48 PL:DP:SP:GT:GQ 115,27,0:9:0:1/1:99 +chr11 77820670 . T C 11.3 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=49;PV4=1,0.039,0.079,0.42 PL:DP:SP:GT:GQ 41,0,78:6:0:0/1:44 +chr11 77823862 . T C 3.64 . DP=7;AF1=0.5205;CI95=0.5,0.5;DP4=0,1,0,3;MQ=46;PV4=1,1,0.26,0.093 PL:DP:SP:GT:GQ 31,0,11:4:0:0/1:14 +chr11 77823869 . TC TCCCAC 3.25 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,80:4:0:0/1:41 +chr11 77836103 . g gCCACCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 77851131 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 77866071 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 77883882 . act aCTct 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr11 77909980 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 77915923 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 77920674 . G A 4.13 . DP=26;AF1=0.4998;CI95=0.5,0.5;DP4=3,7,0,5;MQ=49;PV4=0.51,0.15,0.007,0.44 PL:DP:SP:GT:GQ 32,0,170:15:3:0/1:35 +chr11 77920999 . A G 3.02 . DP=2;AF1=0.501;CI95=0.5,0.5;DP4=1,0,0,1;MQ=43;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,23:2:0:0/1:25 +chr11 77925380 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 77936025 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 77936113 . AC ACAGTC 7.38 . INDEL;DP=10;AF1=0.504;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,18:2:0:0/1:21 +chr11 77938049 . A T 56 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=5,1,0,6;MQ=46;PV4=0.015,0.21,0.072,0.39 PL:DP:SP:GT:GQ 86,0,119:12:18:0/1:89 +chr11 77951394 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 77973694 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 77974741 . A ACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 78053544 . T A 8.65 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 78068357 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 78081491 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 78096812 . T TGGAGC 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,103:4:0:0/1:41 +chr11 78098020 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 78106963 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 78126566 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 78128099 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 78138204 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 78150901 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 78169373 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 78186527 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 78204073 . CACAGATAC CAC 99 . INDEL;DP=9;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=50 PL:DP:SP:GT:GQ 195,18,0:6:0:1/1:90 +chr11 78204406 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 78216272 . C T 3.8 . DP=3;AF1=0.8276;CI95=0.5,1;DP4=1,0,0,2;MQ=39;PV4=0.33,0.084,1,0.33 PL:DP:SP:GT:GQ 30,0,1:3:0:1/1:5 +chr11 78223089 . AAAGAA AAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 78277122 . T C 12 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=46 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr11 78277277 . A G 99 . DP=38;AF1=1;CI95=1,1;DP4=0,0,3,11;MQ=48 PL:DP:SP:GT:GQ 173,42,0:14:0:1/1:99 +chr11 78279790 . T G 6.23 . DP=7;AF1=0.505;CI95=0.5,0.5;DP4=0,1,0,2;MQ=49;PV4=1,0,0,1 PL:DP:SP:GT:GQ 35,0,17:3:0:0/1:20 +chr11 78283442 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 78294425 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 78342357 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 78358037 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 78367706 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 78369897 . A ACGTCG 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 78372279 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 78381687 . T TCTTTATGTGAC 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 78394910 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 78395542 . ATC ATCCCTC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 78398161 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 78407693 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 78407705 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 78410540 . tcag t 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 78419770 . CT CTGAAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 78424168 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 78437333 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 78437432 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 78453708 . T TGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 78463126 . C CGAA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 78470980 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 78474573 . A ACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 78554359 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 78576068 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 78583668 . G GGAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 78603447 . G GTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 78603924 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 78610830 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 78620863 . G GGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 78632599 . GAC G 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 78636164 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 78637244 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 78676788 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 78724266 . AC ACTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 78738155 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 78751248 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 78775981 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 78803149 . agcc aGCCgcc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 78813849 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 78839557 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 78887943 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 78904933 . C CGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 78975835 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 79013831 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 79024110 . A AGC 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 79046486 . TAAA T 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 79059790 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 79070685 . T TCTAATC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 79088464 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 79125744 . A ACG 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 79152027 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 79164203 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 79170137 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 79175951 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 79241644 . cc cCGCGTTc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 79326770 . a aGAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 79329433 . T G 5.46 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,44:2:0:0/1:37 +chr11 79336965 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 79351503 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 79369879 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 79385202 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 79426232 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 79444798 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 79448390 . C T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 79492521 . A AGTCGGGTAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 79513789 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 79536416 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 79541397 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 79552592 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 79556187 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 79616905 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 79648899 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 79687920 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 79698795 . T C 4.19 . DP=4;AF1=0.5127;CI95=0.5,0.5;DP4=1,0,2,0;MQ=49;PV4=1,1,0.17,1 PL:DP:SP:GT:GQ 32,0,13:3:0:0/1:16 +chr11 79720155 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 79731733 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 79752425 . G GAAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 79779040 . C CTAAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 79781037 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 79801866 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 79853354 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 79869696 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 79870486 . A ACG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 79894890 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 79937596 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 79970664 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 79976489 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 80005528 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 80007172 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 80011863 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 80023222 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 80066006 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 80105017 . GGA GGATGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 80134455 . TACAGA T 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 80141934 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 80152786 . T TTC 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 80163291 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 80192427 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 80197664 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 80221540 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 80223610 . ATA ATAGTA 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 80237880 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 80275498 . at aTAGTt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 80296721 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 80298701 . C G 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 80322351 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 80328298 . c cAGTAGTGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 80366038 . C CCGACG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 80383847 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 80385135 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 80398762 . C T,G 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,2;MQ=44 PL:DP:SP:GT:GQ 48,21,30,18,0,30:2:0:1/1:41 +chr11 80399104 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 80439283 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 80450565 . T A 12.3 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 80456681 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 80470140 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 80494084 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 80526977 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 80565294 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 80602228 . CT CTCCTGGTAAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 80603045 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 80641044 . ac aCATc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 80647925 . C A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 80665612 . A AGTGTG 5.8 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 80684304 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 80752669 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 80764816 . A ATCGGACCCGTC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 80780206 . t tCTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 80811442 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 80818347 . A ACGGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 80843059 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 80851262 . G GCCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 80942366 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 81003491 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 81042689 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 81078869 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 81080512 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 81131742 . G GAATT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 81165129 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 81180580 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 81204652 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 81214791 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 81235566 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 81260434 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 81366269 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 81366352 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 81368229 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 81380584 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 81415701 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 81446057 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 81451366 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 81534008 . ta tATCCCTCCGa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 81542699 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 81583722 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 81616727 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 81638749 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 81640048 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 81670392 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 81681159 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 81703992 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 81723736 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 81724348 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 81732089 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 81807317 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 81816256 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 81818493 . A C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 81837412 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 81890264 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 81895417 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 81898250 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 81944728 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 81949290 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 81957167 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 81964149 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 81985753 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 82051191 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 82058582 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 82067581 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 82074085 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 82090087 . tggccacc t 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 82090428 . t tGACAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 82126336 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 82141893 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 82146934 . T TCCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 82149693 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 82171518 . ct cTAAGGGt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 82196454 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 82221799 . G GTA 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 82224418 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 82235946 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 82239110 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 82253459 . C CGCTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 82303930 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 82321953 . CC CCAGATGAAGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 82331088 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 82339838 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 82394736 . A G 4.77 . DP=2;AF1=0.5007;CI95=0.5,0.5;DP4=1,0,1,0;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,25:2:0:0/1:27 +chr11 82399806 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 82420083 . C G 4.77 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,44:2:0:0/1:36 +chr11 82424839 . A ATG 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 82433112 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 82444556 . C T 4.77 . DP=7;AF1=0.4999;CI95=0.5,0.5;DP4=2,1,0,3;MQ=50;PV4=0.4,0.099,0.19,0.22 PL:DP:SP:GT:GQ 33,0,60:6:4:0/1:36 +chr11 82464407 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 82484587 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 82488744 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 82511662 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 82546915 . G C,T 13.6 . DP=9;AF1=0.5554;CI95=0.5,1;DP4=0,1,0,4;MQ=46;PV4=1,1,0.18,1 PL:DP:SP:GT:GQ 65,22,36,29,0,48:5:0:0/1:10 +chr11 82570064 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 82583661 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 82583668 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 82641157 . A G 7.8 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=3,0,2,0;MQ=48;PV4=1,0.00084,0,0.061 PL:DP:SP:GT:GQ 37,0,108:5:0:0/1:40 +chr11 82644904 . G A 99 . DP=38;AF1=0.5;CI95=0.5,0.5;DP4=18,2,10,7;MQ=49;PV4=0.052,3.3e-07,0.00025,1 PL:DP:SP:GT:GQ 189,0,255:37:13:0/1:99 +chr11 82648906 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 82663618 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 82704197 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 82729584 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 82730583 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 82736935 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 82744056 . G GAACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 82774125 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 82799473 . AAT AATGGAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 82808324 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 82843553 . C A 3.54 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,44:2:0:0/1:34 +chr11 82863829 . a aGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 82868349 . T A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 82878833 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 82905670 . G T 4.13 . DP=13;AF1=0.4999;CI95=0.5,0.5;DP4=3,0,3,0;MQ=46;PV4=1,1,0.065,1 PL:DP:SP:GT:GQ 32,0,42:6:0:0/1:35 +chr11 82917222 . T G 6.2 . DP=15;AF1=0.4999;CI95=0.5,0.5;DP4=0,3,0,4;MQ=48;PV4=1,0.17,0.037,1 PL:DP:SP:GT:GQ 35,0,51:7:0:0/1:38 +chr11 82921538 . C T 14.7 . DP=24;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=50 PL:DP:SP:GT:GQ 47,12,0:4:0:1/1:72 +chr11 82924221 . G T 5.46 . DP=10;AF1=0.4999;CI95=0.5,0.5;DP4=6,0,1,2;MQ=49;PV4=0.083,0.0048,0.0046,1 PL:DP:SP:GT:GQ 34,0,156:9:11:0/1:37 +chr11 82924358 . T C 18.8 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=39 PL:DP:SP:GT:GQ 50,6,0:2:0:1/1:49 +chr11 82928487 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 82932598 . ttgt tTGtgt 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 82947606 . A G 6.2 . DP=3;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 35,0,43:2:0:0/1:37 +chr11 82955266 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 82976874 . G C 16.1 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=8,0,5,0;MQ=50;PV4=1,1.4e-05,0,0.4 PL:DP:SP:GT:GQ 46,0,181:13:0:0/1:49 +chr11 82987021 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 83025757 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 83030582 . G T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 83032086 . a aTGTCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 83044310 . t tAC 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 83046302 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 83074939 . T C 4.61 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=46 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 83098407 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 83136810 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 83180522 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 83184822 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 83200228 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 83208724 . T A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 83213713 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 83213723 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 83214648 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 83242456 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 83244173 . T G 18.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=38 PL:DP:SP:GT:GQ 50,6,0:2:0:1/1:49 +chr11 83261455 . T A 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 83287491 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 83308529 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 83315469 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 83373230 . AAT AATCAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 83389906 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 83392064 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 83421576 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 83427322 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 83434414 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 83479583 . TTA TTATA 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 83479956 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 83489379 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 83501343 . A G 5.46 . DP=3;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,1;MQ=48;PV4=1,0.029,0,1 PL:DP:SP:GT:GQ 34,0,83:3:0:0/1:37 +chr11 83560788 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 83608248 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 83624115 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 83625304 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 83630067 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 83633784 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 83649818 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 83656452 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 83671895 . T TTAAGGG 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 83673805 . A C 6.02 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr11 83681015 . TA TAAGGCCCCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 83691458 . G C 80.3 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=45 PL:DP:SP:GT:GQ 113,15,0:5:0:1/1:75 +chr11 83703453 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 83704681 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 83737295 . A T 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 83747797 . AATAG A 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 83766558 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 83773693 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 83791775 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 83826550 . AG AGGTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 83840805 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 83855082 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 83858782 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 83901506 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 83916889 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 83929901 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 83938587 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 83953410 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 83985247 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 83992996 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 83996593 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 84023537 . a aCTTTAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 84025845 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 84082341 . A C 3.07 . DP=2;AF1=0.5126;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,13:2:0:0/1:16 +chr11 84124725 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 84173002 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 84194970 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 84231798 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 84239109 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 84257129 . G A 17.1 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,3;MQ=49;PV4=1,0.22,0.1,0.29 PL:DP:SP:GT:GQ 47,0,83:6:0:0/1:50 +chr11 84274234 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 84294935 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 84309057 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 84430224 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 84448528 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 84471638 . CACT C 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 84506485 . c cTTTA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 84523838 . GA GAGGTCTCTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 84543628 . C CAGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 84576320 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 84577448 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 84589412 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 84612394 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 84637918 . t tAACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 84645520 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 84646337 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 84656005 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 84743230 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 84769892 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 84783740 . a aGATGATTTCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 84784329 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 84801032 . A AGACACAAGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 84815069 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 84830248 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 84845037 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 84857320 . g gCCTCT 7.62 . INDEL;DP=3;AF1=0.543;CI95=0.5,1;DP4=0,1,0,1;MQ=37;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,8:2:0:0/1:11 +chr11 84872358 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 84875918 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 84885329 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 84923376 . T A 11.3 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 84977885 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 84979190 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 84980646 . tgtaag tg 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 85131396 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 85170983 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 85235149 . g gTGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 85241119 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 85251696 . t tGCATGC 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 85294772 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 85313453 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 85347228 . T C 8.64 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=4,1,0,4;MQ=46;PV4=0.048,0.043,0.0085,0.41 PL:DP:SP:GT:GQ 38,0,140:9:13:0/1:41 +chr11 85347306 . A G 12.3 . DP=6;AF1=0.5001;CI95=0.5,0.5;DP4=0,3,0,3;MQ=49;PV4=1,1,0.079,1 PL:DP:SP:GT:GQ 42,0,34:6:0:0/1:36 +chr11 85360000 . a aTT 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 85367289 . C T 56 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=3,0,5,0;MQ=48;PV4=1,0.011,0.068,1 PL:DP:SP:GT:GQ 86,0,96:8:0:0/1:89 +chr11 85371776 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 85373746 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 85384199 . C CTGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 85386796 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 85394821 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 85403388 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 85403432 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 85418590 . GAACA G 6.55 . INDEL;DP=24;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,13;MQ=50;PV4=1,1.2e-05,1,1 PL:DP:SP:GT:GQ 43,0,155:20:0:0/1:46 +chr11 85418591 . AACAGACA AACA 83.5 . INDEL;DP=13;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,4;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 121,0,145:9:0:0/1:99 +chr11 85425925 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 85428627 . G C 23 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=0,17,0,10;MQ=50;PV4=1,1.1e-09,0.099,0.061 PL:DP:SP:GT:GQ 53,0,237:27:0:0/1:56 +chr11 85435730 . C T 99 . DP=45;AF1=0.5;CI95=0.5,0.5;DP4=19,10,9,4;MQ=48;PV4=1,0.012,5.1e-21,1 PL:DP:SP:GT:GQ 227,0,255:42:0:0/1:99 +chr11 85436352 . G A 99 . DP=47;AF1=0.5;CI95=0.5,0.5;DP4=7,12,6,18;MQ=46;PV4=0.51,0.026,2.4e-13,1 PL:DP:SP:GT:GQ 255,0,255:43:3:0/1:99 +chr11 85436500 . T C 20 . DP=65;AF1=0.5;CI95=0.5,0.5;DP4=15,20,6,3;MQ=49;PV4=0.27,1.8e-11,5.2e-06,1 PL:DP:SP:GT:GQ 50,0,255:44:6:0/1:53 +chr11 85436699 . A G 99 . DP=46;AF1=1;CI95=1,1;DP4=0,1,7,10;MQ=49;PV4=1,0.31,0.38,1 PL:DP:SP:GT:GQ 166,28,0:18:0:1/1:99 +chr11 85447611 . T C 99 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=1,12,1,6;MQ=48;PV4=1,0.0084,1.7e-07,1 PL:DP:SP:GT:GQ 139,0,255:20:0:0/1:99 +chr11 85448591 . G C 7.8 . DP=14;AF1=0.5004;CI95=0.5,0.5;DP4=2,0,4,0;MQ=48;PV4=1,0.35,0.21,1 PL:DP:SP:GT:GQ 37,0,27:6:0:0/1:30 +chr11 85454557 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 85463759 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 85491207 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 85496107 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 85497688 . G GTCCTTCAGTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 85503352 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 85505298 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 85515294 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 85519058 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 85535362 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 85547490 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 85593756 . C A 4.13 . DP=25;AF1=0.4998;CI95=0.5,0.5;DP4=0,12,0,4;MQ=49;PV4=1,0.00053,0.019,1 PL:DP:SP:GT:GQ 32,0,214:16:0:0/1:35 +chr11 85610106 . TA TAGTCTGATAAA 12.7 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 85644220 . T A 3.98 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 33,6,0:2:0:1/1:49 +chr11 85646097 . CG CGTTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 85675510 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 85703855 . TAT TATACTAAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 85753527 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 85785452 . gtg gTGTGAtg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 85797588 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 85802327 . ga gATCa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 85826594 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 85833807 . c cGG 8.19 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 85842767 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 85854150 . TGA TGACGAAGAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 85870064 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 85870067 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 85894631 . a aGCCAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 85906933 . GC GCCC 3.25 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=2,1,1,0;MQ=50;PV4=1,1,1,0.16 PL:DP:SP:GT:GQ 38,0,92:4:0:0/1:41 +chr11 85910756 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 85919859 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 85920938 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 85935020 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 85951493 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 85953498 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 85954831 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 85977117 . G A 99 . DP=13;AF1=1;CI95=1,1;DP4=0,0,7,3;MQ=45 PL:DP:SP:GT:GQ 216,30,0:10:0:1/1:99 +chr11 85989378 . T A 5.46 . DP=14;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,2,0;MQ=46;PV4=1,0.16,0.23,1 PL:DP:SP:GT:GQ 34,0,27:3:0:0/1:29 +chr11 85989684 . GGCTG GG 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 85994151 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 86003702 . g gGGGCAAC 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 86036168 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 86086388 . C T 11.3 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,2;MQ=47;PV4=1,0.02,0,0.27 PL:DP:SP:GT:GQ 41,0,41:3:0:0/1:41 +chr11 86097059 . A C 7.8 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=47;PV4=1,0.27,0.16,1 PL:DP:SP:GT:GQ 37,0,52:6:0:0/1:40 +chr11 86097064 . A T 19.1 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=5,0,4,0;MQ=48;PV4=1,0.2,0.16,0.066 PL:DP:SP:GT:GQ 49,0,85:9:0:0/1:52 +chr11 86110322 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 86123467 . G A 99 . DP=44;AF1=0.5;CI95=0.5,0.5;DP4=3,11,12,13;MQ=48;PV4=0.17,4.9e-06,0.00079,0.43 PL:DP:SP:GT:GQ 224,0,255:39:8:0/1:99 +chr11 86125848 . CGA CGAGA 5.09 . INDEL;DP=10;AF1=0.501;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.061 PL:DP:SP:GT:GQ 41,0,24:3:0:0/1:27 +chr11 86135189 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 86157318 . C A 30 . DP=38;AF1=0.5;CI95=0.5,0.5;DP4=17,2,8,0;MQ=49;PV4=1,0.088,1.6e-07,1 PL:DP:SP:GT:GQ 60,0,222:27:0:0/1:63 +chr11 86160146 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 86161388 . C G 99 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=6,10,3,11;MQ=49;PV4=0.44,2.5e-09,0.00011,0.27 PL:DP:SP:GT:GQ 130,0,255:30:4:0/1:99 +chr11 86172078 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 86174129 . G C 40.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=43 PL:DP:SP:GT:GQ 72,6,0:2:0:1/1:49 +chr11 86198539 . TTTC TCCAATGGACTTC,TTTCGGTTC 7.35 . INDEL;DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 52,11,44,8,0,41:2:0:1/1:41 +chr11 86209327 . CA CATAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 86214593 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 86216974 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 86235204 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 86243822 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 86265389 . CTC CTCAGAAGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 86280034 . t tTGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 86283598 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 86307719 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 86320161 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 86320165 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 86335805 . T TGGA 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 86340596 . A C 3.54 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,35:2:0:0/1:33 +chr11 86346383 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 86351180 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 86359639 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 86376877 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 86424214 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 86453137 . CTC CTCAGATCGTTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 86466122 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 86528204 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 86529130 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 86532422 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 86533235 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 86562043 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 86568992 . C A 20.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=45 PL:DP:SP:GT:GQ 52,6,0:2:0:1/1:49 +chr11 86577180 . ACA ACATGGTGTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 86610994 . T A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 86611766 . caga cAGAaga 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 86631747 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 86645449 . c cTTTT 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 86646377 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 86662797 . T G 6.98 . DP=8;AF1=0.4999;CI95=0.5,0.5;DP4=1,2,0,3;MQ=48;PV4=1,0.18,0.1,0.1 PL:DP:SP:GT:GQ 36,0,71:6:0:0/1:39 +chr11 86662868 . G A 6.98 . DP=16;AF1=0.4999;CI95=0.5,0.5;DP4=4,3,4,0;MQ=50;PV4=0.24,0.038,0.16,0.37 PL:DP:SP:GT:GQ 36,0,182:11:6:0/1:39 +chr11 86691005 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 86720249 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 86730675 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 86736503 . A G 3.01 . DP=7;AF1=0.4997;CI95=0.5,0.5;DP4=1,3,2,0;MQ=48;PV4=0.4,0.019,0.035,0.38 PL:DP:SP:GT:GQ 30,0,145:6:4:0/1:33 +chr11 86777178 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 86806071 . C G 26.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 58,6,0:2:0:1/1:49 +chr11 86806279 . CAA CA 18.3 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 57,6,0:2:0:1/1:49 +chr11 86807104 . C A 24.1 . DP=6;AF1=0.5129;CI95=0.5,0.5;DP4=0,1,1,3;MQ=49;PV4=1,0.11,0.25,1 PL:DP:SP:GT:GQ 54,0,13:5:0:0/1:16 +chr11 86807157 . A ATATGG 3.96 . INDEL;DP=4;AF1=0.5336;CI95=0.5,1;DP4=1,0,1,0;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 39,0,9:2:0:0/1:12 +chr11 86854469 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 86858553 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 86865146 . a aTGGC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 86961039 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 86965007 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 86970175 . T C 8.64 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,2;MQ=48;PV4=1,0.25,0.21,0.43 PL:DP:SP:GT:GQ 38,0,54:4:0:0/1:41 +chr11 86999351 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 87020504 . A C 10.4 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=4,0,3,0;MQ=49;PV4=1,1,0.14,1 PL:DP:SP:GT:GQ 40,0,52:7:0:0/1:43 +chr11 87032215 . T C 13.9 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr11 87036285 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 87059812 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 87065853 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 87075558 . CA CACAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 87146830 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 87151348 . C G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 87151719 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 87192077 . C T 7.8 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,42:2:0:0/1:39 +chr11 87192254 . G GGGAAAA 12.7 . INDEL;DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 87199260 . a aAAAGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 87206766 . GA GATGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 87209305 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 87233000 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 87240081 . C T 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 87267117 . CT CTTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 87274345 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 87274366 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 87277161 . G GCTAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 87313801 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 87416513 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 87428825 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 87455638 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 87458726 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 87468325 . A C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 87487383 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 87551027 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 87555745 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 87560425 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 87571913 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 87576403 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 87607199 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 87611540 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 87745272 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 87758501 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 87794956 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 87806285 . c cGT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 87816142 . tc tCAAACACGGc 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 87828765 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 87856208 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 87858697 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 87882936 . GTCAC GTCACCACTCAC 15.6 . INDEL;DP=24;AF1=0.5;CI95=0.5,0.5;DP4=0,7,2,0;MQ=50;PV4=0.028,0.13,0.026,1 PL:DP:SP:GT:GQ 53,0,183:9:16:0/1:56 +chr11 87887050 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 87893921 . cc cCATTc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 87906013 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 87916432 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 87981772 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 87995407 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 88010998 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 88011213 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 88020714 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 88022331 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 88027732 . TTCTAT TT 3.25 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.27 PL:DP:SP:GT:GQ 38,0,46:3:0:0/1:40 +chr11 88045583 . A G 99 . DP=34;AF1=1;CI95=1,1;DP4=1,1,15,13;MQ=48;PV4=1,1,0.11,1 PL:DP:SP:GT:GQ 255,48,0:30:0:1/1:99 +chr11 88045815 . CTTT CTTTT 12.5 . INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 51,6,0:2:0:1/1:49 +chr11 88045818 . T TG 3.25 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 88063115 . c cGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 88067501 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 88093114 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 88105196 . tttagcatt ttt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 88105312 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 88135408 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 88141270 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 88142353 . A G 19.1 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,10,1,5;MQ=42;PV4=0.37,6.9e-05,0.13,0.21 PL:DP:SP:GT:GQ 49,0,180:16:0:0/1:52 +chr11 88144025 . cttccttttccttttc cttccttttc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 88251639 . AA AATTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 88273472 . T TGTGTACAAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 88294006 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 88295214 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 88322895 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 88330322 . A C 20 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=3,0,5,0;MQ=49;PV4=1,0.14,0.019,0.15 PL:DP:SP:GT:GQ 50,0,53:8:0:0/1:51 +chr11 88338165 . G A 40 . DP=34;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=47 PL:DP:SP:GT:GQ 72,9,0:3:0:1/1:63 +chr11 88392016 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 88425860 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 88442817 . C T 14.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=48 PL:DP:SP:GT:GQ 46,6,0:2:0:1/1:49 +chr11 88451977 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 88466860 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 88483894 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 88501104 . t tCTCACACA 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=48 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 88603484 . GAA GAATTTAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 88614821 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 88616797 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 88638124 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 88667321 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 88680454 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 88700525 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 88775116 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 88780565 . T TTA 3.25 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.075 PL:DP:SP:GT:GQ 38,0,109:4:0:0/1:41 +chr11 88795201 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 88801015 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 88815456 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 88870174 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 88885981 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 88943130 . g gTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 88954094 . G GGGTCAACTC 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 88955860 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 89063351 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 89070598 . T C 6.98 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,44:2:0:0/1:38 +chr11 89073269 . G A 6.98 . DP=5;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,2,0;MQ=48;PV4=1,0.22,0.17,1 PL:DP:SP:GT:GQ 36,0,45:4:0:0/1:38 +chr11 89073358 . A G 3.54 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=0,2,0,1;MQ=41;PV4=1,0,1,1 PL:DP:SP:GT:GQ 31,0,64:3:0:0/1:34 +chr11 89088210 . TT TTGT 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 89124541 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 89133211 . C G 3.02 . DP=2;AF1=0.5013;CI95=0.5,0.5;DP4=0,1,0,1;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,22:2:0:0/1:24 +chr11 89133256 . C T 5.46 . DP=3;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,1;MQ=48;PV4=1,0.48,0,1 PL:DP:SP:GT:GQ 34,0,77:3:0:0/1:37 +chr11 89133449 . C T 8.65 . DP=7;AF1=0.5001;CI95=0.5,0.5;DP4=0,1,0,2;MQ=47;PV4=1,0.13,0.41,1 PL:DP:SP:GT:GQ 38,0,32:3:0:0/1:34 +chr11 89169022 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 89173977 . T A 3.15 . DP=5;AF1=0.5333;CI95=0.5,1;DP4=0,1,0,2;MQ=49;PV4=1,1,0.17,1 PL:DP:SP:GT:GQ 30,0,9:3:0:0/1:12 +chr11 89223297 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 89250158 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 89251436 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 89265264 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 89302833 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 89305296 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 89340263 . T TTTCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 89346122 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 89375297 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 89384205 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 89395288 . A G 7.97 . DP=2;AF1=0.5263;CI95=0.5,1;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,10:2:0:0/1:13 +chr11 89409227 . G GCA 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 89431890 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 89449174 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 89484043 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 89502007 . Ggagagagagagagagagagagagagaga Ggagagagagagagagagagagagaga 3.25 . INDEL;DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,2;MQ=34;PV4=1,0.43,0.41,1 PL:DP:SP:GT:GQ 38,0,74:5:0:0/1:41 +chr11 89507723 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 89518939 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 89531540 . C T 25 . DP=5;AF1=0.5002;CI95=0.5,0.5;DP4=1,0,1,2;MQ=46;PV4=1,0.051,0.18,0.3 PL:DP:SP:GT:GQ 55,0,30:4:0:0/1:33 +chr11 89534841 . A G,C 6.02 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 49,19,35,13,0,35:3:0:1/1:49 +chr11 89552260 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 89583858 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 89588116 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 89588809 . T TAGAAAAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 89590900 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 89622365 . TG TGCACAG 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.14 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr11 89645144 . TTGCA T 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 89676371 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 89680157 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 89681744 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 89693663 . TG TGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 89715029 . TC TCGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 89727082 . G C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 89786347 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 89829385 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 89860170 . T A 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 89861634 . g gTGCTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 89862761 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 89868064 . T A 37 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,6;MQ=49;PV4=1,0.068,0.12,0.32 PL:DP:SP:GT:GQ 67,0,42:8:0:0/1:45 +chr11 89892347 . A T 3.56 . DP=5;AF1=0.503;CI95=0.5,0.5;DP4=1,0,2,0;MQ=49;PV4=1,0.12,0.17,1 PL:DP:SP:GT:GQ 31,0,19:3:0:0/1:22 +chr11 89896807 . C G 4.13 . DP=11;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,2;MQ=45;PV4=1,0.4,0.17,1 PL:DP:SP:GT:GQ 32,0,38:4:0:0/1:34 +chr11 89896815 . T G 20.8 . DP=12;AF1=0.95;CI95=0.5,1;DP4=0,1,0,5;MQ=49;PV4=1,1,1,0.42 PL:DP:SP:GT:GQ 49,0,0:6:0:1/1:10 +chr11 89896817 . T G 4.8 . DP=12;AF1=0.5049;CI95=0.5,0.5;DP4=0,2,0,3;MQ=49;PV4=1,1,0.074,1 PL:DP:SP:GT:GQ 33,0,17:5:0:0/1:20 +chr11 89902216 . T TTCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 89927013 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 89927358 . g gCTGCTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 89962327 . ag aGGGTCg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 90016648 . A C 7.8 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=0,2,3,0;MQ=48;PV4=0.1,0.01,0.25,1 PL:DP:SP:GT:GQ 37,0,71:5:10:0/1:40 +chr11 90062968 . TC TCGAC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 90127096 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 90152780 . a aATG 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 90183735 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 90199487 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 90207088 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 90340851 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 90377423 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 90390950 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 90420134 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 90428375 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 90428768 . a aCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 90534941 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 90557083 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 90572065 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 90578250 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 90581384 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 90588378 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 90648205 . A ACTGATG 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 90681435 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 90691580 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 90721388 . a aGG 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 90722057 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 90735855 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 90741438 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 90746475 . gcac g 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 90765391 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 90812041 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 90829622 . t tGTGTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 90831921 . c cTCATAACCCACAAG 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 90832027 . T TTTC 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 90849279 . C G 28.8 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=46 PL:DP:SP:GT:GQ 60,6,0:2:0:1/1:49 +chr11 90849496 . T C 11.3 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=50 PL:DP:SP:GT:GQ 43,9,0:3:0:1/1:63 +chr11 90922713 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 90970693 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 91013711 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 91071278 . aa aAGGTAGa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 91076860 . AA AAGGTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 91085181 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 91188777 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 91206687 . gaa gAAACGGAaa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 91208877 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 91237010 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 91252306 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 91264608 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 91264612 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 91285620 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 91321957 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 91346317 . A G 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 91356404 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 91388372 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 91420613 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 91430788 . G GTAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 91437126 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 91445093 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 91498456 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 91586985 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 91593484 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 91599551 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 91608738 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 91615400 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 91615514 . TT TTCCGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 91672743 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 91690271 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 91782498 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 91796380 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 91878718 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 91893856 . TC TCCACACAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 91894257 . CCT CCTGAGGTACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 91909058 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 91911006 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 91923510 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 91926758 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 91932527 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 91961185 . AACTT A 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 91965829 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 92028976 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 92034539 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 92038969 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 92041582 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 92042406 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 92064400 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 92080449 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 92085280 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 92103124 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 92112854 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 92146118 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 92153064 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 92153350 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 92174044 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 92181227 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 92216326 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 92226819 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 92242941 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 92246881 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 92288922 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 92311079 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 92312989 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 92325870 . ataactg a 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 92344252 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 92345755 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 92351203 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 92370502 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 92394135 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 92398300 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 92398691 . C CAAGCCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 92404448 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 92487319 . t tAGAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 92496947 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 92531138 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 92555065 . A G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 92576822 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 92577031 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 92580886 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 92610332 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 92649930 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 92659521 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 92664425 . A AGGATTCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 92680065 . C A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 92704527 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 92704829 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 92717588 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 92739494 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 92771646 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 92806994 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 92821529 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 92828018 . g gAGGTGACGTA 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 92830868 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 92832727 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 92843079 . c cGG 5.08 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 92849774 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 92865769 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 92888621 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 92903319 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 92912370 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 92916151 . T TAA 7.35 . INDEL;DP=4;AF1=0.5006;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,26:2:0:0/1:29 +chr11 92928271 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 92932662 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 92946618 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 92952040 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 93001414 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 93009192 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 93026706 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 93067603 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 93083192 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 93084155 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 93088512 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 93126167 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 93212254 . C T 99 . DP=15;AF1=1;CI95=1,1;DP4=0,0,12,0;MQ=44 PL:DP:SP:GT:GQ 174,36,0:12:0:1/1:99 +chr11 93215128 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 93221813 . cggg cg 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 93273562 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 93280609 . a aAATG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 93292925 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 93292935 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 93298785 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 93343318 . C A 8.64 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,3,3,0;MQ=49;PV4=0.1,0.12,0.079,1 PL:DP:SP:GT:GQ 38,0,72:6:10:0/1:41 +chr11 93351328 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 93370619 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 93371382 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 93378106 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 93383564 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 93396639 . t tCTGGCGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 93403405 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 93404405 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 93439700 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 93447949 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 93464087 . A G 6.4 . DP=5;AF1=0.5335;CI95=0.5,1;DP4=1,0,2,0;MQ=47;PV4=1,1,0.11,1 PL:DP:SP:GT:GQ 35,0,9:3:0:0/1:12 +chr11 93465238 . T G 6.98 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,1;MQ=45;PV4=1,0.052,0.26,0.089 PL:DP:SP:GT:GQ 36,0,41:3:0:0/1:38 +chr11 93465394 . A ATG 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.024 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr11 93466791 . T C 18.1 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,3;MQ=48;PV4=0.14,0.085,0.038,1 PL:DP:SP:GT:GQ 48,0,40:7:8:0/1:42 +chr11 93469531 . A G 28 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,4;MQ=49;PV4=1,0.019,0.24,1 PL:DP:SP:GT:GQ 58,0,58:6:0:0/1:58 +chr11 93494714 . T G 5.46 . DP=38;AF1=0.4999;CI95=0.5,0.5;DP4=12,2,0,5;MQ=50;PV4=0.0018,0.022,2.1e-05,0.32 PL:DP:SP:GT:GQ 34,0,218:19:27:0/1:37 +chr11 93499648 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 93516018 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 93527095 . T TGGGGAC 5.1 . INDEL;DP=9;AF1=0.5031;CI95=0.5,0.5;DP4=1,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,19:3:0:0/1:22 +chr11 93527219 . T C 59.1 . DP=26;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=47 PL:DP:SP:GT:GQ 92,18,0:6:0:1/1:90 +chr11 93527239 . T A 31 . DP=18;AF1=0.502;CI95=0.5,0.5;DP4=0,1,0,4;MQ=47;PV4=1,0.053,0.19,1 PL:DP:SP:GT:GQ 61,0,21:5:0:0/1:24 +chr11 93530682 . A T 20.1 . DP=19;AF1=0.502;CI95=0.5,0.5;DP4=2,0,3,0;MQ=48;PV4=1,1,0.051,1 PL:DP:SP:GT:GQ 50,0,21:5:0:0/1:24 +chr11 93530848 . A G 13.2 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=3,6,4,0;MQ=49;PV4=0.07,0.052,1.7e-07,1 PL:DP:SP:GT:GQ 43,0,207:13:12:0/1:46 +chr11 93535035 . A C 13.3 . DP=6;AF1=0.508;CI95=0.5,0.5;DP4=0,1,3,0;MQ=48;PV4=0.25,0.17,1,0.21 PL:DP:SP:GT:GQ 43,0,15:4:0:0/1:18 +chr11 93539022 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 93540706 . A C 41 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=7,0,0,5;MQ=47;PV4=0.0013,0.0084,5.1e-05,1 PL:DP:SP:GT:GQ 71,0,170:12:29:0/1:74 +chr11 93540914 . T G 11.3 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=50 PL:DP:SP:GT:GQ 43,9,0:3:0:1/1:63 +chr11 93544697 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 93557297 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 93557302 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 93569643 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 93583751 . G T 23.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=44 PL:DP:SP:GT:GQ 55,6,0:2:0:1/1:49 +chr11 93623035 . C CATA 12.7 . INDEL;DP=7;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 93623054 . T A 27.5 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=49 PL:DP:SP:GT:GQ 60,12,0:4:0:1/1:72 +chr11 93628713 . TCAACA TCA 3.25 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,44:2:0:0/1:40 +chr11 93634834 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 93668292 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 93674731 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 93698187 . AT ATTAGTCTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 93703590 . C CGGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 93717719 . t tAG 11.8 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 93751506 . A G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 93765053 . C CCCGCCAACA 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=47 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 93811521 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 93848194 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 93862493 . A C 49.1 . DP=20;AF1=1;CI95=0.5,1;DP4=0,0,5,1;MQ=49 PL:DP:SP:GT:GQ 82,18,0:6:0:1/1:90 +chr11 93886838 . G C 33.5 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=49 PL:DP:SP:GT:GQ 66,12,0:4:0:1/1:72 +chr11 93913458 . T C 54.4 . DP=35;AF1=1;CI95=0.5,1;DP4=0,1,0,8;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 87,13,0:9:0:1/1:65 +chr11 93913677 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 93921929 . T C 5.46 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 93962706 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 94000893 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 94018091 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 94091125 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 94098961 . a aCGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 94136484 . AG AGGAAGCAACTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 94138278 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 94170484 . T C 6.79 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=42 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr11 94177856 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 94182437 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 94194214 . G T 4.77 . DP=7;AF1=0.4999;CI95=0.5,0.5;DP4=0,3,0,2;MQ=49;PV4=1,0.27,0.0013,0.071 PL:DP:SP:GT:GQ 33,0,57:5:0:0/1:36 +chr11 94197260 . A G 3.01 . DP=10;AF1=0.4997;CI95=0.5,0.5;DP4=7,0,3,0;MQ=49;PV4=1,0.024,1.2e-05,0.25 PL:DP:SP:GT:GQ 30,0,163:10:0:0/1:33 +chr11 94201069 . T G 3.07 . DP=6;AF1=0.5126;CI95=0.5,0.5;DP4=0,1,0,2;MQ=49;PV4=1,0.33,1,0.17 PL:DP:SP:GT:GQ 30,0,13:3:0:0/1:16 +chr11 94204888 . A C 8.64 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=2,0,0,3;MQ=49;PV4=0.1,0.004,0,1 PL:DP:SP:GT:GQ 38,0,68:5:10:0/1:41 +chr11 94212048 . C T 5.46 . DP=16;AF1=0.4999;CI95=0.5,0.5;DP4=2,8,0,3;MQ=49;PV4=1,0.0097,0.00065,1 PL:DP:SP:GT:GQ 34,0,255:13:0:0/1:37 +chr11 94219120 . C G 7.8 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,1;MQ=47;PV4=0.4,0.033,0.11,0.48 PL:DP:SP:GT:GQ 37,0,105:5:0:0/1:40 +chr11 94225875 . CT CTGAGAAAGACGT 7.35 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 94225920 . C T 49 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=15,2,2,4;MQ=49;PV4=0.021,0.00057,2.3e-05,1 PL:DP:SP:GT:GQ 79,0,255:23:17:0/1:82 +chr11 94228680 . C G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 94284136 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 94300671 . G T 3.54 . DP=7;AF1=0.4998;CI95=0.5,0.5;DP4=1,2,2,0;MQ=48;PV4=0.4,0.0029,0.002,1 PL:DP:SP:GT:GQ 31,0,82:5:4:0/1:34 +chr11 94308319 . C T 6.02 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr11 94310420 . T A 3.41 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 32,6,0:2:0:1/1:49 +chr11 94316039 . C G 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 94326627 . G A 54 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=3,0,6,0;MQ=48;PV4=1,0.00011,0.00073,0.46 PL:DP:SP:GT:GQ 84,0,93:9:0:0/1:86 +chr11 94339403 . T TCC 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 94340852 . T C 3.6 . DP=12;AF1=0.5127;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,1,1,0.026 PL:DP:SP:GT:GQ 31,0,13:3:0:0/1:16 +chr11 94340853 . T C 22 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,4;MQ=48;PV4=1,0.063,0.48,0.35 PL:DP:SP:GT:GQ 52,0,55:7:0:0/1:53 +chr11 94342137 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 94349610 . TA TAACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 94351066 . T TAAGA 5.08 . INDEL;DP=8;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr11 94353242 . A G 5.46 . DP=32;AF1=0.4999;CI95=0.5,0.5;DP4=15,2,0,6;MQ=49;PV4=0.00028,0.0039,0.0034,1 PL:DP:SP:GT:GQ 34,0,255:23:36:0/1:37 +chr11 94354019 . T C 11.3 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=2,0,3,0;MQ=49;PV4=1,0.0022,0.14,0.28 PL:DP:SP:GT:GQ 41,0,77:5:0:0/1:44 +chr11 94363634 . t tCAGGGTGGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 94378708 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 94420690 . a aTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 94425398 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 94442375 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 94458818 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 94476852 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 94499954 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 94519521 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 94561921 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 94562403 . tg tGAACCAGAg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 94597739 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 94600348 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 94659285 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 94689779 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 94697764 . CCA CCAGGGAGCA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 94708495 . T A 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 94714056 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 94717162 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 94731414 . TC TCGGTAGC 3.25 . INDEL;DP=16;AF1=0.5;CI95=0.5,0.5;DP4=2,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,108:4:0:0/1:41 +chr11 94733639 . G T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 94759055 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 94771882 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 94775712 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 94808381 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 94835236 . t tGGGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 94836209 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 94838948 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 94845282 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 94851686 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 94854575 . t tGGGAGAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 94861847 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 94878460 . TA TAGGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 94884841 . T TAC 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 94917522 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 94926397 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 94928098 . CA CAGTGTGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 94933078 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 94993803 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 95089279 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 95103700 . TTT TTTGTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 95167568 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 95191810 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 95191843 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 95251183 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 95287973 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 95292395 . Tttcttctt TTTCttcttctt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 95297519 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 95301867 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 95319735 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 95346694 . c cTCTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 95370150 . cctgt c 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 95374554 . C G 43.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=42 PL:DP:SP:GT:GQ 75,6,0:2:0:1/1:49 +chr11 95423374 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 95462946 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 95482165 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 95498464 . ag aGACGGAGg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 95509037 . C G 3.54 . DP=8;AF1=0.4998;CI95=0.5,0.5;DP4=5,0,2,0;MQ=49;PV4=1,0.025,6.4e-06,1 PL:DP:SP:GT:GQ 31,0,150:7:0:0/1:34 +chr11 95519195 . A T 29 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=5,0,3,0;MQ=48;PV4=1,0.042,0.00051,1 PL:DP:SP:GT:GQ 59,0,146:8:0:0/1:62 +chr11 95521648 . A G 20 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=6,0,3,0;MQ=48;PV4=1,0.042,0.00029,1 PL:DP:SP:GT:GQ 50,0,157:9:0:0/1:53 +chr11 95525787 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 95532771 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 95546829 . T G 18.5 . DP=11;AF1=0.5554;CI95=0.5,1;DP4=0,1,0,3;MQ=48;PV4=1,1,0.19,1 PL:DP:SP:GT:GQ 48,0,7:4:0:0/1:10 +chr11 95550875 . A AAAGGTT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 95552672 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 95555630 . A C 4.26 . DP=9;AF1=0.5262;CI95=0.5,1;DP4=1,0,2,0;MQ=47;PV4=1,1,0.38,0.23 PL:DP:SP:GT:GQ 32,0,10:3:0:0/1:13 +chr11 95555635 . A C 19.5 . DP=7;AF1=0.5554;CI95=0.5,1;DP4=1,0,3,0;MQ=46;PV4=1,1,0.13,0.093 PL:DP:SP:GT:GQ 49,0,7:4:0:0/1:10 +chr11 95555864 . A ATGCCTTTAC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 95562327 . G A 3.01 . DP=24;AF1=0.4997;CI95=0.5,0.5;DP4=15,1,7,0;MQ=50;PV4=1,1.9e-10,1,0.42 PL:DP:SP:GT:GQ 30,0,255:23:0:0/1:33 +chr11 95641180 . a aGCTTAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 95646048 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 95677019 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 95683550 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 95705756 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 95781868 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 95785901 . ACA ACACTCCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 95813020 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 95816127 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 95826554 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 95827497 . G A 7.8 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 95829177 . A AAG 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 95838458 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 95846274 . A ATTTTGTTACG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 95848291 . GTT GTTCACCTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 95867472 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 95892281 . T TAATAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 95904498 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 95927601 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 95973764 . TCT TCTCTACAATACCT 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 95973779 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 96004367 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 96008721 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 96073935 . T TCTGTGAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 96085191 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 96092376 . C T 71 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,4;MQ=47;PV4=1,0.019,0.0058,1 PL:DP:SP:GT:GQ 101,0,107:7:0:0/1:99 +chr11 96106649 . TA TATCA 7.44 . INDEL;DP=4;AF1=0.5128;CI95=0.5,0.5;DP4=0,1,0,1;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,13:2:0:0/1:16 +chr11 96123734 . TG TGG 99 . INDEL;DP=14;AF1=0.5;CI95=0.5,0.5;DP4=7,0,7,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 138,0,109:14:0:0/1:99 +chr11 96125435 . CTTT CT 18.5 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,2;MQ=50;PV4=1,0.19,1,0.056 PL:DP:SP:GT:GQ 56,0,41:3:0:0/1:44 +chr11 96126824 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 96177649 . T G 7.59 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr11 96178256 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 96180738 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 96185133 . GTAAT GT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 96185490 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 96207027 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 96242523 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 96439101 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 96496399 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 96523186 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 96527887 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 96545227 . a aGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 96669743 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 96675736 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 96681976 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 96752273 . aaag aAAGACTaag 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 96808128 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 96830418 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 96866072 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 96876939 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 96904596 . TT TTCAGTAACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 97025600 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 97087433 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 97096729 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 97125615 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 97125909 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 97130552 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 97137923 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 97156987 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 97175306 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 97183824 . GTCTT G 9.05 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 97201908 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 97210023 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 97220218 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 97236190 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 97249718 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 97279071 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 97280900 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 97290413 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 97330870 . T TGCGCGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 97341246 . T TATG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 97349617 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 97359339 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 97373522 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 97460649 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 97481851 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 97523247 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 97549851 . A T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 97602760 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 97613898 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 97626041 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 97649508 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 97650667 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 97664368 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 97676787 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 97687338 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 97687576 . C G 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 97689764 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 97692883 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 97701623 . ct cTCGATGt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 97751924 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 97757745 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 97806147 . C CGCGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 97813716 . a aGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 97816012 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 97875040 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 97898728 . A G 12 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=47 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr11 97942150 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 97964811 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 98016057 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 98031128 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 98031130 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 98095256 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 98120779 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 98141662 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 98184600 . tt tTGAGTCGt 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 98239415 . ac aCGATc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 98241466 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 98250444 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 98254864 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 98292052 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 98295403 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 98300613 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 98303045 . at aTACGTCt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 98303786 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 98322702 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 98342958 . c cCAA 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 98356457 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 98383829 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 98389028 . C T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 98426948 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 98436183 . C CA 44.7 . INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,3;MQ=26 PL:DP:SP:GT:GQ 85,15,0:5:0:1/1:75 +chr11 98436527 . A C 38 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,2,1;MQ=43 PL:DP:SP:GT:GQ 70,9,0:3:0:1/1:63 +chr11 98479904 . a aAT 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 98493055 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 98494093 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 98495066 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 98522874 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 98551363 . tcagca tca 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 98586534 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 98599345 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 98676249 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 98676872 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 98757861 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 98812358 . C CGACTCAAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 98827129 . A AGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 98858766 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 98888560 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 98889795 . tcct tCCTTGCCcct 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 98900756 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 98969613 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 98982364 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 99002956 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 99042929 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 99051964 . tg tGCTCGCg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 99076074 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 99088699 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 99176446 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 99198444 . CT CTCTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 99221394 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 99221404 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 99234246 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 99281246 . GT GTCTCAGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 99309283 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 99313549 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 99374146 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 99413726 . A AACTAAACCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 99478847 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 99526214 . C CGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 99532367 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 99533278 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 99534087 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 99565134 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 99580730 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 99585946 . T TGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 99602395 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 99613669 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 99619169 . cag cAGTTCGGGag 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 99620497 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 99628539 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 99658620 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 99715541 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 99721246 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 99726016 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 99761887 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 99838530 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 99848381 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 99904881 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 99939951 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 99947939 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 99952378 . TG TGGGG 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 99969198 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 99969913 . c cTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 99979496 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 100001122 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 100039510 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 100045207 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 100058340 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 100063075 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 100064525 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 100075147 . a aCAGAGTGTAGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 100077365 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 100086680 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 100179531 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 100194357 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 100216337 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 100225651 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 100228171 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 100250200 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 100263327 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 100377454 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 100422701 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 100423623 . C CGT 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 100459077 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 100502297 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 100515763 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 100530741 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 100541448 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 100585283 . TTTTG TTTTGATTTG 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 100611475 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 100619041 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 100647699 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 100647704 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 100669586 . AAGC A 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 100692401 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 100701460 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 100723802 . T TGTGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 100739393 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 100743467 . TTC TTCATC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 100747674 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 100780335 . g gCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 100863354 . C A 91 . DP=61;AF1=0.5013;CI95=0.5,0.5;DP4=1,1,4,6;MQ=49;PV4=1,0.029,0.15,1 PL:DP:SP:GT:GQ 121,0,23:12:0:0/1:26 +chr11 100863496 . TGT TGCACCCGTGT 7.35 . INDEL;DP=8;AF1=0.5001;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,34:2:0:0/1:37 +chr11 100920902 . A ACGGTGT 6.56 . INDEL;DP=2;AF1=0.5016;CI95=0.5,0.5;DP4=0,1,0,1;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 43,0,22:2:0:0/1:25 +chr11 100923191 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 100933143 . T TAGTCAC 7.35 . INDEL;DP=5;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,1,0;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,28:2:0:0/1:31 +chr11 100970034 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 100985747 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 100985751 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 100994950 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 100995707 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 101005442 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 101014593 . TTA TTAGAGCTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 101016818 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 101058890 . T TCTCTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 101064861 . A AGAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 101090478 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 101090487 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 101117074 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 101120586 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 101129037 . TC TCC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 101148468 . a aAAGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 101154269 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 101176749 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 101196692 . t tATAGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 101205196 . A T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 101219286 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 101232653 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 101237510 . tt tTGAAAt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 101310323 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 101323856 . TAAGAAG TAAG 99 . INDEL;DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,6,1,5;MQ=50;PV4=1,0.14,1,0.26 PL:DP:SP:GT:GQ 200,0,161:12:0:0/1:99 +chr11 101325076 . A C 3.04 . DP=2;AF1=0.5061;CI95=0.5,0.5;DP4=1,0,0,1;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,16:2:0:0/1:19 +chr11 101326648 . aa aATAGAGGCa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 101341418 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 101344177 . G A 18.1 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=4,0,5,0;MQ=50;PV4=1,1.1e-09,0.097,0.23 PL:DP:SP:GT:GQ 48,0,132:9:0:0/1:51 +chr11 101347093 . A G 38 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=3,1,1,1;MQ=48;PV4=1,1,0,1 PL:DP:SP:GT:GQ 68,0,98:6:0:0/1:71 +chr11 101359750 . G A 99 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=10,6,5,7;MQ=48;PV4=0.45,2.4e-05,5.9e-07,1 PL:DP:SP:GT:GQ 184,0,255:28:4:0/1:99 +chr11 101363617 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 101368926 . TC TCACGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 101369947 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 101386444 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 101464721 . T C 26 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=47;PV4=1,0.25,0,1 PL:DP:SP:GT:GQ 56,0,67:4:0:0/1:59 +chr11 101519416 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 101622649 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 101623144 . g gTGAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 101703087 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 101737389 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 101771248 . G A 99 . DP=29;AF1=1;CI95=1,1;DP4=1,0,12,12;MQ=44;PV4=1,0.0026,5.9e-07,0.033 PL:DP:SP:GT:GQ 255,25,0:25:0:1/1:99 +chr11 101778195 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 101786916 . T TGGA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 101795573 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 101818917 . T TCTGTCTCCTC 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 101833950 . C T 10.4 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,4,0,3;MQ=49;PV4=0.5,1,1.3e-05,0.18 PL:DP:SP:GT:GQ 40,0,97:9:3:0/1:43 +chr11 101834076 . A G 85 . DP=35;AF1=0.5;CI95=0.5,0.5;DP4=17,2,0,11;MQ=48;PV4=1.4e-06,1.2e-05,6.3e-08,0.33 PL:DP:SP:GT:GQ 115,0,255:30:58:0/1:99 +chr11 101843069 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 101857758 . G A 32.5 . DP=26;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=49 PL:DP:SP:GT:GQ 65,12,0:4:0:1/1:72 +chr11 101868319 . C G 45.1 . DP=13;AF1=0.505;CI95=0.5,0.5;DP4=2,0,4,0;MQ=45;PV4=1,1,0.15,1 PL:DP:SP:GT:GQ 75,0,17:6:0:0/1:20 +chr11 101879489 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 101954065 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 101960224 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 101981834 . CA CAAACCACCAA 3.25 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=2,1,1,0;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,84:4:0:0/1:41 +chr11 101981836 . T C 6.2 . DP=7;AF1=0.4999;CI95=0.5,0.5;DP4=2,1,3,0;MQ=49;PV4=1,0.2,1,1 PL:DP:SP:GT:GQ 35,0,65:6:0:0/1:38 +chr11 101985610 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 102088976 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 102166546 . GA GATA 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,39:2:0:0/1:41 +chr11 102177053 . AA AACGGAACA 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,1;MQ=50;PV4=1,1,1,0.45 PL:DP:SP:GT:GQ 38,0,92:4:0:0/1:41 +chr11 102187304 . C A 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 102195121 . A C 5.29 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr11 102195276 . T C 13.2 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=4,3,1,3;MQ=49;PV4=0.55,0.15,0.0036,1 PL:DP:SP:GT:GQ 43,0,141:11:3:0/1:46 +chr11 102196176 . TTG TTGTG 7.62 . INDEL;DP=15;AF1=0.543;CI95=0.5,1;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,8:2:0:0/1:11 +chr11 102196177 . TGG TGTTCCGG 12.7 . INDEL;DP=14;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 102196178 . G GTTACACCT 3.81 . INDEL;DP=14;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 102196181 . CTAAAATTAAT CCGTTAAAATTAAT 5.09 . INDEL;DP=12;AF1=0.5016;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,22:3:0:0/1:25 +chr11 102201848 . G A 71 . DP=47;AF1=0.5;CI95=0.5,0.5;DP4=1,1,7,2;MQ=49;PV4=0.49,0.011,0.43,0.3 PL:DP:SP:GT:GQ 101,0,41:11:3:0/1:44 +chr11 102207851 . G A 44 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=46 PL:DP:SP:GT:GQ 76,9,0:3:0:1/1:63 +chr11 102221742 . GA GAGCA 7.35 . INDEL;DP=2;AF1=0.5004;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,28:2:0:0/1:31 +chr11 102272277 . G T 63 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=15,9,5,3;MQ=49;PV4=1,7e-06,4.1e-06,1 PL:DP:SP:GT:GQ 93,0,255:32:0:0/1:96 +chr11 102296839 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 102300899 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 102336846 . A T 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 102348854 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 102359768 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 102365830 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 102367543 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 102382609 . t tGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 102388274 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 102422534 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 102422544 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 102452250 . AAAG AAAGCTTTACCAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 102460034 . C A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 102464101 . AG AGTG 5.08 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.077 PL:DP:SP:GT:GQ 41,0,69:3:0:0/1:44 +chr11 102477395 . A G 99 . DP=55;AF1=0.5;CI95=0.5,0.5;DP4=20,12,6,8;MQ=49;PV4=0.33,7.1e-06,4e-16,1 PL:DP:SP:GT:GQ 174,0,255:46:5:0/1:99 +chr11 102489389 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 102489402 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 102490966 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 102493774 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 102504259 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 102516326 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 102544162 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 102546595 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 102559606 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 102567057 . A T 3.01 . DP=22;AF1=0.4997;CI95=0.5,0.5;DP4=7,2,4,0;MQ=50;PV4=1,0.014,0.07,1 PL:DP:SP:GT:GQ 30,0,196:13:0:0/1:33 +chr11 102567626 . C G 4.77 . DP=13;AF1=0.4999;CI95=0.5,0.5;DP4=0,8,0,4;MQ=50;PV4=1,1.3e-08,0.014,1 PL:DP:SP:GT:GQ 33,0,200:12:0:0/1:36 +chr11 102573396 . C G 54.3 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=48 PL:DP:SP:GT:GQ 87,15,0:5:0:1/1:75 +chr11 102573451 . T C 99 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=6,0,13,0;MQ=46;PV4=1,0.00027,0.00038,0.091 PL:DP:SP:GT:GQ 154,0,141:19:0:0/1:99 +chr11 102575152 . A T 13.2 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 45,9,0:3:0:1/1:63 +chr11 102584023 . T A 29 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=47 PL:DP:SP:GT:GQ 61,9,0:3:0:1/1:63 +chr11 102584464 . AGG AG 31.5 . INDEL;DP=8;AF1=0.5064;CI95=0.5,0.5;DP4=1,0,3,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 69,0,16:4:0:0/1:19 +chr11 102584607 . T C 5.46 . DP=26;AF1=0.4999;CI95=0.5,0.5;DP4=0,7,0,4;MQ=49;PV4=1,0.003,0.16,1 PL:DP:SP:GT:GQ 34,0,168:11:0:0/1:37 +chr11 102592049 . Ttgtgtgtgtgtgtgtgtgtgt TTGTGtgtgtgtgtgtgtgtgtgtgt 43 . INDEL;DP=5;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=28 PL:DP:SP:GT:GQ 83,12,0:4:0:1/1:72 +chr11 102593248 . T C 3.6 . DP=58;AF1=0.5127;CI95=0.5,0.5;DP4=0,1,1,1;MQ=50;PV4=1,0.33,0.33,1 PL:DP:SP:GT:GQ 31,0,13:3:0:0/1:16 +chr11 102595492 . G A 34.5 . DP=17;AF1=1;CI95=0.5,1;DP4=1,0,6,0;MQ=49;PV4=1,1,0.3,1 PL:DP:SP:GT:GQ 66,7,0:7:0:1/1:57 +chr11 102600198 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 102604705 . C A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 102645932 . A C 4.13 . DP=9;AF1=0.4998;CI95=0.5,0.5;DP4=3,0,0,2;MQ=49;PV4=0.1,0.12,0.073,1 PL:DP:SP:GT:GQ 32,0,94:5:10:0/1:35 +chr11 102647310 . T G 95 . DP=24;AF1=0.5002;CI95=0.5,0.5;DP4=3,0,17,0;MQ=47;PV4=1,0.079,0.091,1 PL:DP:SP:GT:GQ 125,0,32:20:0:0/1:35 +chr11 102654833 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 102660388 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 102665032 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 102665813 . A C 16.2 . DP=12;AF1=0.5128;CI95=0.5,0.5;DP4=1,0,3,0;MQ=47;PV4=1,0.32,1,0.49 PL:DP:SP:GT:GQ 46,0,13:4:0:0/1:16 +chr11 102668790 . ACAGCAGCAGCAGCAG ACAGCAGCAGCAG 6.55 . INDEL;DP=26;AF1=0.5;CI95=0.5,0.5;DP4=5,12,1,1;MQ=50;PV4=1,0.18,1,1 PL:DP:SP:GT:GQ 43,0,255:19:0:0/1:46 +chr11 102709425 . A G 14.2 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=3,9,0,6;MQ=50;PV4=0.51,9.7e-08,0.018,1 PL:DP:SP:GT:GQ 44,0,255:18:3:0/1:47 +chr11 102709459 . TTC T 6.55 . INDEL;DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,2;MQ=50;PV4=1,0.089,1,1 PL:DP:SP:GT:GQ 43,0,148:7:0:0/1:46 +chr11 102709461 . CAGAG CAG 88.5 . INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,5;MQ=50;PV4=1,0.26,0.2,1 PL:DP:SP:GT:GQ 126,0,115:9:0:0/1:99 +chr11 102710029 . A G 4.14 . DP=7;AF1=0.5024;CI95=0.5,0.5;DP4=0,2,0,2;MQ=47;PV4=1,1,0.21,0.35 PL:DP:SP:GT:GQ 32,0,20:4:0:0/1:23 +chr11 102713046 . C T 50 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,9;MQ=49;PV4=1,2.1e-06,0.01,1 PL:DP:SP:GT:GQ 80,0,171:16:0:0/1:83 +chr11 102751518 . A C 5.46 . DP=10;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,3,0;MQ=47;PV4=1,0.17,0.13,0.37 PL:DP:SP:GT:GQ 34,0,76:7:0:0/1:37 +chr11 102751686 . T C 19.1 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,4;MQ=49;PV4=1,0.18,0.3,1 PL:DP:SP:GT:GQ 49,0,61:7:0:0/1:52 +chr11 102791210 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 102820965 . G A 99 . DP=61;AF1=0.5;CI95=0.5,0.5;DP4=10,10,14,18;MQ=48;PV4=0.78,5.8e-12,2.8e-11,0.078 PL:DP:SP:GT:GQ 255,0,255:52:1:0/1:99 +chr11 102822733 . C T 28.2 . DP=24;AF1=0.5263;CI95=0.5,1;DP4=0,1,4,0;MQ=48;PV4=0.2,0.37,0.26,1 PL:DP:SP:GT:GQ 58,0,10:5:0:0/1:13 +chr11 102824810 . T A 4.77 . DP=4;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,43:2:0:0/1:36 +chr11 102841670 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 102846818 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 102937178 . T C 6.2 . DP=25;AF1=0.4999;CI95=0.5,0.5;DP4=8,2,4,0;MQ=49;PV4=1,0.018,0.0068,1 PL:DP:SP:GT:GQ 35,0,243:14:0:0/1:38 +chr11 102946342 . ct cTTCGAt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 102962426 . C G 6.21 . DP=3;AF1=0.5024;CI95=0.5,0.5;DP4=1,0,2,0;MQ=48;PV4=1,0,0.11,1 PL:DP:SP:GT:GQ 35,0,20:3:0:0/1:23 +chr11 102994337 . T TTGTGCACTAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 103003625 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 103012034 . t tCAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 103065057 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 103096249 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 103101359 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 103211146 . TA TACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 103218063 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 103330165 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 103369864 . aagaa aAGAAGCACagaa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 103387319 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 103389521 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 103405193 . agt aGTCCgt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 103407061 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 103457620 . catta c 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 103473245 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 103489601 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 103497216 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 103504650 . C G 3.01 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,31:2:0:0/1:30 +chr11 103560810 . at aTTt 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 103580068 . T TAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 103589202 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 103597897 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 103602221 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 103683649 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 103703907 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 103704331 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 103741659 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 103767948 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 103818344 . G C 46 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=6,0,7,0;MQ=49;PV4=1,1.5e-06,0.075,1 PL:DP:SP:GT:GQ 76,0,165:13:0:0/1:79 +chr11 103820849 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 103830580 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 103835471 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 103842082 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 103875337 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 103877383 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 103883207 . C T 3.41 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 32,6,0:2:0:1/1:49 +chr11 103932394 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 103964105 . A AGCTCCCGAAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 103975516 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 104012525 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 104030781 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 104117340 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 104146751 . CCTC CCTCGCTTTTCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 104156817 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 104200269 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 104214397 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 104232202 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 104238132 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 104239558 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 104295883 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 104295888 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 104303951 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 104311937 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 104335046 . G T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 104350763 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 104359141 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 104375662 . AG AGCGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 104388744 . A AAG 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 104428654 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 104482548 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 104484514 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 104488049 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 104517540 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 104522375 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 104522849 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 104556379 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 104588593 . ga gACTCCATa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 104608406 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 104680458 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 104703791 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 104748029 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 104763288 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 104774183 . A G 5.48 . DP=5;AF1=0.5031;CI95=0.5,0.5;DP4=1,0,2,0;MQ=48;PV4=1,0.061,0.2,1 PL:DP:SP:GT:GQ 34,0,19:3:0:0/1:22 +chr11 104780559 . C G 40.3 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=48 PL:DP:SP:GT:GQ 73,15,0:5:0:1/1:75 +chr11 104819327 . T C 10.8 . DP=22;AF1=0.5554;CI95=0.5,1;DP4=1,0,4,0;MQ=50;PV4=1,0.056,1,1 PL:DP:SP:GT:GQ 40,0,7:5:0:0/1:10 +chr11 104869708 . G C 52 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=3,10,1,5;MQ=48;PV4=1,0.00099,0.0022,0.29 PL:DP:SP:GT:GQ 82,0,255:19:0:0/1:85 +chr11 104872981 . C T 26.5 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=48 PL:DP:SP:GT:GQ 59,12,0:4:0:1/1:72 +chr11 104876710 . TT TTGTTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 104877717 . C G 10.4 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=3,0,2,0;MQ=48;PV4=1,0.17,0.11,1 PL:DP:SP:GT:GQ 40,0,87:5:0:0/1:43 +chr11 104877927 . T C 99 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=5,5,4,5;MQ=48;PV4=1,0.022,3.4e-05,1 PL:DP:SP:GT:GQ 151,0,252:19:0:0/1:99 +chr11 104897326 . T TAC 4.42 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 104902498 . A ACACTCTGAGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 104902848 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 104917422 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 104918110 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 104963849 . C T 93 . DP=15;AF1=0.5003;CI95=0.5,0.5;DP4=0,2,0,9;MQ=46;PV4=1,1,0.0058,1 PL:DP:SP:GT:GQ 123,0,29:11:0:0/1:32 +chr11 104972190 . C T 29 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=1,12,0,6;MQ=48;PV4=1,0.17,0.0035,1 PL:DP:SP:GT:GQ 59,0,172:19:0:0/1:62 +chr11 104986626 . a aCGTCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 105049278 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 105162564 . aac aACCCCac 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 105250156 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 105264924 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 105289394 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 105299505 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 105313833 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 105351769 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 105357932 . c cCGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 105367152 . AAG AAGGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 105370710 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 105377906 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 105412217 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 105438635 . tttac t 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 105470139 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 105487913 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 105490625 . TA TACAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 105495863 . G T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 105524093 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 105539474 . t tACGGTG 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 105566284 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 105576365 . a aAGACTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 105583540 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 105588179 . C T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 105602945 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 105623784 . T C 36 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=10,2,4,1;MQ=48;PV4=1,0.017,0.00013,0.23 PL:DP:SP:GT:GQ 66,0,237:17:0:0/1:69 +chr11 105641720 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 105649425 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 105666343 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 105684855 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 105702594 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 105804572 . TT TTTCAGT 5.08 . INDEL;DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.26 PL:DP:SP:GT:GQ 41,0,56:3:0:0/1:44 +chr11 105804740 . TCCA TCCAACCCA 7.36 . INDEL;DP=6;AF1=0.502;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,21:2:0:0/1:24 +chr11 105814532 . tT tTAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 105841205 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 105849593 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 105860478 . ttgct tt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 105893520 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 105899207 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 105939451 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 105948410 . A C 14.2 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=6,0,3,0;MQ=49;PV4=1,0.1,0.0019,0.43 PL:DP:SP:GT:GQ 44,0,137:9:0:0/1:47 +chr11 105950499 . G GTGCA 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,102:4:0:0/1:41 +chr11 106039161 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 106054012 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 106084600 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 106141603 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 106162850 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 106165359 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 106170412 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 106191710 . C G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 106246848 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 106251655 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 106258429 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 106271943 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 106280213 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 106283916 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 106317077 . G GACCGAGAGGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 106340933 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 106366277 . a aTGTTCAC 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 106396764 . tt tTCCTCt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 106451671 . a aCCACC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 106517034 . G T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 106521845 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 106523386 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 106571145 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 106583774 . a aCACACGCGTT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 106598086 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 106602013 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 106638369 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 106701423 . atg aTGATCtg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 106819208 . a aCTAT 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 106828296 . t tACAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 106836592 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 106843739 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 106844084 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 106856686 . C CGCAA 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,66:3:0:0/1:44 +chr11 106875472 . G T 3.41 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=44 PL:DP:SP:GT:GQ 32,6,0:2:0:1/1:49 +chr11 106878004 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 106878056 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 106895918 . C T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 106895987 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 106930951 . T TTTACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 106971908 . aa aAAAGa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 106997922 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 107004826 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 107007470 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 107022338 . t tGTTGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 107029354 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 107049981 . A ACCATACACAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 107082414 . C CGAGAAATGTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 107177858 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 107259997 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 107274696 . A AGGG 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=3,0,0,1;MQ=50;PV4=0.25,1,1,0.34 PL:DP:SP:GT:GQ 38,0,93:4:0:0/1:41 +chr11 107275035 . C A 5.29 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=49 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr11 107275143 . A G 99 . DP=33;AF1=1;CI95=1,1;DP4=0,1,10,19;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 207,71,0:30:0:1/1:99 +chr11 107312401 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 107321476 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 107341528 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 107377181 . aa aACa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 107380904 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 107382947 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 107393955 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 107403202 . TAGAG TAG 42.5 . INDEL;DP=14;AF1=0.5;CI95=0.5,0.5;DP4=0,11,0,3;MQ=50;PV4=1,1.3e-09,1,1 PL:DP:SP:GT:GQ 80,0,223:14:0:0/1:83 +chr11 107422503 . TG TGGCCAG 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 107441550 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 107448891 . GAGA G 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 107449997 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 107484667 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 107524081 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 107530225 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 107578440 . G GTGCTCACGGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 107578721 . C G 67 . DP=20;AF1=1;CI95=1,1;DP4=0,0,0,18;MQ=50 PL:DP:SP:GT:GQ 100,54,0:18:0:1/1:99 +chr11 107601343 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 107607312 . T C 26.3 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=50 PL:DP:SP:GT:GQ 59,15,0:5:0:1/1:75 +chr11 107641822 . AG AGACAACG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 107654089 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 107673629 . GAGAAG GAG 42.5 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=2,0,2,0;MQ=50;PV4=1,0.036,1,0.39 PL:DP:SP:GT:GQ 80,0,80:4:0:0/1:80 +chr11 107673710 . G A 41 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=11,0,11,0;MQ=49;PV4=1,1.1e-09,1.8e-07,1 PL:DP:SP:GT:GQ 71,0,212:22:0:0/1:74 +chr11 107673925 . C T 7.8 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=0,9,0,7;MQ=50;PV4=1,4e-12,1,1 PL:DP:SP:GT:GQ 37,0,206:16:0:0/1:40 +chr11 107676260 . C T 62 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=1,10,0,8;MQ=49;PV4=1,0.0014,0.0092,1 PL:DP:SP:GT:GQ 92,0,219:19:0:0/1:95 +chr11 107677399 . CAAA CAAAA 72.7 . INDEL;DP=10;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=50 PL:DP:SP:GT:GQ 113,15,0:5:0:1/1:75 +chr11 107677400 . AA AACA 7.35 . INDEL;DP=10;AF1=0.5004;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,28:2:0:0/1:31 +chr11 107677656 . T C 51 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,3;MQ=48;PV4=1,0.0039,0,1 PL:DP:SP:GT:GQ 81,0,190:10:0:0/1:84 +chr11 107679566 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 107693451 . G GTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 107695161 . t tATGAAACACG 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 107719222 . a aTTTCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 107750412 . tt tTGAGAGCATCCGt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 107768307 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 107768956 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 107798370 . AAGA AAGAGA 4.42 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 107817110 . G C 3.02 . DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 107824922 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 107853670 . gg gGTCAGTAg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 107904646 . C T 7.59 . DP=21;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr11 107905946 . gt gTCCt 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 107917087 . A G 4.61 . DP=16;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 107923354 . A C 5.47 . DP=6;AF1=0.5012;CI95=0.5,0.5;DP4=2,0,2,0;MQ=49;PV4=1,1,0.048,0.068 PL:DP:SP:GT:GQ 34,0,23:4:0:0/1:26 +chr11 108014661 . GTA GTAGTATA 7.35 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 108018121 . ACC ACCC 99 . INDEL;DP=49;AF1=0.5;CI95=0.5,0.5;DP4=14,14,4,11;MQ=50;PV4=0.2,1,1,1 PL:DP:SP:GT:GQ 207,0,255:43:7:0/1:99 +chr11 108042558 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 108047153 . C T 19.1 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,4;MQ=48;PV4=1,0.068,1,0.18 PL:DP:SP:GT:GQ 49,0,72:7:0:0/1:52 +chr11 108059000 . T C 5.29 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr11 108068307 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 108093208 . A T 5.46 . DP=41;AF1=0.4999;CI95=0.5,0.5;DP4=14,5,2,3;MQ=49;PV4=0.29,2e-06,0.00045,1 PL:DP:SP:GT:GQ 34,0,255:24:5:0/1:37 +chr11 108098459 . TAA T 99 . INDEL;DP=19;AF1=0.5;CI95=0.5,0.5;DP4=5,5,2,4;MQ=50;PV4=0.63,0.0057,1,0.42 PL:DP:SP:GT:GQ 143,0,255:16:2:0/1:99 +chr11 108158296 . T G 6.02 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=49 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr11 108183167 . A G 88.2 . DP=25;AF1=1;CI95=0.5,1;DP4=1,0,8,2;MQ=49;PV4=1,1,0.28,1 PL:DP:SP:GT:GQ 121,17,0:11:0:1/1:85 +chr11 108183250 . T TCTAAGTGA 5.08 . INDEL;DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.33 PL:DP:SP:GT:GQ 41,0,68:3:0:0/1:44 +chr11 108183253 . GA GGTCATTAA 3.25 . INDEL;DP=13;AF1=0.5002;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,31:4:0:0/1:33 +chr11 108190712 . T C 5.46 . DP=22;AF1=0.4999;CI95=0.5,0.5;DP4=4,1,5,0;MQ=49;PV4=1,1,0.15,1 PL:DP:SP:GT:GQ 34,0,50:10:0:0/1:37 +chr11 108199995 . A G 13.2 . DP=11;AF1=0.5025;CI95=0.5,0.5;DP4=0,2,0,3;MQ=45;PV4=1,1,0.047,1 PL:DP:SP:GT:GQ 43,0,20:5:0:0/1:23 +chr11 108206531 . A C 22 . DP=7;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=49 PL:DP:SP:GT:GQ 54,9,0:3:0:1/1:63 +chr11 108223235 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 108224658 . A C 9.52 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=49;PV4=1,0.1,0.0081,1 PL:DP:SP:GT:GQ 39,0,81:6:0:0/1:42 +chr11 108225483 . C T 3.01 . DP=9;AF1=0.4997;CI95=0.5,0.5;DP4=7,0,2,0;MQ=49;PV4=1,0.0011,0.026,1 PL:DP:SP:GT:GQ 30,0,189:9:0:0/1:33 +chr11 108225629 . T G 9.31 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=42 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr11 108225661 . A G 99 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,6;MQ=46;PV4=1,0.0001,0.00011,1 PL:DP:SP:GT:GQ 139,0,151:11:0:0/1:99 +chr11 108253737 . A T 4.13 . DP=20;AF1=0.4998;CI95=0.5,0.5;DP4=5,0,4,1;MQ=47;PV4=1,0.27,0.27,0.024 PL:DP:SP:GT:GQ 32,0,59:10:0:0/1:35 +chr11 108275971 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 108276091 . C G 67 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=5,0,6,0;MQ=47;PV4=1,3.1e-05,0.084,1 PL:DP:SP:GT:GQ 97,0,148:11:0:0/1:99 +chr11 108303718 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 108312830 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 108345515 . G GA 99 . INDEL;DP=36;AF1=0.5;CI95=0.5,0.5;DP4=22,2,9,2;MQ=50;PV4=0.57,1,1,1 PL:DP:SP:GT:GQ 188,0,209:35:2:0/1:99 +chr11 108352160 . C T 63.3 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,5;MQ=47 PL:DP:SP:GT:GQ 96,15,0:5:0:1/1:75 +chr11 108361385 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 108380335 . T C 87 . DP=52;AF1=1;CI95=1,1;DP4=1,1,1,25;MQ=49;PV4=0.14,0.47,0.061,1 PL:DP:SP:GT:GQ 120,40,0:28:9:1/1:99 +chr11 108384207 . C T 8.64 . DP=43;AF1=0.5;CI95=0.5,0.5;DP4=6,15,1,6;MQ=49;PV4=0.64,0.00039,1.9e-07,1 PL:DP:SP:GT:GQ 38,0,255:28:2:0/1:41 +chr11 108384712 . CAAA CACCGCTGAAA 5.08 . INDEL;DP=13;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.13 PL:DP:SP:GT:GQ 41,0,39:3:0:0/1:40 +chr11 108409784 . T A 96 . DP=47;AF1=0.5;CI95=0.5,0.5;DP4=8,18,6,13;MQ=50;PV4=1,1.5e-24,0.029,0.17 PL:DP:SP:GT:GQ 126,0,255:45:0:0/1:99 +chr11 108412574 . T A 4.13 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=50;PV4=1,0.38,1,0.085 PL:DP:SP:GT:GQ 32,0,32:6:0:0/1:32 +chr11 108420487 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 108429510 . GTTT GTTTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 108483800 . T A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 108512302 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 108523188 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 108547920 . A G 4.77 . DP=30;AF1=0.4999;CI95=0.5,0.5;DP4=11,3,6,0;MQ=49;PV4=0.52,0.021,0.18,1 PL:DP:SP:GT:GQ 33,0,205:20:3:0/1:36 +chr11 108548002 . T A 56 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=0,9,0,9;MQ=48;PV4=1,0.062,0.00044,0.27 PL:DP:SP:GT:GQ 86,0,138:18:0:0/1:89 +chr11 108557283 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 108560262 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 108578172 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 108586283 . A ACATT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 108594656 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 108645966 . GAA GAAGTGAGGGAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 108653137 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 108664535 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 108685527 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 108696328 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 108707279 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 108711918 . T G 5.46 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=42;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,37:2:0:0/1:35 +chr11 108711979 . A G 24.1 . DP=7;AF1=0.505;CI95=0.5,0.5;DP4=1,0,4,0;MQ=49;PV4=1,0.041,0.25,1 PL:DP:SP:GT:GQ 54,0,17:5:0:0/1:20 +chr11 108722851 . C G 10.2 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr11 108744092 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 108755547 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 108756638 . T TTG 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 108761767 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 108801924 . C CTA 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 108805299 . t tTCTTTGG 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 108814451 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 108855677 . A T 3.06 . DP=2;AF1=0.5099;CI95=0.5,0.5;DP4=0,1,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,14:2:0:0/1:17 +chr11 108860957 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 108935532 . t tTG 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 108948519 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 108980689 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 109043843 . A ATAGAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 109065707 . t tCACCTGAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 109107720 . AT ATTGTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 109123217 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 109125541 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 109284906 . G GTCCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 109304792 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 109312119 . AA AATTTATTTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 109338204 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 109376245 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 109390091 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 109401890 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 109437486 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 109482609 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 109493817 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 109518935 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 109521678 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 109557461 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 109563050 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 109573463 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 109575261 . T A 3.6 . DP=2;AF1=0.5127;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,13:2:0:0/1:16 +chr11 109579145 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 109601277 . TAGAA TAGAAGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 109622357 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 109640514 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 109685097 . G T 4.77 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,44:2:0:0/1:36 +chr11 109685395 . a aTCTCTTCTCAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 109687628 . A ACG 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 109688240 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 109710644 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 109732677 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 109758738 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 109780897 . t tGTCTTACAACAC 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 109823354 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 109835529 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 109836387 . a aGCCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 109901290 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 109916770 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 109920383 . C T 13.9 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=48 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr11 109920437 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 109927798 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 109956056 . C CCGGGGCTCTAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 109994735 . T G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 110036057 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 110048881 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 110058326 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 110106746 . C T 33.1 . DP=8;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=50 PL:DP:SP:GT:GQ 66,21,0:7:0:1/1:84 +chr11 110108215 . A T 3.02 . DP=6;AF1=0.5004;CI95=0.5,0.5;DP4=2,0,2,0;MQ=49;PV4=1,1,0,1 PL:DP:SP:GT:GQ 30,0,26:4:0:0/1:28 +chr11 110128570 . T TTGTGG 7.38 . INDEL;DP=4;AF1=0.504;CI95=0.5,0.5;DP4=1,0,0,1;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,18:2:0:0/1:21 +chr11 110131076 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 110134704 . C G 4.18 . DP=14;AF1=0.51;CI95=0.5,0.5;DP4=1,0,2,0;MQ=48;PV4=1,0.33,0.33,0.32 PL:DP:SP:GT:GQ 32,0,14:3:0:0/1:17 +chr11 110138427 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 110179510 . C CAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 110201647 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 110230515 . t tCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 110236202 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 110236782 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 110305087 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 110332826 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 110333030 . AATATATATA AATATATATATA 76.5 . INDEL;DP=18;AF1=0.5;CI95=0.5,0.5;DP4=9,0,5,0;MQ=50;PV4=1,0.42,0.095,0.033 PL:DP:SP:GT:GQ 114,0,180:14:0:0/1:99 +chr11 110346100 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 110351251 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 110353593 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 110361302 . c cCGTGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 110380705 . G GCGCTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 110390706 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 110394319 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 110413638 . g gATGTCTCTA 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 110438376 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 110453009 . G A 34 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=45 PL:DP:SP:GT:GQ 66,9,0:3:0:1/1:63 +chr11 110453845 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 110492712 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 110500329 . CTTAT C 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 110504927 . G GCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 110506408 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 110515705 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 110516821 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 110587543 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 110587851 . G C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 110643124 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 110646246 . cagt c 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 110647016 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 110659577 . A T 25.5 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=16 PL:DP:SP:GT:GQ 58,12,0:4:0:1/1:72 +chr11 110664120 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 110675387 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 110678322 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 110699999 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 110723786 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 110734480 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 110756036 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 110768869 . ATTT A 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 110781665 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 110789951 . G GTA 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 110974293 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 110976504 . TG TGGCG 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,0.26 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr11 111007101 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 111018128 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 111024450 . G GGA 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 111036163 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 111044287 . T TTCTAAGCGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 111078884 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 111100220 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 111145399 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 111152211 . A G 4.77 . DP=14;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,2;MQ=49;PV4=1,0.27,0.053,1 PL:DP:SP:GT:GQ 33,0,49:4:0:0/1:36 +chr11 111156176 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 111168437 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 111180977 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 111181530 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 111221601 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 111225273 . CC CCTAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 111234041 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 111245071 . G GCGCGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 111253530 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 111265582 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 111270439 . T TAA 6.56 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 111270574 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 111293790 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 111293795 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 111295847 . T C 4.61 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=50 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 111314465 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 111314997 . g gTCTAACTCT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 111316610 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 111338478 . T C 5.48 . DP=8;AF1=0.5024;CI95=0.5,0.5;DP4=0,1,0,2;MQ=49;PV4=1,0.05,0,1 PL:DP:SP:GT:GQ 34,0,20:3:0:0/1:23 +chr11 111339478 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 111360612 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 111374294 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 111383033 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 111384182 . T C 5.46 . DP=10;AF1=0.4999;CI95=0.5,0.5;DP4=3,3,3,0;MQ=49;PV4=0.46,0.14,0.13,1 PL:DP:SP:GT:GQ 34,0,160:9:3:0/1:37 +chr11 111420364 . A G 99 . DP=52;AF1=1;CI95=1,1;DP4=1,0,16,30;MQ=44;PV4=0.36,1,0.00041,1 PL:DP:SP:GT:GQ 255,121,0:47:0:1/1:99 +chr11 111428425 . G GGA 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.33 PL:DP:SP:GT:GQ 41,0,80:3:0:0/1:44 +chr11 111487106 . C G,A 99 . DP=29;AF1=1;CI95=1,1;DP4=0,0,3,21;MQ=48 PL:DP:SP:GT:GQ 207,69,204,0,53,204:24:0:1/1:99 +chr11 111495760 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 111508741 . G T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 111523098 . A ACAGTAT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 111556547 . T A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 111573684 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 111591199 . A G 22 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=3,1,4,0;MQ=48;PV4=1,0.25,0.013,1 PL:DP:SP:GT:GQ 52,0,79:8:0:0/1:55 +chr11 111600236 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 111609094 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 111645561 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 111651778 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 111665622 . T TCTCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 111715232 . A C 13.2 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=3,0,4,0;MQ=48;PV4=1,0.41,0.017,1 PL:DP:SP:GT:GQ 43,0,44:7:0:0/1:43 +chr11 111724133 . C T 49 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=5,4,7,2;MQ=49;PV4=0.62,2.3e-06,0.016,1 PL:DP:SP:GT:GQ 79,0,255:18:2:0/1:82 +chr11 111724320 . A C 4.77 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=3,0,3,0;MQ=50;PV4=1,1,0.19,1 PL:DP:SP:GT:GQ 33,0,33:6:0:0/1:33 +chr11 111729048 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 111754591 . A G 4.13 . DP=17;AF1=0.4998;CI95=0.5,0.5;DP4=0,2,0,4;MQ=49;PV4=1,0.059,0.22,1 PL:DP:SP:GT:GQ 32,0,51:6:0:0/1:35 +chr11 111779473 . T C 17.1 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=4,1,5,0;MQ=49;PV4=1,0.0014,0.24,1 PL:DP:SP:GT:GQ 47,0,143:10:0:0/1:50 +chr11 111784388 . C A 21 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=2,3,0,4;MQ=49;PV4=0.44,0.16,0.016,0.4 PL:DP:SP:GT:GQ 51,0,117:9:4:0/1:54 +chr11 111795085 . C G 22 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=2,8,0,5;MQ=48;PV4=0.52,0.0067,0.48,1 PL:DP:SP:GT:GQ 52,0,228:15:3:0/1:55 +chr11 111815817 . a aCTCGACGGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 111827990 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 111829957 . G C 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 111832138 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 111845043 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 111894756 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 111907927 . AAC AACAC 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.17 PL:DP:SP:GT:GQ 41,0,75:3:0:0/1:44 +chr11 111908162 . T C 99 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=7,11,3,14;MQ=49;PV4=0.26,2.7e-10,0.017,1 PL:DP:SP:GT:GQ 148,0,255:35:6:0/1:99 +chr11 111916000 . TA T 5.09 . INDEL;DP=16;AF1=0.5016;CI95=0.5,0.5;DP4=0,1,0,2;MQ=50;PV4=1,0.13,1,1 PL:DP:SP:GT:GQ 41,0,22:3:0:0/1:25 +chr11 111916001 . AGG AG 99 . INDEL;DP=13;AF1=1;CI95=1,1;DP4=0,0,0,12;MQ=50 PL:DP:SP:GT:GQ 154,36,0:12:0:1/1:99 +chr11 111920681 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 111933088 . A G 22 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=4,0,2,0;MQ=48;PV4=1,2.1e-06,0,1 PL:DP:SP:GT:GQ 52,0,138:6:0:0/1:55 +chr11 111955257 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 111959541 . A C 6.99 . DP=8;AF1=0.5012;CI95=0.5,0.5;DP4=2,0,2,0;MQ=47;PV4=1,1,0.025,1 PL:DP:SP:GT:GQ 36,0,23:4:0:0/1:26 +chr11 111959715 . C T,A 49.3 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,1,5;MQ=49 PL:DP:SP:GT:GQ 84,17,74,2,0,74:6:0:1/1:75 +chr11 111973529 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 111982916 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 111992698 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 112017444 . T TCGAAGTAGG 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 112017552 . c cCCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 112033576 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 112033586 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 112038920 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 112041128 . TTTTGTCCTGTT TTT 99 . INDEL;DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=50 PL:DP:SP:GT:GQ 153,12,0:4:0:1/1:72 +chr11 112050950 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 112064431 . T C 37 . DP=8;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=47;PV4=1,1,0,1 PL:DP:SP:GT:GQ 67,0,58:4:0:0/1:60 +chr11 112065367 . A C 38.8 . DP=15;AF1=0.95;CI95=0.5,1;DP4=1,0,5,0;MQ=48;PV4=1,1,0.18,1 PL:DP:SP:GT:GQ 67,0,0:6:0:1/1:10 +chr11 112065483 . A C 69.5 . DP=35;AF1=1;CI95=0.5,1;DP4=1,0,1,8;MQ=49;PV4=0.2,1,0.23,1 PL:DP:SP:GT:GQ 102,12,0:10:0:1/1:72 +chr11 112072930 . G A 88.5 . DP=15;AF1=1;CI95=0.5,1;DP4=1,0,3,7;MQ=49;PV4=0.36,0.0045,0.012,1 PL:DP:SP:GT:GQ 119,4,0:11:0:1/1:45 +chr11 112081297 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 112087101 . T A 75 . DP=11;AF1=1;CI95=1,1;DP4=0,0,0,11;MQ=48 PL:DP:SP:GT:GQ 108,33,0:11:0:1/1:99 +chr11 112088499 . A C 74 . DP=9;AF1=1;CI95=1,1;DP4=0,0,7,1;MQ=49 PL:DP:SP:GT:GQ 107,24,0:8:0:1/1:96 +chr11 112098494 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 112099410 . T C 24 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,5;MQ=49;PV4=1,5.5e-06,0.054,1 PL:DP:SP:GT:GQ 54,0,169:11:0:0/1:57 +chr11 112132155 . gt gTAACt 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 112138161 . C T 35 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=37 PL:DP:SP:GT:GQ 67,9,0:3:0:1/1:63 +chr11 112145996 . A AGCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 112164118 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 112172959 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 112183909 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 112185291 . t tCANNNNN 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 112205656 . GAG GAGTAG 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 112240591 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 112270344 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 112303990 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 112317008 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 112318374 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 112319876 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 112336085 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 112336956 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 112348758 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 112409551 . T A 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 112415250 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 112435112 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 112458232 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 112462610 . TG TGGGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 112465898 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 112477498 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 112488587 . C CTAGTATT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 112501801 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 112515201 . G A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 112533739 . A ACAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 112588749 . T A 8.65 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 112589937 . GAC GACCAC 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 112594906 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 112600123 . C T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 112621739 . A C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 112656753 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 112656772 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 112677905 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 112679923 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 112683851 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 112695651 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 112701080 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 112709321 . T TAA 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 112720136 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 112727502 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 112807581 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 112811211 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 112899533 . T TGGTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 112904645 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 112912548 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 112933972 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 112944708 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 112967619 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 113000808 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 113001063 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 113017608 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 113020011 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 113027525 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 113054194 . A C 14.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 113103165 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 113115707 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 113170073 . C A 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 113200558 . A G 99 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=8,0,9,0;MQ=47;PV4=1,0.00017,5e-06,1 PL:DP:SP:GT:GQ 160,0,189:17:0:0/1:99 +chr11 113220914 . C G 6.98 . DP=14;AF1=0.5003;CI95=0.5,0.5;DP4=0,2,0,3;MQ=49;PV4=1,0.14,1,1 PL:DP:SP:GT:GQ 36,0,28:5:0:0/1:30 +chr11 113226161 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 113229032 . ggagt g 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 113230869 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 113234466 . G A 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 113235864 . A G 17.1 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=48;PV4=1,0.17,0.16,0.32 PL:DP:SP:GT:GQ 47,0,70:4:0:0/1:50 +chr11 113236144 . ttct tTCTAGtct 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 113236210 . A AACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 113237717 . A G 5.51 . DP=2;AF1=0.5079;CI95=0.5,0.5;DP4=0,1,0,1;MQ=32;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,15:2:0:0/1:18 +chr11 113251337 . ag aGGGTCg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 113252675 . T TCA 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 113254930 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 113263633 . G C,A 20.8 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=45 PL:DP:SP:GT:GQ 61,15,51,9,0,51:3:0:1/1:49 +chr11 113279116 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 113281397 . C T 9.31 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr11 113283477 . A G 81 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=1,11,1,8;MQ=49;PV4=1,1.2e-06,3.7e-07,1 PL:DP:SP:GT:GQ 111,0,249:21:0:0/1:99 +chr11 113294369 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 113314678 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 113343638 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 113364392 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 113366583 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 113367868 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 113388075 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 113404661 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 113416299 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 113421183 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 113476808 . t tAAACGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 113570044 . T C 3.98 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 33,6,0:2:0:1/1:49 +chr11 113604425 . T G 14.2 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=4,0,0,4;MQ=49;PV4=0.029,0.00021,0.057,0.017 PL:DP:SP:GT:GQ 44,0,112:8:15:0/1:47 +chr11 113618968 . G C 56.5 . DP=37;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=47 PL:DP:SP:GT:GQ 89,12,0:4:0:1/1:72 +chr11 113668418 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 113670052 . T A 86.1 . DP=65;AF1=1;CI95=0.5,1;DP4=0,1,11,2;MQ=49;PV4=0.21,0.24,0.23,1 PL:DP:SP:GT:GQ 119,18,0:14:0:1/1:90 +chr11 113674619 . A G 3.01 . DP=5;AF1=0.4998;CI95=0.5,0.5;DP4=0,3,0,2;MQ=48;PV4=1,1,0.037,0.41 PL:DP:SP:GT:GQ 30,0,42:5:0:0/1:33 +chr11 113679119 . C T 99 . DP=45;AF1=0.5;CI95=0.5,0.5;DP4=13,12,4,7;MQ=48;PV4=0.48,0.00013,9.5e-23,1 PL:DP:SP:GT:GQ 216,0,255:36:3:0/1:99 +chr11 113683249 . C A 41 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,8;MQ=49;PV4=1,0.18,0.1,1 PL:DP:SP:GT:GQ 71,0,74:13:0:0/1:72 +chr11 113685409 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 113698120 . T A 7.8 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,2;MQ=47;PV4=1,0,0.17,1 PL:DP:SP:GT:GQ 37,0,41:3:0:0/1:39 +chr11 113702278 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 113718517 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 113744378 . C G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 113750861 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 113775551 . GAGAAG GAG 23.5 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,0,2,0;MQ=50;PV4=1,0.25,1,0.38 PL:DP:SP:GT:GQ 61,0,41:3:0:0/1:44 +chr11 113791486 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 113792913 . G GAGGTCGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 113846229 . A T 3.55 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 113857249 . C A 22 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=8,4,7,0;MQ=49;PV4=0.25,0.09,0.42,0.21 PL:DP:SP:GT:GQ 52,0,177:19:6:0/1:55 +chr11 113865078 . ATGAC A 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 113893094 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 113906265 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 113915486 . C CCTGTACG 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 113961280 . TTGGAG T 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 113970346 . CTCAA C 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 113973095 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 113990464 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 113994357 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 113995112 . C G 13 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr11 114002008 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 114009805 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 114057792 . T G 58 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,9;MQ=48;PV4=1,0.14,0.056,1 PL:DP:SP:GT:GQ 88,0,76:14:0:0/1:79 +chr11 114068173 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 114076425 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 114079863 . C CCA 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 114091303 . g gATT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 114093725 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 114099751 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 114123099 . TG TGCGG 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 114140057 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 114156695 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 114163563 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 114167476 . T C 4.77 . DP=40;AF1=0.4999;CI95=0.5,0.5;DP4=2,24,1,6;MQ=50;PV4=0.52,8.8e-12,2.6e-05,1 PL:DP:SP:GT:GQ 33,0,255:33:3:0/1:36 +chr11 114188768 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 114255093 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 114270427 . C CCA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 114272574 . T A 26 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=3,6,0,6;MQ=49;PV4=0.23,0.028,0.0015,0.29 PL:DP:SP:GT:GQ 56,0,207:15:6:0/1:59 +chr11 114273481 . A T 3.12 . DP=7;AF1=0.5261;CI95=0.5,0.5;DP4=1,0,2,0;MQ=49;PV4=1,1,0,1 PL:DP:SP:GT:GQ 30,0,10:3:0:0/1:13 +chr11 114275651 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 114278195 . A G 8.64 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,2,0;MQ=48;PV4=0.33,0.018,0.092,1 PL:DP:SP:GT:GQ 38,0,76:4:5:0/1:41 +chr11 114308387 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 114324026 . A G 51 . DP=10;AF1=0.5;CI95=0.5,0.5;DP4=7,0,3,0;MQ=48;PV4=1,0.31,0,1 PL:DP:SP:GT:GQ 81,0,169:10:0:0/1:84 +chr11 114324444 . G A 25 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,3,3,4;MQ=49;PV4=0.47,1.9e-05,0.24,0.22 PL:DP:SP:GT:GQ 55,0,91:10:3:0/1:58 +chr11 114329600 . C CAA 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,42:2:0:0/1:43 +chr11 114330018 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 114381276 . a aCCTCTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 114388432 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 114388640 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 114409844 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 114422352 . G A 47 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=46 PL:DP:SP:GT:GQ 79,9,0:3:0:1/1:63 +chr11 114430047 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 114437308 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 114437889 . A G 7.8 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,44:2:0:0/1:39 +chr11 114442103 . A G 99 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=4,7,5,11;MQ=47;PV4=1,2.2e-05,6.3e-06,0.24 PL:DP:SP:GT:GQ 213,0,255:27:0:0/1:99 +chr11 114442163 . T C 4.77 . DP=18;AF1=0.4999;CI95=0.5,0.5;DP4=4,3,0,5;MQ=49;PV4=0.081,0.0023,0.0033,0.45 PL:DP:SP:GT:GQ 33,0,217:12:11:0/1:36 +chr11 114448391 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 114454201 . T TAA 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=48;PV4=1,1,1,0.044 PL:DP:SP:GT:GQ 38,0,90:4:0:0/1:41 +chr11 114477961 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 114484751 . G T 8.44 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=47 PL:DP:SP:GT:GQ 39,6,0:2:0:1/1:49 +chr11 114493587 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 114546631 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 114596492 . G T 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 114622587 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 114626449 . T A 3.55 . DP=2;AF1=0.5023;CI95=0.5,0.5;DP4=1,0,1,0;MQ=32;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,20:2:0:0/1:23 +chr11 114634293 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 114635840 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 114650823 . G A 4.77 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 33,0,44:2:0:0/1:36 +chr11 114662430 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 114674900 . A AGAGCG 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 114686915 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 114692185 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 114696363 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 114697929 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 114727142 . A C 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 114729633 . ga gAGTCCa 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 114738145 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 114751760 . T TTCC 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 114757350 . G A 6.02 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr11 114757584 . ACC ACCC 29.2 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=50 PL:DP:SP:GT:GQ 68,6,0:2:0:1/1:49 +chr11 114773582 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 114777852 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 114783987 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 114835985 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 114836185 . C CACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 114849227 . T C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 114913345 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 114914035 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 114939437 . AGGG A 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 114952620 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 114963986 . CTT C 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 114983700 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 114984052 . A ACC 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 114988490 . C T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 114991158 . A T 13 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=41 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr11 115019355 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 115034801 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 115041146 . TTTTAT TT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 115047391 . A G 6.98 . DP=21;AF1=0.4999;CI95=0.5,0.5;DP4=0,9,0,6;MQ=47;PV4=1,0.0091,0.048,1 PL:DP:SP:GT:GQ 36,0,175:15:0:0/1:39 +chr11 115047402 . C G 36 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,4;MQ=46;PV4=1,0.2,0.012,1 PL:DP:SP:GT:GQ 66,0,49:6:0:0/1:52 +chr11 115049470 . C A 11.3 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=10,1,0,5;MQ=49;PV4=0.0014,0.0013,0.0024,0.43 PL:DP:SP:GT:GQ 41,0,223:16:29:0/1:44 +chr11 115056731 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 115067735 . G T 6.2 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 35,0,44:2:0:0/1:37 +chr11 115075214 . G A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 115120974 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 115137641 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 115150237 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 115154815 . tc tCAAACCAc 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 115157046 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 115158741 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 115165111 . A G 38 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=1,0,2,0;MQ=45;PV4=1,0.1,0,1 PL:DP:SP:GT:GQ 68,0,41:3:0:0/1:44 +chr11 115170367 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 115175528 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 115198496 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 115214884 . A AT 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 115236563 . TC TCTCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 115268254 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 115280741 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 115310973 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 115349206 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 115369481 . T C 5.46 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,34:2:0:0/1:34 +chr11 115379839 . c cCAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 115390204 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 115408921 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 115434137 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 115464218 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 115527912 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 115528332 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 115535881 . C A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 115569287 . CA CACAGTAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 115599471 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 115603615 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 115615635 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 115623293 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 115634722 . CG CGCTAAAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 115642598 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 115653842 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 115661207 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 115663484 . G C 3.54 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,44:2:0:0/1:34 +chr11 115676866 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 115682079 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 115683175 . A T 5.46 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,40:2:0:0/1:36 +chr11 115696146 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 115743982 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 115760110 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 115762046 . C CTGACTAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 115762392 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 115770747 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 115780729 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 115782643 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 115791530 . c cTATTCTAGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 115806753 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 115812370 . A T 4.77 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 115818998 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 115831696 . GCCTC GC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 115846067 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 115867595 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 115869754 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 115912946 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 115926904 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 115931546 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 115933316 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 115935091 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 115935152 . G GTATCTCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 115953319 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 115958855 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 115981598 . C CGGCCGCCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 115995437 . A AAACGCTC 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 115998349 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 116008511 . c cTAGTGCTGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 116010222 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 116010428 . CA CAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 116019442 . tat tATCTCAAGat 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 116026381 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 116033767 . G A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 116039963 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 116046483 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 116076130 . GGGGTAT G 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 116081154 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 116082439 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 116088567 . T TACG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 116089011 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 116118444 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 116118475 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 116118887 . CAG CAGTAG 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 116129069 . GAGA GAGAAAAAAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 116131418 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 116133785 . A G 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 116143420 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 116157818 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 116176003 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 116178137 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 116187302 . ag aGTGGg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 116191184 . aaaataaataaa aaaataaa 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 116203915 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 116204110 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 116214322 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 116247411 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 116290134 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 116298449 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 116343833 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 116369374 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 116372646 . g gCA 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 116381936 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 116389205 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 116389603 . CA CACCTTGAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 116409853 . c cGCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 116414651 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 116477988 . C CTG 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 116481498 . A G 3.54 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,44:2:0:0/1:34 +chr11 116500980 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 116511894 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 116513816 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 116514848 . g gTTCCC 12.7 . INDEL;DP=5;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 116537425 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 116546102 . ac aCc 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 116549915 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 116558229 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 116585240 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 116625177 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 116630935 . T A 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 116633729 . C T 3.01 . DP=35;AF1=0.4997;CI95=0.5,0.5;DP4=9,9,0,6;MQ=49;PV4=0.052,0.014,0.028,1 PL:DP:SP:GT:GQ 30,0,255:24:13:0/1:33 +chr11 116653367 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 116655747 . G C 11.3 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=2,4,3,0;MQ=47;PV4=0.17,0.068,0.023,1 PL:DP:SP:GT:GQ 41,0,169:9:8:0/1:44 +chr11 116661138 . C T 9.31 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 40,6,0:2:0:1/1:49 +chr11 116662311 . C A 4.13 . DP=7;AF1=0.4998;CI95=0.5,0.5;DP4=3,0,2,0;MQ=48;PV4=1,0.15,0.11,1 PL:DP:SP:GT:GQ 32,0,90:5:0:0/1:35 +chr11 116686033 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 116693354 . G A 43 . DP=60;AF1=0.5;CI95=0.5,0.5;DP4=21,11,13,7;MQ=50;PV4=1,1.8e-17,1,1 PL:DP:SP:GT:GQ 73,0,255:52:0:0/1:76 +chr11 116693463 . C T 4.13 . DP=56;AF1=0.4998;CI95=0.5,0.5;DP4=4,7,0,4;MQ=49;PV4=0.52,1,0.3,0.49 PL:DP:SP:GT:GQ 32,0,131:15:3:0/1:35 +chr11 116693464 . C T 99 . DP=57;AF1=1;CI95=1,1;DP4=0,0,4,10;MQ=48 PL:DP:SP:GT:GQ 177,42,0:14:0:1/1:99 +chr11 116702774 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 116703640 . G C 62.1 . DP=31;AF1=1;CI95=0.5,1;DP4=0,0,1,5;MQ=48 PL:DP:SP:GT:GQ 95,18,0:6:0:1/1:90 +chr11 116706858 . TTCT TTCTCT 6.55 . INDEL;DP=5;AF1=0.5005;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 43,0,27:2:0:0/1:30 +chr11 116707684 . A G 99 . DP=19;AF1=1;CI95=1,1;DP4=0,0,15,0;MQ=44 PL:DP:SP:GT:GQ 218,45,0:15:0:1/1:99 +chr11 116715272 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 116716955 . C T 7.8 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,35:2:0:0/1:36 +chr11 116729176 . GGAGA GGA 9.93 . INDEL;DP=25;AF1=0.5;CI95=0.5,0.5;DP4=2,12,3,0;MQ=50;PV4=0.015,0.23,1,0.098 PL:DP:SP:GT:GQ 47,0,245:17:18:0/1:50 +chr11 116729179 . G C 6.98 . DP=27;AF1=0.4999;CI95=0.5,0.5;DP4=1,10,5,0;MQ=48;PV4=0.0014,0.034,0.0017,1 PL:DP:SP:GT:GQ 36,0,222:16:29:0/1:39 +chr11 116739242 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 116740970 . GG GGTGGAG 3.25 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr11 116744389 . T C 99 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=0,5,1,6;MQ=47;PV4=1,0.3,0.00029,1 PL:DP:SP:GT:GQ 153,0,119:12:0:0/1:99 +chr11 116753260 . G C 8.65 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 116781856 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 116791168 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 116824884 . T G 58 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,5;MQ=48;PV4=1,7.4e-05,0.02,1 PL:DP:SP:GT:GQ 88,0,154:10:0:0/1:91 +chr11 116831194 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 116836718 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 116849134 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 116849284 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 116852728 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 116891647 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 116891655 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 116911858 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 116916674 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 116923625 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 116950176 . G T 4.11 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 34,9,0:3:0:1/1:63 +chr11 116962127 . a aCAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 116983731 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 116983740 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 117007238 . T TGTA 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=2,1,1,0;MQ=49;PV4=1,1,1,0.00094 PL:DP:SP:GT:GQ 38,0,103:4:0:0/1:41 +chr11 117010440 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 117032092 . TC TCTCGATGCC 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 117052068 . AGTCTC A 23.5 . INDEL;DP=17;AF1=0.5;CI95=0.5,0.5;DP4=6,1,9,0;MQ=50;PV4=0.44,7.9e-07,1,1 PL:DP:SP:GT:GQ 61,0,202:16:0:0/1:64 +chr11 117052069 . GTCTCT G 99 . INDEL;DP=13;AF1=0.5;CI95=0.5,0.5;DP4=5,1,6,0;MQ=50;PV4=1,0.0022,0.17,1 PL:DP:SP:GT:GQ 156,0,197:12:0:0/1:99 +chr11 117059347 . C T 68 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=6,0,8,0;MQ=49;PV4=1,0.0024,0.037,1 PL:DP:SP:GT:GQ 98,0,145:14:0:0/1:99 +chr11 117059552 . G A 99 . DP=53;AF1=0.5;CI95=0.5,0.5;DP4=2,29,2,11;MQ=48;PV4=0.57,4.6e-07,6.5e-21,1 PL:DP:SP:GT:GQ 167,0,255:44:2:0/1:99 +chr11 117063995 . C T 18.1 . DP=8;AF1=0.5004;CI95=0.5,0.5;DP4=0,2,0,3;MQ=49;PV4=1,1,0.066,1 PL:DP:SP:GT:GQ 48,0,28:5:0:0/1:31 +chr11 117066189 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 117066531 . A T 4.61 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 117066828 . T C,G 5.93 . DP=23;AF1=0.5938;CI95=0.5,1;DP4=0,1,0,5;MQ=46;PV4=1,1,0.29,1 PL:DP:SP:GT:GQ 48,14,28,19,0,40:6:0:0/1:7 +chr11 117072952 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 117075040 . A T 3.01 . DP=24;AF1=0.4997;CI95=0.5,0.5;DP4=6,7,0,4;MQ=49;PV4=0.24,0.18,0.023,0.17 PL:DP:SP:GT:GQ 30,0,234:17:6:0/1:33 +chr11 117077817 . C T 20 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=1,3,0,3;MQ=48;PV4=1,1,0.085,1 PL:DP:SP:GT:GQ 50,0,82:7:0:0/1:53 +chr11 117095089 . T TTG 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 117096628 . A C 7.8 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=7,1,3,0;MQ=49;PV4=1,0.21,0.00056,0.27 PL:DP:SP:GT:GQ 37,0,145:11:0:0/1:40 +chr11 117100594 . A G 9.52 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,4;MQ=50;PV4=1,0.032,0.27,1 PL:DP:SP:GT:GQ 39,0,56:6:0:0/1:42 +chr11 117109270 . G T 14.7 . DP=18;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=50 PL:DP:SP:GT:GQ 47,12,0:4:0:1/1:72 +chr11 117109614 . T G 8.64 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=1,19,7,0;MQ=49;PV4=9e-06,1.5e-05,0.00018,1 PL:DP:SP:GT:GQ 38,0,251:27:50:0/1:41 +chr11 117123916 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 117152673 . A C 6.2 . DP=35;AF1=0.4999;CI95=0.5,0.5;DP4=2,8,4,0;MQ=48;PV4=0.015,0.034,0.053,1 PL:DP:SP:GT:GQ 35,0,199:14:18:0/1:38 +chr11 117154487 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 117160347 . A G 99 . DP=40;AF1=1;CI95=1,1;DP4=0,1,20,12;MQ=48;PV4=0.39,1,1,1 PL:DP:SP:GT:GQ 255,76,0:33:0:1/1:99 +chr11 117163765 . C A 99 . DP=49;AF1=1;CI95=1,1;DP4=1,0,22,15;MQ=49;PV4=1,1,0.13,1 PL:DP:SP:GT:GQ 220,98,0:38:0:1/1:99 +chr11 117163824 . C G 99 . DP=43;AF1=0.5;CI95=0.5,0.5;DP4=6,15,7,8;MQ=48;PV4=0.31,7.1e-05,2.4e-14,0.34 PL:DP:SP:GT:GQ 230,0,255:36:5:0/1:99 +chr11 117175461 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 117177948 . G GAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 117182939 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 117183789 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117206329 . A AGGAGGAGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 117208765 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 117209253 . CTCTT CTCTTCTT 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,108:4:0:0/1:41 +chr11 117224483 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 117251269 . G GAGTCTGAA 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 117253313 . GGC GGCGC 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 117256647 . AA AAAGATCCGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 117261206 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 117265246 . C A,T 4.99 . DP=6;AF1=0.5429;CI95=0.5,1;DP4=0,1,0,3;MQ=48;PV4=1,1,0.029,0.069 PL:DP:SP:GT:GQ 41,8,24,16,0,36:4:0:0/1:11 +chr11 117265871 . GCT G 13.7 . INDEL;DP=11;AF1=0.5;CI95=0.5,0.5;DP4=3,0,0,2;MQ=50;PV4=0.1,0.23,1,0.37 PL:DP:SP:GT:GQ 51,0,96:5:10:0/1:54 +chr11 117270959 . a aGTAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 117279821 . TCTTCC TC 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,77:4:0:0/1:41 +chr11 117282800 . G T 6.98 . DP=46;AF1=0.4999;CI95=0.5,0.5;DP4=18,5,4,2;MQ=50;PV4=0.61,3.1e-09,2.5e-08,1 PL:DP:SP:GT:GQ 36,0,255:29:2:0/1:39 +chr11 117294743 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 117296481 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 117301679 . A G 36 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=6,1,5,0;MQ=47;PV4=1,1,0.00055,1 PL:DP:SP:GT:GQ 66,0,92:12:0:0/1:69 +chr11 117301818 . C T 14.2 . DP=10;AF1=0.5016;CI95=0.5,0.5;DP4=0,1,0,3;MQ=49;PV4=1,0.036,0.26,1 PL:DP:SP:GT:GQ 44,0,22:4:0:0/1:25 +chr11 117304196 . C G 21 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=5,7,0,5;MQ=49;PV4=0.24,0.068,0.019,1 PL:DP:SP:GT:GQ 51,0,244:17:6:0/1:54 +chr11 117309989 . C T 17.1 . DP=39;AF1=0.9999;CI95=0.5,1;DP4=0,1,6,0;MQ=49;PV4=0.14,0.3,0.31,1 PL:DP:SP:GT:GQ 47,3,0:7:0:1/1:41 +chr11 117310022 . A G 42.1 . DP=51;AF1=1;CI95=0.5,1;DP4=1,0,1,7;MQ=50;PV4=0.22,0.15,0.32,1 PL:DP:SP:GT:GQ 73,5,0:9:0:1/1:46 +chr11 117331958 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117332352 . A G 99 . DP=9;AF1=1;CI95=1,1;DP4=0,0,1,8;MQ=47 PL:DP:SP:GT:GQ 135,27,0:9:0:1/1:99 +chr11 117332875 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 117335722 . T C 99 . DP=45;AF1=1;CI95=1,1;DP4=0,0,7,4;MQ=49 PL:DP:SP:GT:GQ 132,33,0:11:0:1/1:99 +chr11 117336865 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 117342462 . T C 99 . DP=9;AF1=1;CI95=1,1;DP4=0,0,8,0;MQ=47 PL:DP:SP:GT:GQ 135,24,0:8:0:1/1:96 +chr11 117375596 . G A 99 . DP=18;AF1=0.5;CI95=0.5,0.5;DP4=8,0,7,2;MQ=46;PV4=0.47,1,2.2e-19,1 PL:DP:SP:GT:GQ 213,0,171:17:3:0/1:99 +chr11 117384562 . C G 5.46 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,44:2:0:0/1:37 +chr11 117389270 . C T 20 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=8,6,0,5;MQ=49;PV4=0.045,0.041,3.2e-09,1 PL:DP:SP:GT:GQ 50,0,255:19:14:0/1:53 +chr11 117391966 . G A 22 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,5,0,4;MQ=49;PV4=1,2.7e-05,0.12,1 PL:DP:SP:GT:GQ 52,0,203:10:0:0/1:55 +chr11 117394845 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117395495 . TGCAG TG 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,0.3 PL:DP:SP:GT:GQ 41,0,60:3:0:0/1:44 +chr11 117403175 . C A 3.54 . DP=49;AF1=0.4998;CI95=0.5,0.5;DP4=15,15,0,9;MQ=49;PV4=0.0069,1.3e-05,7.7e-08,1 PL:DP:SP:GT:GQ 31,0,255:39:22:0/1:34 +chr11 117406497 . T G 3.01 . DP=2;AF1=0.4998;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,44:2:0:0/1:33 +chr11 117416460 . T C 7.8 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,44:2:0:0/1:39 +chr11 117421858 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 117428785 . ATC ATCTCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 117433170 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 117455292 . TC TCGGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 117478212 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117482762 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 117492602 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 117495858 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 117518527 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 117550882 . GC GCCTATATGCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 117556127 . C T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 117557919 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117558855 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 117558862 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 117562889 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 117590479 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117610664 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 117620868 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117622598 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117623968 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 117634920 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117642971 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 117643195 . TGCAGGC TGC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 117645140 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117670573 . a aCTAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 117699557 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 117702900 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117708837 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 117719684 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117720448 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117726299 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117727178 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117729212 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 117735697 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 117773110 . G C 17.6 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=50 PL:DP:SP:GT:GQ 50,12,0:4:0:1/1:72 +chr11 117774291 . A C,T 33.5 . DP=12;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=49 PL:DP:SP:GT:GQ 70,16,61,4,0,61:5:0:1/1:72 +chr11 117777899 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 117782455 . A G 9.52 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,0,3,0;MQ=49;PV4=1,0.12,1,1 PL:DP:SP:GT:GQ 39,0,51:5:0:0/1:42 +chr11 117787703 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 117806127 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117815409 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 117838118 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 117841413 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 117842526 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 117844269 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 117846452 . G C 5.46 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,1;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,38:2:0:0/1:36 +chr11 117846909 . A ATCTCCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 117858983 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 117864846 . A G 92 . DP=27;AF1=0.5;CI95=0.5,0.5;DP4=0,12,0,12;MQ=47;PV4=1,3.9e-05,0.00042,1 PL:DP:SP:GT:GQ 122,0,212:24:0:0/1:99 +chr11 117869670 . A G 26.5 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=49 PL:DP:SP:GT:GQ 59,12,0:4:0:1/1:72 +chr11 117871165 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 117887180 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117954750 . ctcaaaaa c 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 117965595 . C T 19.2 . DP=20;AF1=0.5163;CI95=0.5,1;DP4=0,1,0,4;MQ=49;PV4=1,0.17,0.34,1 PL:DP:SP:GT:GQ 49,0,12:5:0:0/1:15 +chr11 117965646 . G A 3.01 . DP=8;AF1=0.4997;CI95=0.5,0.5;DP4=0,3,0,2;MQ=49;PV4=1,0.004,0.14,1 PL:DP:SP:GT:GQ 30,0,112:5:0:0/1:33 +chr11 117970784 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 117979744 . C A 69 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=43 PL:DP:SP:GT:GQ 101,9,0:3:0:1/1:63 +chr11 117982495 . T G 16.2 . DP=17;AF1=0.5064;CI95=0.5,0.5;DP4=0,1,3,1;MQ=49;PV4=0.4,0.051,0.34,1 PL:DP:SP:GT:GQ 46,0,16:5:0:0/1:19 +chr11 117984256 . T A 12.3 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,2;MQ=47;PV4=1,0.048,0.13,1 PL:DP:SP:GT:GQ 42,0,41:3:0:0/1:41 +chr11 117988082 . T C 52 . DP=52;AF1=0.5;CI95=0.5,0.5;DP4=8,13,13,1;MQ=49;PV4=0.0015,6.9e-07,0.0092,1 PL:DP:SP:GT:GQ 82,0,255:35:28:0/1:85 +chr11 117988387 . A G 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 118003752 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 118015832 . G A 4.77 . DP=17;AF1=0.4999;CI95=0.5,0.5;DP4=5,6,2,2;MQ=50;PV4=1,0.0021,0.017,1 PL:DP:SP:GT:GQ 33,0,255:15:0:0/1:36 +chr11 118018700 . GC GCTGACC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 118037564 . G A 10.2 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=48 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr11 118037813 . G T 99 . DP=17;AF1=1;CI95=1,1;DP4=0,0,1,12;MQ=45 PL:DP:SP:GT:GQ 234,39,0:13:0:1/1:99 +chr11 118039553 . T C 4.13 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=0,1,0,1;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,44:2:0:0/1:35 +chr11 118067426 . A G 27.5 . DP=13;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=49 PL:DP:SP:GT:GQ 60,12,0:4:0:1/1:72 +chr11 118069959 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 118071097 . T C 56.1 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,6,0;MQ=48 PL:DP:SP:GT:GQ 89,18,0:6:0:1/1:90 +chr11 118074337 . A G 99 . DP=52;AF1=1;CI95=1,1;DP4=0,1,14,25;MQ=46;PV4=1,0.13,0.41,0.15 PL:DP:SP:GT:GQ 255,83,0:40:0:1/1:99 +chr11 118081345 . A T 39 . DP=65;AF1=0.6671;CI95=0.5,1;DP4=1,0,3,4;MQ=49;PV4=1,0.22,0.31,1 PL:DP:SP:GT:GQ 68,0,3:8:0:0/1:5 +chr11 118083664 . A G 28.5 . DP=28;AF1=1;CI95=0.5,1;DP4=0,0,1,3;MQ=50 PL:DP:SP:GT:GQ 61,12,0:4:0:1/1:72 +chr11 118100501 . A G 3.54 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=3,0,1,0;MQ=48;PV4=1,0,0,1 PL:DP:SP:GT:GQ 31,0,114:4:0:0/1:34 +chr11 118101742 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 118103182 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 118104676 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 118107805 . A G 79 . DP=54;AF1=0.5003;CI95=0.5,0.5;DP4=0,2,2,11;MQ=49;PV4=1,0.0031,0.17,1 PL:DP:SP:GT:GQ 109,0,29:15:0:0/1:32 +chr11 118110977 . T C 37 . DP=59;AF1=0.502;CI95=0.5,0.5;DP4=1,1,1,5;MQ=49;PV4=0.46,0.18,0.22,1 PL:DP:SP:GT:GQ 67,0,21:8:3:0/1:24 +chr11 118131049 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 118134785 . T G 99 . DP=33;AF1=1;CI95=1,1;DP4=2,0,22,1;MQ=48;PV4=1,1,0.29,1 PL:DP:SP:GT:GQ 158,34,0:25:0:1/1:99 +chr11 118147284 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 118158330 . a aGGTTAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 118159045 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 118164538 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 118209960 . A C 5.56 . DP=26;AF1=0.5162;CI95=0.5,0.5;DP4=0,1,1,2;MQ=49;PV4=1,0.13,0.33,1 PL:DP:SP:GT:GQ 34,0,12:4:0:0/1:15 +chr11 118210106 . G C 69 . DP=16;AF1=1;CI95=1,1;DP4=1,0,13,0;MQ=49;PV4=1,1,1,1 PL:DP:SP:GT:GQ 102,28,0:14:0:1/1:99 +chr11 118215075 . Aggctggctggctggctggctg Aggctggctggctggctg 73.4 . INDEL;DP=3;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=50 PL:DP:SP:GT:GQ 113,9,0:3:0:1/1:63 +chr11 118216008 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 118221474 . G A 4.15 . DP=32;AF1=0.503;CI95=0.5,0.5;DP4=0,1,0,2;MQ=49;PV4=1,0.27,0.33,1 PL:DP:SP:GT:GQ 32,0,19:3:0:0/1:22 +chr11 118239266 . G A 14.4 . DP=19;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=50 PL:DP:SP:GT:GQ 47,15,0:5:0:1/1:75 +chr11 118240332 . T C 62.1 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=48 PL:DP:SP:GT:GQ 95,18,0:6:0:1/1:90 +chr11 118240367 . T TCTCTACACAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 118243921 . A T 3.54 . DP=20;AF1=0.4998;CI95=0.5,0.5;DP4=2,2,1,4;MQ=49;PV4=0.52,0.15,1,1 PL:DP:SP:GT:GQ 31,0,71:9:3:0/1:34 +chr11 118245592 . GT GTCT 3.25 . INDEL;DP=10;AF1=0.5;CI95=0.5,0.5;DP4=3,0,1,0;MQ=50;PV4=1,1,1,0.33 PL:DP:SP:GT:GQ 38,0,83:4:0:0/1:41 +chr11 118245971 . CTGTGTGTGTGTGTGTGTGT CTGTGTGTGTGTGTGTGTGTGTGT,CTGTGTGTGTGTGTGTGTGTGT 5.62 . INDEL;DP=7;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=24 PL:DP:SP:GT:GQ 50,13,41,7,0,38:3:0:1/1:49 +chr11 118257048 . GTTTT GTTTTT 7.15 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr11 118261053 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 118263398 . G T 41.5 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=39 PL:DP:SP:GT:GQ 74,12,0:4:0:1/1:72 +chr11 118263413 . A T 25 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=3,0,2,1;MQ=48;PV4=1,1,0.0031,0.34 PL:DP:SP:GT:GQ 55,0,46:6:0:0/1:48 +chr11 118271305 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 118305956 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 118332351 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 118339627 . C G 9.52 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=48;PV4=1,0.19,0.02,1 PL:DP:SP:GT:GQ 39,0,61:6:0:0/1:42 +chr11 118351035 . CTTTTTTTTTT CTTT 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 118351747 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 118392569 . T G 9.52 . DP=5;AF1=0.5005;CI95=0.5,0.5;DP4=2,0,3,0;MQ=48;PV4=1,1,0.14,0.31 PL:DP:SP:GT:GQ 39,0,27:5:0:0/1:30 +chr11 118392729 . A G 3.54 . DP=32;AF1=0.4998;CI95=0.5,0.5;DP4=7,8,4,1;MQ=48;PV4=0.32,0.063,1,1 PL:DP:SP:GT:GQ 31,0,232:20:5:0/1:34 +chr11 118405305 . G A 61.1 . DP=41;AF1=0.505;CI95=0.5,0.5;DP4=1,1,2,4;MQ=46;PV4=1,1,0.4,1 PL:DP:SP:GT:GQ 91,0,17:8:0:0/1:20 +chr11 118405343 . G A 99 . DP=13;AF1=1;CI95=1,1;DP4=0,0,1,8;MQ=42 PL:DP:SP:GT:GQ 198,27,0:9:0:1/1:99 +chr11 118405453 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 118422866 . AA AATA 14.6 . INDEL;DP=39;AF1=0.5;CI95=0.5,0.5;DP4=1,0,2,0;MQ=50;PV4=1,0.39,1,0.061 PL:DP:SP:GT:GQ 52,0,41:3:0:0/1:44 +chr11 118422868 . C T 65 . DP=38;AF1=1;CI95=1,1;DP4=1,0,30,0;MQ=49;PV4=1,1,0.11,1 PL:DP:SP:GT:GQ 98,73,0:31:0:1/1:99 +chr11 118430519 . C T 99 . DP=18;AF1=1;CI95=1,1;DP4=0,0,9,7;MQ=50 PL:DP:SP:GT:GQ 154,48,0:16:0:1/1:99 +chr11 118435672 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 118451901 . T C 99 . DP=25;AF1=1;CI95=1,1;DP4=0,0,20,0;MQ=45 PL:DP:SP:GT:GQ 189,60,0:20:0:1/1:99 +chr11 118468288 . TAG TAGAGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 118471423 . T C 10.2 . DP=29;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 41,6,0:2:0:1/1:49 +chr11 118479633 . C CTTGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 118486458 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 118486670 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 118488766 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 118495231 . AGCCTGC AGC 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr11 118498889 . C A 16.1 . DP=41;AF1=0.5;CI95=0.5,0.5;DP4=13,6,0,9;MQ=49;PV4=0.00083,0.004,0.0055,1 PL:DP:SP:GT:GQ 46,0,255:28:31:0/1:49 +chr11 118507659 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 118527534 . C G 28 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=2,2,1,3;MQ=48;PV4=1,0.034,0.087,1 PL:DP:SP:GT:GQ 58,0,127:8:0:0/1:61 +chr11 118563301 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 118574771 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 118594311 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 118603256 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 118609855 . aacc a 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 118622383 . CTT CTTAATT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 118655909 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 118681360 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 118714297 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 118746208 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 118764239 . GG GGTG 7.52 . INDEL;DP=2;AF1=0.5263;CI95=0.5,1;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,10:2:0:0/1:13 +chr11 118766888 . AG AGACG 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 118769032 . G A 51 . DP=12;AF1=1;CI95=1,1;DP4=0,0,11,0;MQ=50 PL:DP:SP:GT:GQ 84,33,0:11:0:1/1:99 +chr11 118769668 . GTT GT 3.93 . INDEL;DP=14;AF1=0.5263;CI95=0.5,1;DP4=0,1,1,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 39,0,10:3:0:0/1:13 +chr11 118769669 . TTG TTTCCTG 7.36 . INDEL;DP=11;AF1=0.5016;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,22:2:0:0/1:25 +chr11 118772474 . G T 15.1 . DP=9;AF1=0.5;CI95=0.5,0.5;DP4=0,3,3,0;MQ=48;PV4=0.1,0.084,0.046,0.44 PL:DP:SP:GT:GQ 45,0,79:6:10:0/1:48 +chr11 118774231 . C T 5.46 . DP=9;AF1=0.5004;CI95=0.5,0.5;DP4=0,2,0,2;MQ=48;PV4=1,1,0.048,0.046 PL:DP:SP:GT:GQ 34,0,27:4:0:0/1:29 +chr11 118777190 . G A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 118782323 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 118800189 . CT CTGTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 118855718 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 118869561 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 118873910 . TGG TGGG 86.5 . INDEL;DP=8;AF1=1;CI95=1,1;DP4=0,0,7,1;MQ=31 PL:DP:SP:GT:GQ 127,24,0:8:0:1/1:96 +chr11 118882571 . G T 4.13 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,2,0;MQ=49;PV4=1,0.27,0.048,1 PL:DP:SP:GT:GQ 32,0,53:4:0:0/1:35 +chr11 118888683 . G A 4.13 . DP=5;AF1=0.4998;CI95=0.5,0.5;DP4=2,0,1,0;MQ=47;PV4=1,1,0.089,1 PL:DP:SP:GT:GQ 32,0,63:3:0:0/1:35 +chr11 118916222 . C CAA 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 118918150 . G C 7.8 . DP=2;AF1=0.5002;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,30:2:0:0/1:32 +chr11 118919206 . T C 75.5 . DP=9;AF1=0.9998;CI95=0.5,1;DP4=0,1,4,2;MQ=47;PV4=0.43,1,1,1 PL:DP:SP:GT:GQ 105,2,0:7:0:1/1:37 +chr11 118920453 . T C 47.3 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=48 PL:DP:SP:GT:GQ 80,15,0:5:0:1/1:75 +chr11 118923519 . G GCGCCCCCTGGGTT 99 . INDEL;DP=43;AF1=1;CI95=1,1;DP4=0,0,14,27;MQ=50 PL:DP:SP:GT:GQ 255,123,0:41:0:1/1:99 +chr11 118941097 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 118959732 . C T 70.2 . DP=8;AF1=0.7303;CI95=0.5,1;DP4=1,0,6,0;MQ=47;PV4=1,1,0.12,1 PL:DP:SP:GT:GQ 99,0,2:7:0:0/1:3 +chr11 118962816 . C A 63.5 . DP=41;AF1=1;CI95=0.5,1;DP4=1,0,3,4;MQ=48;PV4=1,0.49,0.27,1 PL:DP:SP:GT:GQ 94,4,0:8:0:1/1:45 +chr11 118967758 . T C 99 . DP=49;AF1=1;CI95=1,1;DP4=0,0,16,27;MQ=43 PL:DP:SP:GT:GQ 255,129,0:43:0:1/1:99 +chr11 118970875 . T C 25 . DP=6;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=46 PL:DP:SP:GT:GQ 57,9,0:3:0:1/1:63 +chr11 118970878 . A C 3.02 . DP=6;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 118979092 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 118985151 . T C 68.5 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=44 PL:DP:SP:GT:GQ 101,12,0:4:0:1/1:72 +chr11 119003322 . C A 13 . DP=13;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=49 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr11 119005088 . C T 92.1 . DP=50;AF1=1;CI95=1,1;DP4=0,0,1,6;MQ=46 PL:DP:SP:GT:GQ 125,21,0:7:0:1/1:84 +chr11 119005132 . C T 74.1 . DP=24;AF1=1;CI95=0.5,1;DP4=0,0,2,4;MQ=48 PL:DP:SP:GT:GQ 107,18,0:6:0:1/1:90 +chr11 119006416 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 119031118 . A C 5.46 . DP=27;AF1=0.4999;CI95=0.5,0.5;DP4=5,3,2,3;MQ=49;PV4=0.59,0.03,0.00044,0.3 PL:DP:SP:GT:GQ 34,0,177:13:2:0/1:37 +chr11 119031841 . GCCC GCCCC 99 . INDEL;DP=25;AF1=1;CI95=1,1;DP4=0,0,0,19;MQ=50 PL:DP:SP:GT:GQ 169,57,0:19:0:1/1:99 +chr11 119031845 . T TC 3.81 . INDEL;DP=22;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 119032374 . TG TGCAACAG 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 119034191 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 119037343 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 119043745 . C T 99 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,9;MQ=46;PV4=0.25,1,0.00079,1 PL:DP:SP:GT:GQ 166,0,55:12:0:0/1:58 +chr11 119050896 . C T 72 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=4,7,2,5;MQ=49;PV4=1,0.003,0.0032,1 PL:DP:SP:GT:GQ 102,0,255:18:0:0/1:99 +chr11 119052826 . C A 73 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=2,10,3,4;MQ=49;PV4=0.3,1.8e-05,0.001,0.44 PL:DP:SP:GT:GQ 103,0,255:19:5:0/1:99 +chr11 119059404 . G A 23 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=8,0,3,2;MQ=49;PV4=0.13,0.00045,0.03,1 PL:DP:SP:GT:GQ 53,0,172:13:9:0/1:56 +chr11 119061178 . T C 22 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=4,2,0,4;MQ=48;PV4=0.076,0.054,0.044,0.43 PL:DP:SP:GT:GQ 52,0,159:10:11:0/1:55 +chr11 119063762 . C T 3.54 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=3,0,1,0;MQ=48;PV4=1,0.15,0,0.42 PL:DP:SP:GT:GQ 31,0,114:4:0:0/1:34 +chr11 119063908 . C T 99 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=3,7,4,15;MQ=49;PV4=0.66,4.4e-08,0.11,1 PL:DP:SP:GT:GQ 147,0,236:29:2:0/1:99 +chr11 119065725 . GC GCTGCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 119126128 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 119142396 . A C 4.86 . DP=5;AF1=0.5162;CI95=0.5,0.5;DP4=1,0,2,0;MQ=45;PV4=1,1,0,1 PL:DP:SP:GT:GQ 33,0,12:3:0:0/1:15 +chr11 119148584 . C G 21 . DP=20;AF1=0.5;CI95=0.5,0.5;DP4=0,10,0,4;MQ=48;PV4=1,0.079,0.1,0.023 PL:DP:SP:GT:GQ 51,0,174:14:0:0/1:54 +chr11 119149328 . GGAG GGAGAG 11.8 . INDEL;DP=23;AF1=0.5;CI95=0.5,0.5;DP4=0,4,2,0;MQ=50;PV4=0.067,0.28,1,1 PL:DP:SP:GT:GQ 49,0,125:6:12:0/1:52 +chr11 119149329 . GAGCAG GAG 20.5 . INDEL;DP=21;AF1=0.5;CI95=0.5,0.5;DP4=0,4,2,0;MQ=50;PV4=0.067,0.14,1,0.32 PL:DP:SP:GT:GQ 58,0,128:6:12:0/1:61 +chr11 119149331 . GC GCTC 10.8 . INDEL;DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,3,4,0;MQ=50;PV4=0.029,0.4,1,1 PL:DP:SP:GT:GQ 48,0,77:7:15:0/1:51 +chr11 119169408 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 119181970 . T TTCCACTATGA 3.25 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=1,2,1,0;MQ=50;PV4=1,0.015,1,1 PL:DP:SP:GT:GQ 38,0,130:4:0:0/1:41 +chr11 119189111 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 119194332 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 119203906 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 119211822 . A G 5.47 . DP=2;AF1=0.5009;CI95=0.5,0.5;DP4=1,0,0,1;MQ=44;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,24:2:0:0/1:27 +chr11 119213303 . C T 5.46 . DP=17;AF1=0.4999;CI95=0.5,0.5;DP4=4,0,2,1;MQ=50;PV4=0.43,5.7e-05,0.14,1 PL:DP:SP:GT:GQ 34,0,136:7:0:0/1:37 +chr11 119213399 . C G 8.64 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=3,3,4,0;MQ=49;PV4=0.2,0.19,0.057,0.087 PL:DP:SP:GT:GQ 38,0,89:10:7:0/1:41 +chr11 119213400 . T A 23 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=4,2,4,1;MQ=49;PV4=1,0.31,0.22,1 PL:DP:SP:GT:GQ 53,0,78:11:0:0/1:56 +chr11 119216231 . A G 99 . DP=29;AF1=1;CI95=1,1;DP4=0,1,0,25;MQ=48;PV4=1,1,0.17,1 PL:DP:SP:GT:GQ 164,58,0:26:0:1/1:99 +chr11 119229964 . G A 77 . DP=33;AF1=0.5;CI95=0.5,0.5;DP4=14,2,11,1;MQ=49;PV4=1,9.5e-07,0.0067,1 PL:DP:SP:GT:GQ 107,0,255:28:0:0/1:99 +chr11 119235802 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 119239356 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 119240071 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 119244095 . C T 82 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=2,0,4,0;MQ=45;PV4=1,1,0,1 PL:DP:SP:GT:GQ 112,0,50:6:0:0/1:53 +chr11 119274570 . A G 6.98 . DP=12;AF1=0.4999;CI95=0.5,0.5;DP4=4,1,0,3;MQ=48;PV4=0.14,0.12,0.38,1 PL:DP:SP:GT:GQ 36,0,120:8:8:0/1:39 +chr11 119274840 . TGA T 4.42 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 119274844 . A AGCT 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 119290964 . T C 10.4 . DP=30;AF1=0.5;CI95=0.5,0.5;DP4=3,9,0,5;MQ=48;PV4=0.51,0.13,0.085,1 PL:DP:SP:GT:GQ 40,0,212:17:3:0/1:43 +chr11 119291688 . A G 68 . DP=12;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=49 PL:DP:SP:GT:GQ 101,27,0:9:0:1/1:99 +chr11 119299718 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 119322430 . G T 9.53 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 119359006 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 119383391 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 119390338 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 119438915 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 119453632 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 119478471 . T TTCTTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 119501475 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 119509625 . C T 14.9 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 46,6,0:2:0:1/1:49 +chr11 119510644 . A C 15.1 . DP=37;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=50 PL:DP:SP:GT:GQ 47,9,0:3:0:1/1:63 +chr11 119538783 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 119570917 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 119585654 . G C 3.54 . DP=3;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,1;MQ=47;PV4=1,0.28,0.29,0.28 PL:DP:SP:GT:GQ 31,0,36:3:0:0/1:33 +chr11 119596353 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 119622944 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 119641793 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 119647146 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 119669321 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 119686194 . cttt c 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 119688882 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 119692663 . T C 99 . DP=17;AF1=1;CI95=1,1;DP4=0,0,5,8;MQ=45 PL:DP:SP:GT:GQ 247,39,0:13:0:1/1:99 +chr11 119700701 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 119722638 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 119730294 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 119764820 . C G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 119779477 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 119799109 . a aAGACAGAG 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 119842018 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 119857468 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 119857480 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 119886921 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 119887955 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 119890617 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 119897700 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 119908771 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 119937800 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 119948159 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 119999191 . A G 54.1 . DP=17;AF1=1;CI95=1,1;DP4=0,0,0,7;MQ=48 PL:DP:SP:GT:GQ 87,21,0:7:0:1/1:84 +chr11 120009190 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 120047578 . C G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 120048892 . A ATGGTC 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 120052266 . C CCCACCCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 120055425 . GAC G 6.56 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 120076630 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 120098788 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 120107049 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 120132665 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 120146500 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 120150801 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 120169999 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 120170521 . T C 20 . DP=13;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 52,9,0:3:0:1/1:63 +chr11 120175650 . GTa GTATCTGATGCTa 7.42 . INDEL;DP=3;AF1=0.5101;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,14:2:0:0/1:17 +chr11 120175747 . GC GCGCC 48.5 . INDEL;DP=23;AF1=0.5;CI95=0.5,0.5;DP4=2,2,2,1;MQ=50;PV4=1,1,1,0.39 PL:DP:SP:GT:GQ 86,0,116:7:0:0/1:89 +chr11 120175749 . A G 87.1 . DP=21;AF1=0.505;CI95=0.5,0.5;DP4=2,0,3,6;MQ=49;PV4=0.18,0.21,0.23,1 PL:DP:SP:GT:GQ 117,0,17:11:7:0/1:20 +chr11 120198093 . G A 81.5 . DP=37;AF1=1;CI95=0.5,1;DP4=0,1,7,2;MQ=48;PV4=0.3,0.42,0.24,1 PL:DP:SP:GT:GQ 113,7,0:10:0:1/1:57 +chr11 120245664 . T TAGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 120264404 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 120276126 . TG TGG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 120280437 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 120310978 . A C 19.1 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=0,12,0,12;MQ=50;PV4=1,3.4e-14,1,1 PL:DP:SP:GT:GQ 49,0,220:24:0:0/1:52 +chr11 120318678 . TC TCGCCC 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 120322304 . T A 30 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=10,2,0,7;MQ=49;PV4=0.00071,1.8e-05,0.042,0.33 PL:DP:SP:GT:GQ 60,0,255:19:31:0/1:63 +chr11 120325974 . A G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 120330019 . T G 11.3 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=1,4,1,3;MQ=50;PV4=1,0.0017,0.059,0.46 PL:DP:SP:GT:GQ 41,0,166:9:0:0/1:44 +chr11 120363487 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 120371010 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 120379556 . T A 24.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=45 PL:DP:SP:GT:GQ 56,6,0:2:0:1/1:49 +chr11 120380776 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 120405437 . C T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 120408283 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 120419753 . G A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 120427960 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 120467741 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 120490732 . G C 6.98 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=43;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,37:2:0:0/1:36 +chr11 120497224 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 120499478 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 120537754 . g gTTA 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 120584054 . A C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 120658634 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 120713897 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=46 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 120717446 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 120717899 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 120734639 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 120739942 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 120741147 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 120745874 . C T 21 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=9,1,5,0;MQ=49;PV4=1,0.26,0.01,0.37 PL:DP:SP:GT:GQ 51,0,151:15:0:0/1:54 +chr11 120745967 . A G 62 . DP=22;AF1=1;CI95=1,1;DP4=0,1,0,18;MQ=49;PV4=1,1,0.38,1 PL:DP:SP:GT:GQ 95,39,0:19:0:1/1:99 +chr11 120751098 . c cTT 4.42 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 120790821 . g gGCAGTCC 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=49 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 120819156 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 120823528 . A G 30 . DP=26;AF1=1;CI95=1,1;DP4=1,0,20,0;MQ=50;PV4=1,0.0018,0.41,1 PL:DP:SP:GT:GQ 63,33,0:21:0:1/1:99 +chr11 120827609 . A G 46.8 . DP=28;AF1=1;CI95=0.5,1;DP4=1,0,0,7;MQ=49;PV4=0.12,1,0.26,1 PL:DP:SP:GT:GQ 79,10,0:8:0:1/1:60 +chr11 120831520 . T C 84.8 . DP=11;AF1=0.95;CI95=0.5,1;DP4=1,0,7,0;MQ=46;PV4=1,1,0.11,1 PL:DP:SP:GT:GQ 113,0,0:8:0:1/1:10 +chr11 120835136 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 120852961 . C A 99 . DP=49;AF1=1;CI95=1,1;DP4=1,0,11,32;MQ=47;PV4=0.27,0.15,0.054,1 PL:DP:SP:GT:GQ 255,101,0:44:0:1/1:99 +chr11 120858608 . GAAACAAACA GAAACA 52.2 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=50 PL:DP:SP:GT:GQ 91,6,0:2:0:1/1:49 +chr11 120872322 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 120934312 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 120962894 . G GGAAGATAAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 120979923 . A G 5.46 . DP=12;AF1=0.4999;CI95=0.5,0.5;DP4=0,3,3,0;MQ=49;PV4=0.1,0.074,0.13,1 PL:DP:SP:GT:GQ 34,0,67:6:10:0/1:37 +chr11 120982516 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 120996292 . A G 3.01 . DP=37;AF1=0.4997;CI95=0.5,0.5;DP4=10,8,3,3;MQ=49;PV4=1,0.00031,0.25,1 PL:DP:SP:GT:GQ 30,0,255:24:0:0/1:33 +chr11 120996311 . G T 12.3 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=5,12,6,0;MQ=48;PV4=0.0046,0.0092,0.32,1 PL:DP:SP:GT:GQ 42,0,255:23:23:0/1:45 +chr11 120996316 . C T 3.01 . DP=33;AF1=0.4997;CI95=0.5,0.5;DP4=8,11,5,0;MQ=49;PV4=0.041,0.0052,0.014,0.46 PL:DP:SP:GT:GQ 30,0,255:24:14:0/1:33 +chr11 120996412 . G T 11.3 . DP=55;AF1=0.5;CI95=0.5,0.5;DP4=22,9,3,10;MQ=49;PV4=0.0066,1.2e-05,4.9e-07,0.079 PL:DP:SP:GT:GQ 41,0,255:44:22:0/1:44 +chr11 121018051 . C CAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 121028598 . T G 5.46 . DP=21;AF1=0.4999;CI95=0.5,0.5;DP4=3,2,0,4;MQ=47;PV4=0.17,0.25,0.0033,1 PL:DP:SP:GT:GQ 34,0,95:9:8:0/1:37 +chr11 121028601 . C T 6.2 . DP=24;AF1=0.4999;CI95=0.5,0.5;DP4=5,2,0,5;MQ=48;PV4=0.028,0.03,0.038,1 PL:DP:SP:GT:GQ 35,0,161:12:16:0/1:38 +chr11 121032978 . G A 49.3 . DP=52;AF1=1;CI95=0.5,1;DP4=0,0,2,3;MQ=49 PL:DP:SP:GT:GQ 82,15,0:5:0:1/1:75 +chr11 121036177 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 121038810 . C T 99 . DP=62;AF1=0.5;CI95=0.5,0.5;DP4=21,18,13,7;MQ=49;PV4=0.58,7.1e-23,8.6e-05,0.24 PL:DP:SP:GT:GQ 139,0,255:59:2:0/1:99 +chr11 121053042 . g gATCC 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr11 121059749 . T C 23 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=6,0,4,0;MQ=49;PV4=1,1,0.045,0.47 PL:DP:SP:GT:GQ 53,0,61:10:0:0/1:55 +chr11 121059750 . A G 24 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=3,0,5,0;MQ=49;PV4=1,0.22,1,0.11 PL:DP:SP:GT:GQ 54,0,41:8:0:0/1:44 +chr11 121084399 . tc tCGCc 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 121091021 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 121091736 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 121167006 . G T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 121178175 . G C 3.01 . DP=18;AF1=0.4997;CI95=0.5,0.5;DP4=3,4,0,3;MQ=48;PV4=0.47,0.12,0.46,1 PL:DP:SP:GT:GQ 30,0,148:10:3:0/1:33 +chr11 121179987 . G T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 121205761 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 121233586 . G C 17.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=45 PL:DP:SP:GT:GQ 49,6,0:2:0:1/1:49 +chr11 121252832 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 121334739 . C G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 121342365 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 121367626 . T C 29 . DP=44;AF1=0.5;CI95=0.5,0.5;DP4=21,13,4,5;MQ=49;PV4=0.46,4.5e-08,3.8e-07,0.044 PL:DP:SP:GT:GQ 59,0,255:43:3:0/1:62 +chr11 121376569 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 121394733 . G T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 121403229 . T C 60.1 . DP=38;AF1=1;CI95=0.5,1;DP4=1,0,1,9;MQ=48;PV4=0.18,0.031,1,1 PL:DP:SP:GT:GQ 91,5,0:11:0:1/1:46 +chr11 121403345 . T C 42.1 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,6;MQ=50 PL:DP:SP:GT:GQ 75,18,0:6:0:1/1:90 +chr11 121411064 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 121414456 . A C 42.5 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=48 PL:DP:SP:GT:GQ 75,12,0:4:0:1/1:72 +chr11 121416187 . A C 3.98 . DP=25;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 33,6,0:2:0:1/1:49 +chr11 121420632 . A C 29 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=3,0,6,0;MQ=49;PV4=1,0.18,0.11,1 PL:DP:SP:GT:GQ 59,0,43:9:0:0/1:46 +chr11 121424453 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 121425810 . A G 26 . DP=10;AF1=1;CI95=0.5,1;DP4=0,0,3,0;MQ=46 PL:DP:SP:GT:GQ 58,9,0:3:0:1/1:63 +chr11 121425812 . T C 12.3 . DP=12;AF1=0.5002;CI95=0.5,0.5;DP4=2,0,3,0;MQ=47;PV4=1,0.32,0.38,0.38 PL:DP:SP:GT:GQ 42,0,30:5:0:0/1:33 +chr11 121425817 . G T 4.13 . DP=10;AF1=0.4999;CI95=0.5,0.5;DP4=2,0,3,0;MQ=49;PV4=1,0.0076,0.41,1 PL:DP:SP:GT:GQ 32,0,42:5:0:0/1:35 +chr11 121437819 . C G 99 . DP=20;AF1=1;CI95=1,1;DP4=0,0,1,12;MQ=48 PL:DP:SP:GT:GQ 142,39,0:13:0:1/1:99 +chr11 121438863 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 121444863 . TT TTCCGT 5.8 . INDEL;DP=11;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 121444864 . TT TTGCT 12.7 . INDEL;DP=11;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 121445084 . T C 10.5 . DP=28;AF1=0.5128;CI95=0.5,0.5;DP4=0,1,1,1;MQ=48;PV4=1,1,0.33,1 PL:DP:SP:GT:GQ 40,0,13:3:0:0/1:16 +chr11 121458645 . G A 22 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=14,0,11,0;MQ=50;PV4=1,9.1e-15,0.13,1 PL:DP:SP:GT:GQ 52,0,232:25:0:0/1:55 +chr11 121461921 . C T 3.54 . DP=14;AF1=0.4998;CI95=0.5,0.5;DP4=0,6,0,3;MQ=49;PV4=1,0.25,0.053,1 PL:DP:SP:GT:GQ 31,0,95:9:0:0/1:34 +chr11 121475798 . T A 99 . DP=15;AF1=1;CI95=1,1;DP4=0,0,10,2;MQ=46 PL:DP:SP:GT:GQ 186,36,0:12:0:1/1:99 +chr11 121483269 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 121491782 . G A 83 . DP=30;AF1=1;CI95=1,1;DP4=0,0,8,3;MQ=49 PL:DP:SP:GT:GQ 116,33,0:11:0:1/1:99 +chr11 121498259 . G GTAGGA 5.08 . INDEL;DP=12;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,55:3:0:0/1:44 +chr11 121498260 . GC GCTGTTAC 7.41 . INDEL;DP=12;AF1=0.508;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,15:2:0:0/1:18 +chr11 121498264 . GT GTTT 8.19 . INDEL;DP=10;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 121505440 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 121529711 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 121531478 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 121605856 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 121607200 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 121632694 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 121636027 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 121672313 . C T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 121681165 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 121706322 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 121723081 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 121758079 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 121781516 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 121788741 . C CTCAAAGAT 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 121805346 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 121808403 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 121809518 . T TATTATA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 121852665 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 121875371 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 121917679 . G T 4.61 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=49 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 121921255 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 121936541 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 121937987 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 122029054 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 122029798 . A ATTAATAAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 122035515 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 122084406 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 122127464 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 122174801 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 122187884 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 122205048 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 122295088 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 122308509 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 122345706 . G GGCGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 122353112 . T G 6.02 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=44 PL:DP:SP:GT:GQ 36,6,0:2:0:1/1:49 +chr11 122365223 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 122366433 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 122410534 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 122421837 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 122441198 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 122475251 . G A 5.46 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,37:2:0:0/1:35 +chr11 122485346 . G GGGTCTAA 3.25 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,0.28,1,1 PL:DP:SP:GT:GQ 38,0,114:4:0:0/1:41 +chr11 122489595 . G A 4.13 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 122489617 . T C 3.55 . DP=4;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 122490000 . T C 7.59 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=49 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr11 122496939 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 122529354 . g gTATAAAAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 122607734 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 122612093 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 122615099 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 122626320 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 122631817 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 122638444 . AAG AAGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 122650172 . C G 77.1 . DP=11;AF1=1;CI95=1,1;DP4=0,0,7,0;MQ=47 PL:DP:SP:GT:GQ 110,21,0:7:0:1/1:84 +chr11 122653713 . C G 3.01 . DP=22;AF1=0.4997;CI95=0.5,0.5;DP4=7,0,3,0;MQ=49;PV4=1,0.00047,0.027,1 PL:DP:SP:GT:GQ 30,0,185:10:0:0/1:33 +chr11 122660620 . G A 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 122665437 . A G 99 . DP=41;AF1=1;CI95=1,1;DP4=0,1,14,20;MQ=44;PV4=1,1,0.00077,1 PL:DP:SP:GT:GQ 255,82,0:35:0:1/1:99 +chr11 122665646 . C T 6.98 . DP=2;AF1=0.5003;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 36,0,29:2:0:0/1:31 +chr11 122667772 . C T 3.54 . DP=19;AF1=0.4998;CI95=0.5,0.5;DP4=2,2,0,2;MQ=48;PV4=0.47,0.39,0.064,0.24 PL:DP:SP:GT:GQ 31,0,91:6:3:0/1:34 +chr11 122667772 . CA CACTA 3.25 . INDEL;DP=19;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,1;MQ=50;PV4=1,1,1,0.21 PL:DP:SP:GT:GQ 38,0,76:4:0:0/1:41 +chr11 122671944 . T G 21 . DP=46;AF1=0.5;CI95=0.5,0.5;DP4=17,8,0,12;MQ=49;PV4=7.1e-05,4.2e-05,0.002,1 PL:DP:SP:GT:GQ 51,0,255:37:41:0/1:54 +chr11 122672383 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 122676311 . a aGCG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 122689559 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 122691831 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 122709108 . A AT 3.81 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 122709178 . T C 15.1 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=5,0,4,0;MQ=49;PV4=1,0.023,0.053,0.39 PL:DP:SP:GT:GQ 45,0,131:9:0:0/1:48 +chr11 122742050 . T C 99 . DP=26;AF1=0.5;CI95=0.5,0.5;DP4=4,6,3,10;MQ=48;PV4=0.65,2e-06,7.2e-07,1 PL:DP:SP:GT:GQ 173,0,255:23:2:0/1:99 +chr11 122763483 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 122775227 . T C 23 . DP=13;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=48 PL:DP:SP:GT:GQ 55,9,0:3:0:1/1:63 +chr11 122795699 . A T 57 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,7;MQ=47;PV4=0.22,0.11,1,1 PL:DP:SP:GT:GQ 87,0,42:9:0:0/1:45 +chr11 122827171 . T C 34 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=5,0,6,0;MQ=48;PV4=1,0.019,0.16,1 PL:DP:SP:GT:GQ 64,0,117:11:0:0/1:67 +chr11 122830214 . G A 50.2 . DP=18;AF1=1;CI95=0.5,1;DP4=0,1,0,13;MQ=50;PV4=1,0.081,0.38,1 PL:DP:SP:GT:GQ 83,16,0:14:0:1/1:80 +chr11 122831622 . G C 13.9 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=44 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr11 122839559 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 122848045 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 122853080 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 122859427 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 122888678 . G C 10.4 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=1,0,2,0;MQ=47;PV4=1,0.037,0,1 PL:DP:SP:GT:GQ 40,0,40:3:0:0/1:40 +chr11 122888804 . T G 10.4 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=5,1,2,1;MQ=49;PV4=1,1,0.0056,0.12 PL:DP:SP:GT:GQ 40,0,85:9:0:0/1:43 +chr11 122895102 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 122906650 . T C 4.77 . DP=8;AF1=0.4999;CI95=0.5,0.5;DP4=1,2,0,3;MQ=42;PV4=1,1.9e-05,0.074,1 PL:DP:SP:GT:GQ 33,0,120:6:0:0/1:36 +chr11 122914719 . c cCCTTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 122928622 . A G 33.5 . DP=19;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=34 PL:DP:SP:GT:GQ 66,12,0:4:0:1/1:72 +chr11 122929955 . T C 13 . DP=9;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr11 122930127 . gcgaGTC gCGAGTcgaGTC 99 . INDEL;DP=23;AF1=0.5;CI95=0.5,0.5;DP4=9,0,12,0;MQ=50;PV4=1,1,1,0.065 PL:DP:SP:GT:GQ 211,0,124:21:0:0/1:99 +chr11 122931570 . A G 62 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,8,0,8;MQ=48;PV4=1,6.7e-11,6.5e-06,1 PL:DP:SP:GT:GQ 92,0,195:16:0:0/1:95 +chr11 122944319 . C A 18.1 . DP=23;AF1=0.5;CI95=0.5,0.5;DP4=0,6,0,4;MQ=49;PV4=1,0.17,0.00028,1 PL:DP:SP:GT:GQ 48,0,97:10:0:0/1:51 +chr11 122944324 . C T 4.77 . DP=22;AF1=0.4999;CI95=0.5,0.5;DP4=0,6,0,5;MQ=49;PV4=1,1,0.045,1 PL:DP:SP:GT:GQ 33,0,56:11:0:0/1:36 +chr11 122950866 . a aGGTATG 7.35 . INDEL;DP=2;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,33:2:0:0/1:36 +chr11 122955402 . C T 99 . DP=55;AF1=0.5;CI95=0.5,0.5;DP4=18,25,6,4;MQ=49;PV4=0.48,0.00015,6.6e-25,0.081 PL:DP:SP:GT:GQ 137,0,255:53:3:0/1:99 +chr11 122965501 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 122980586 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 122989146 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 122990357 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 122993253 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 123006654 . C A 8.64 . DP=5;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,2;MQ=48;PV4=1,0.013,0.15,1 PL:DP:SP:GT:GQ 38,0,80:4:0:0/1:41 +chr11 123017102 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 123046594 . C CAAGAGAGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 123055453 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 123059021 . G A 25.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=46 PL:DP:SP:GT:GQ 57,6,0:2:0:1/1:49 +chr11 123063715 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 123066378 . t tTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 123112343 . A T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 123117568 . G T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 123136266 . G T 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 123167695 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 123174437 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 123174862 . G T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 123265233 . tt tTGGCt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 123273176 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 123281434 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 123303378 . T C 13.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=46 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr11 123336599 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 123390406 . G GTAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 123427243 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 123433293 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 123449768 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 123452518 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 123454861 . AAG A 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 123469789 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 123470174 . C T 99 . DP=14;AF1=1;CI95=1,1;DP4=0,1,0,12;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 154,25,0:13:0:1/1:99 +chr11 123477113 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 123493523 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 123494587 . G GGATCGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 123496692 . G T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 123509104 . T C 11.3 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=49;PV4=1,0.28,0.066,1 PL:DP:SP:GT:GQ 41,0,49:6:0:0/1:43 +chr11 123509873 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 123511241 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 123524411 . G A 59 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=6,0,10,0;MQ=49;PV4=1,2.8e-08,0.11,0.27 PL:DP:SP:GT:GQ 89,0,157:16:0:0/1:92 +chr11 123593103 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 123593128 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 123597115 . T C 6.2 . DP=35;AF1=0.4999;CI95=0.5,0.5;DP4=15,3,1,6;MQ=49;PV4=0.0029,0.0058,0.0036,1 PL:DP:SP:GT:GQ 35,0,255:25:25:0/1:38 +chr11 123598941 . T C 99 . DP=77;AF1=0.5;CI95=0.5,0.5;DP4=25,14,15,17;MQ=49;PV4=0.16,3.1e-31,0.0027,0.14 PL:DP:SP:GT:GQ 162,0,255:71:8:0/1:99 +chr11 123614189 . T TGTCCAAAGGACCAAC 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 123627104 . G GTAGCATT 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=49 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 123627519 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 123627796 . T G 42.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=42 PL:DP:SP:GT:GQ 74,6,0:2:0:1/1:49 +chr11 123637200 . G T 3.01 . DP=3;AF1=0.4997;CI95=0.5,0.5;DP4=0,2,0,1;MQ=42;PV4=1,0.36,0.4,1 PL:DP:SP:GT:GQ 30,0,71:3:0:0/1:33 +chr11 123645198 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 123651701 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 123675864 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 123676231 . G T 21 . DP=50;AF1=0.5;CI95=0.5,0.5;DP4=4,24,0,12;MQ=49;PV4=0.3,4.7e-07,0.0064,1 PL:DP:SP:GT:GQ 51,0,255:40:5:0/1:54 +chr11 123687219 . g gCGCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 123694057 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 123753937 . A G 99 . DP=56;AF1=0.5;CI95=0.5,0.5;DP4=5,14,6,22;MQ=48;PV4=0.74,2.6e-10,8.2e-11,1 PL:DP:SP:GT:GQ 226,0,255:47:1:0/1:99 +chr11 123754844 . T C 12.3 . DP=51;AF1=0.5;CI95=0.5,0.5;DP4=1,1,1,1;MQ=48;PV4=1,1,0.029,1 PL:DP:SP:GT:GQ 42,0,36:4:0:0/1:38 +chr11 123777497 . G A 99 . DP=49;AF1=0.5;CI95=0.5,0.5;DP4=3,8,10,11;MQ=46;PV4=0.45,0.26,0.0001,1 PL:DP:SP:GT:GQ 255,0,162:32:3:0/1:99 +chr11 123787053 . t tTAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 123797537 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 123847231 . A G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 123847473 . A G 91 . DP=55;AF1=0.5;CI95=0.5,0.5;DP4=24,9,13,5;MQ=49;PV4=1,3.5e-13,4.3e-07,1 PL:DP:SP:GT:GQ 121,0,255:51:0:0/1:99 +chr11 123869761 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 123873369 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 123882980 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 123886681 . A G 99 . DP=12;AF1=1;CI95=0.5,1;DP4=0,1,4,7;MQ=47;PV4=1,1,0.13,1 PL:DP:SP:GT:GQ 188,9,0:12:0:1/1:63 +chr11 123887009 . AC ACACC 5.08 . INDEL;DP=5;AF1=0.5;CI95=0.5,0.5;DP4=2,0,0,1;MQ=50;PV4=0.33,1,1,1 PL:DP:SP:GT:GQ 41,0,47:3:0:0/1:43 +chr11 123893781 . T A 3.54 . DP=10;AF1=0.4998;CI95=0.5,0.5;DP4=0,4,1,1;MQ=49;PV4=0.33,0.12,0.089,1 PL:DP:SP:GT:GQ 31,0,107:6:0:0/1:34 +chr11 123900890 . C G 6.98 . DP=25;AF1=0.4999;CI95=0.5,0.5;DP4=6,2,0,4;MQ=49;PV4=0.061,0.092,0.23,1 PL:DP:SP:GT:GQ 36,0,167:12:12:0/1:39 +chr11 123905026 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 123909688 . CA CACGA 3.25 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,3,1,0;MQ=49;PV4=0.25,1,1,1 PL:DP:SP:GT:GQ 38,0,92:4:0:0/1:41 +chr11 123946058 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 123946086 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 123988195 . T G 6.2 . DP=37;AF1=0.4999;CI95=0.5,0.5;DP4=6,3,5,0;MQ=49;PV4=0.26,0.22,1,1 PL:DP:SP:GT:GQ 35,0,118:14:6:0/1:38 +chr11 123988205 . A C 62 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=4,2,4,4;MQ=48;PV4=0.63,1,0.046,0.17 PL:DP:SP:GT:GQ 92,0,73:14:2:0/1:76 +chr11 124005692 . CA CAAA 3.8 . INDEL;DP=25;AF1=0.5;CI95=0.5,0.5;DP4=6,4,0,3;MQ=50;PV4=0.19,0.28,1,0.051 PL:DP:SP:GT:GQ 39,0,239:13:7:0/1:42 +chr11 124007212 . G C 3.58 . DP=2;AF1=0.5078;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,15:2:0:0/1:18 +chr11 124011078 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 124036096 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 124036494 . t tGTGTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 124042045 . g gTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 124053296 . A T 6.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 124053723 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 124078550 . A G 5.46 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 34,0,44:2:0:0/1:37 +chr11 124082164 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 124111480 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 124121263 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 124142660 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 124158985 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 124179656 . G T 4.13 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,1,0;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,44:2:0:0/1:35 +chr11 124179835 . C T 99 . DP=44;AF1=0.5;CI95=0.5,0.5;DP4=8,10,11,9;MQ=49;PV4=0.75,3.6e-08,0.0021,1 PL:DP:SP:GT:GQ 194,0,255:38:1:0/1:99 +chr11 124180282 . A C 8.64 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=3,3,3,0;MQ=49;PV4=0.46,0.14,0.0012,1 PL:DP:SP:GT:GQ 38,0,155:9:3:0/1:41 +chr11 124227470 . GA GATCA 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 124242136 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 124247361 . C T 22 . DP=6;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=48;PV4=1,0.00073,0.084,1 PL:DP:SP:GT:GQ 52,0,110:6:0:0/1:55 +chr11 124252249 . A ATACCTT 7.35 . INDEL;DP=2;AF1=0.5002;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,30:2:0:0/1:33 +chr11 124252978 . T G 6.2 . DP=13;AF1=0.4999;CI95=0.5,0.5;DP4=2,1,0,4;MQ=48;PV4=0.14,0.0031,1,1 PL:DP:SP:GT:GQ 35,0,78:7:8:0/1:38 +chr11 124253181 . T C 99 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=1,1,0,8;MQ=44;PV4=0.2,0.071,0.0036,1 PL:DP:SP:GT:GQ 146,0,54:10:0:0/1:57 +chr11 124266906 . C T 29 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=8,1,7,0;MQ=42;PV4=1,0.00032,1,1 PL:DP:SP:GT:GQ 59,0,193:16:0:0/1:62 +chr11 124266912 . A G 9.71 . DP=14;AF1=0.5263;CI95=0.5,1;DP4=2,0,2,0;MQ=39;PV4=1,0.41,1,1 PL:DP:SP:GT:GQ 39,0,10:4:0:0/1:13 +chr11 124275233 . TA TACTCTCATGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 124293767 . G A 30.8 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,2,0;MQ=45 PL:DP:SP:GT:GQ 62,6,0:2:0:1/1:49 +chr11 124294703 . T C 3.01 . DP=43;AF1=0.4997;CI95=0.5,0.5;DP4=4,8,0,4;MQ=50;PV4=0.52,7.9e-05,0.0019,1 PL:DP:SP:GT:GQ 30,0,255:16:3:0/1:33 +chr11 124308078 . T A 3.59 . DP=2;AF1=0.51;CI95=0.5,0.5;DP4=0,1,0,1;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,14:2:0:0/1:17 +chr11 124308998 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 124310517 . C A,G 3.98 . DP=17;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=42 PL:DP:SP:GT:GQ 45,18,32,12,0,32:3:0:1/1:49 +chr11 124325444 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 124463628 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 124487114 . G C 4.13 . DP=2;AF1=0.4999;CI95=0.5,0.5;DP4=1,0,0,1;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,44:2:0:0/1:35 +chr11 124496632 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 124509892 . T G 4.8 . DP=3;AF1=0.5062;CI95=0.5,0.5;DP4=0,1,0,2;MQ=48;PV4=1,0.43,0.33,0.17 PL:DP:SP:GT:GQ 33,0,16:3:0:0/1:19 +chr11 124543279 . G GGA 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 124545288 . T C 52 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=10,1,0,11;MQ=48;PV4=3.4e-05,7.5e-06,0.0082,1 PL:DP:SP:GT:GQ 82,0,221:22:45:0/1:85 +chr11 124577803 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 124620859 . C A 39.8 . DP=16;AF1=0.95;CI95=0.5,1;DP4=0,1,0,7;MQ=47;PV4=1,0.16,0.25,0.39 PL:DP:SP:GT:GQ 68,0,0:8:0:1/1:10 +chr11 124626117 . A C 23 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=4,2,4,0;MQ=49;PV4=0.47,0.15,3.9e-05,1 PL:DP:SP:GT:GQ 53,0,135:10:3:0/1:56 +chr11 124626739 . C CTA 7.35 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 124644132 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 124661441 . CAGAAGG C 5.08 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=2,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 41,0,70:3:0:0/1:44 +chr11 124668188 . g gTATT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 124697854 . C A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 124742147 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 124749144 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 124789755 . T C 99 . DP=47;AF1=1;CI95=1,1;DP4=1,0,10,25;MQ=44;PV4=0.31,1,6e-06,1 PL:DP:SP:GT:GQ 255,89,0:36:0:1/1:99 +chr11 124791739 . tgt tGTGACgt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 124791789 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 124793682 . T C 99 . DP=41;AF1=1;CI95=1,1;DP4=0,2,9,19;MQ=46;PV4=1,1,0.42,1 PL:DP:SP:GT:GQ 255,43,0:30:0:1/1:99 +chr11 124799279 . G GTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 124809100 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 124841549 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 124843480 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 124863481 . T G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 124868973 . t tTGTGAAGAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 124883034 . A ATCCTGAGTAC 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 124883596 . T C 11.1 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=45 PL:DP:SP:GT:GQ 42,6,0:2:0:1/1:49 +chr11 124934631 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 124934634 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 124941105 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 124949504 . AGCC A 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 124954282 . A G 65 . DP=11;AF1=1;CI95=1,1;DP4=0,0,0,8;MQ=48 PL:DP:SP:GT:GQ 98,24,0:8:0:1/1:96 +chr11 124955032 . T C 62.5 . DP=25;AF1=0.8277;CI95=0.5,1;DP4=1,0,6,1;MQ=47;PV4=1,0.32,1,0.34 PL:DP:SP:GT:GQ 91,0,1:8:0:1/1:5 +chr11 124955198 . G GATC 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 124955399 . G A 4.61 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 34,6,0:2:0:1/1:49 +chr11 124981433 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 124984855 . C T 46.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=43 PL:DP:SP:GT:GQ 78,6,0:2:0:1/1:49 +chr11 125009562 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 125013440 . ct cTCTGt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 125024062 . AGA AGACGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 125068080 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 125103360 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 125124442 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 125125277 . G T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 125126233 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 125143394 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 125149248 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 125169023 . C T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 125185418 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 125186262 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 125208635 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 125281860 . C G 20.8 . DP=4;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=41 PL:DP:SP:GT:GQ 52,6,0:2:0:1/1:49 +chr11 125298871 . A G 88.1 . DP=20;AF1=1;CI95=1,1;DP4=0,1,14,0;MQ=48;PV4=0.067,1,0.15,1 PL:DP:SP:GT:GQ 121,22,0:15:0:1/1:88 +chr11 125316073 . T A 94 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,4,0,5;MQ=46;PV4=1,0.021,9.2e-08,0.33 PL:DP:SP:GT:GQ 124,0,169:10:0:0/1:99 +chr11 125323297 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 125326026 . C T 71 . DP=22;AF1=0.5;CI95=0.5,0.5;DP4=2,6,1,11;MQ=49;PV4=0.54,6e-13,0.024,1 PL:DP:SP:GT:GQ 101,0,241:20:3:0/1:99 +chr11 125338134 . C T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 125382930 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 125436862 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 125476453 . C T 21 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=0,7,0,4;MQ=49;PV4=1,0.00037,3.4e-05,0.39 PL:DP:SP:GT:GQ 51,0,180:11:0:0/1:54 +chr11 125479363 . G A 99 . DP=61;AF1=1;CI95=1,1;DP4=0,0,30,25;MQ=47 PL:DP:SP:GT:GQ 255,166,0:55:0:1/1:99 +chr11 125479496 . C T 63.3 . DP=36;AF1=1;CI95=0.5,1;DP4=1,0,0,9;MQ=49;PV4=0.1,1,0.23,1 PL:DP:SP:GT:GQ 96,15,0:10:0:1/1:75 +chr11 125479545 . T G 5.46 . DP=20;AF1=0.4999;CI95=0.5,0.5;DP4=0,4,0,4;MQ=49;PV4=1,1,1,0.21 PL:DP:SP:GT:GQ 34,0,42:8:0:0/1:36 +chr11 125493521 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 125499415 . A G 5.29 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=48 PL:DP:SP:GT:GQ 35,6,0:2:0:1/1:49 +chr11 125513922 . A G 4.13 . DP=10;AF1=0.4998;CI95=0.5,0.5;DP4=3,0,2,0;MQ=47;PV4=1,0.44,0.067,0.18 PL:DP:SP:GT:GQ 32,0,59:5:0:0/1:35 +chr11 125525195 . A G 53.5 . DP=24;AF1=1;CI95=0.5,1;DP4=0,0,2,2;MQ=48 PL:DP:SP:GT:GQ 86,12,0:4:0:1/1:72 +chr11 125547660 . C G 99 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=13,3,12,1;MQ=48;PV4=0.61,2.9e-07,2.7e-10,1 PL:DP:SP:GT:GQ 137,0,255:29:2:0/1:99 +chr11 125547708 . A G 3.54 . DP=45;AF1=0.4998;CI95=0.5,0.5;DP4=1,20,8,0;MQ=49;PV4=2.1e-06,2.1e-06,1.6e-07,1 PL:DP:SP:GT:GQ 31,0,255:29:57:0/1:34 +chr11 125600023 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 125616483 . G T 16.6 . DP=16;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=49 PL:DP:SP:GT:GQ 49,12,0:4:0:1/1:72 +chr11 125617376 . CTTT CTT 14.4 . INDEL;DP=4;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=50 PL:DP:SP:GT:GQ 53,6,0:2:0:1/1:49 +chr11 125617610 . A G 26 . DP=44;AF1=1;CI95=0.5,1;DP4=0,0,1,2;MQ=48 PL:DP:SP:GT:GQ 58,9,0:3:0:1/1:63 +chr11 125618731 . T C 7.8 . DP=6;AF1=0.5003;CI95=0.5,0.5;DP4=0,1,0,2;MQ=44;PV4=1,0.089,1,0.32 PL:DP:SP:GT:GQ 37,0,28:3:0:0/1:30 +chr11 125644021 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 125648321 . C T 3.54 . DP=3;AF1=0.4998;CI95=0.5,0.5;DP4=1,0,2,0;MQ=49;PV4=1,0,0,0.24 PL:DP:SP:GT:GQ 31,0,41:3:0:0/1:34 +chr11 125657210 . a aCGT 10.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 48,3,0:1:0:1/1:41 +chr11 125690756 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 125763746 . C G 70 . DP=64;AF1=0.5;CI95=0.5,0.5;DP4=19,16,9,9;MQ=50;PV4=0.78,6.5e-19,0.0013,0.078 PL:DP:SP:GT:GQ 100,0,255:53:1:0/1:99 +chr11 125766044 . C A 99 . DP=71;AF1=0.5;CI95=0.5,0.5;DP4=12,17,27,7;MQ=46;PV4=0.0038,1.9e-10,2.9e-38,1 PL:DP:SP:GT:GQ 255,0,255:63:24:0/1:99 +chr11 125766361 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 125770132 . G T 15.1 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=3,5,5,0;MQ=50;PV4=0.075,0.11,0.092,0.39 PL:DP:SP:GT:GQ 45,0,154:13:11:0/1:48 +chr11 125788936 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 125794745 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 125795905 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 125800835 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 125825268 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 125830970 . A T 7.59 . DP=15;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 38,6,0:2:0:1/1:49 +chr11 125859783 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 125861967 . C T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 125864213 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 125864326 . T C 44 . DP=4;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,3;MQ=46;PV4=1,0.084,0.078,1 PL:DP:SP:GT:GQ 74,0,38:4:0:0/1:41 +chr11 125865100 . a aCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 125891269 . C T 99 . DP=36;AF1=0.5;CI95=0.5,0.5;DP4=8,10,6,6;MQ=49;PV4=1,3.2e-09,0.00031,0.12 PL:DP:SP:GT:GQ 148,0,255:30:0:0/1:99 +chr11 125902131 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 125926487 . GCC GCCCCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 125966322 . C CTCTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 125983296 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 125991317 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 125994576 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 126031321 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 126045121 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 126053619 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 126071410 . T TCTGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 126071954 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 126077417 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 126081084 . T C 12 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 43,6,0:2:0:1/1:49 +chr11 126081403 . T C 80.1 . DP=33;AF1=1;CI95=1,1;DP4=0,0,4,3;MQ=49 PL:DP:SP:GT:GQ 113,21,0:7:0:1/1:84 +chr11 126087205 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 126122180 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 126127536 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 126134928 . C T 56 . DP=46;AF1=0.5;CI95=0.5,0.5;DP4=13,7,0,13;MQ=49;PV4=0.00016,0.0056,0.12,1 PL:DP:SP:GT:GQ 86,0,255:33:38:0/1:89 +chr11 126139100 . T C 22.5 . DP=14;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=50 PL:DP:SP:GT:GQ 55,12,0:4:0:1/1:72 +chr11 126141083 . GA GATA 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 126146201 . t tCC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 126146337 . G A 8.64 . DP=42;AF1=0.5;CI95=0.5,0.5;DP4=10,23,3,3;MQ=49;PV4=0.38,1.8e-13,1.7e-09,0.44 PL:DP:SP:GT:GQ 38,0,255:39:4:0/1:41 +chr11 126148432 . T C 54.5 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,4,0;MQ=47 PL:DP:SP:GT:GQ 87,12,0:4:0:1/1:72 +chr11 126174038 . C T 96 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=6,0,13,0;MQ=48;PV4=1,9.9e-09,0.0038,0.13 PL:DP:SP:GT:GQ 126,0,155:19:0:0/1:99 +chr11 126176578 . G A 5.31 . DP=36;AF1=0.6242;CI95=0.5,1;DP4=0,1,2,1;MQ=49;PV4=1,1,1,0.19 PL:DP:SP:GT:GQ 33,0,4:4:0:0/1:6 +chr11 126191650 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 126201290 . A G 40 . DP=21;AF1=0.5;CI95=0.5,0.5;DP4=7,5,5,2;MQ=49;PV4=0.66,3.7e-07,0.021,0.42 PL:DP:SP:GT:GQ 70,0,255:19:2:0/1:73 +chr11 126201403 . T C 99 . DP=46;AF1=0.5;CI95=0.5,0.5;DP4=13,10,9,12;MQ=49;PV4=0.55,1.9e-10,0.023,1 PL:DP:SP:GT:GQ 164,0,255:44:3:0/1:99 +chr11 126201458 . A G 12.3 . DP=24;AF1=0.5;CI95=0.5,0.5;DP4=3,14,0,7;MQ=50;PV4=0.53,2.3e-08,0.08,1 PL:DP:SP:GT:GQ 42,0,255:24:3:0/1:45 +chr11 126203590 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 126209707 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 126213341 . G T 39 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=0,9,0,6;MQ=49;PV4=1,4.1e-06,0.013,0.28 PL:DP:SP:GT:GQ 69,0,205:15:0:0/1:72 +chr11 126214139 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 126226455 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 126239951 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 126255047 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 126257965 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 126262388 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 126312183 . a aCGGTCTTGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 126317462 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 126320214 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 126326971 . CAGG CAGGTTAGG 12.7 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 126326989 . A T 3.02 . DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 126346689 . C A 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 126365492 . GAT GATAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 126366481 . C CACATCACGCAGCGA 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 126368038 . G GAAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 126370714 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 126389431 . T G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 126398732 . GG GGATAG 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 126410328 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 126420675 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 126430163 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 126438999 . G GTAT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 126459372 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 126461758 . C T 13.2 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 126467785 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 126479562 . t tACGGACACACC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 126479580 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 126485101 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 126521429 . T A 3.02 . DP=2;AF1=0.501;CI95=0.5,0.5;DP4=1,0,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,23:2:0:0/1:25 +chr11 126527512 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 126529595 . AGCTT A 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 126561179 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 126578029 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 126585217 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 126588454 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 126596817 . C T 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 126598564 . GGAA G 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 126629013 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 126631621 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 126637298 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 126642633 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 126647520 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 126679165 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 126719659 . G T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 126730577 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 126733579 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 126756852 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 126784407 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 126794109 . cct cCTct 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 126819768 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 126868513 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 126879972 . T TGACCAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 126898157 . c cTGTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 126939248 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 126947711 . T C 3.78 . DP=2;AF1=0.5552;CI95=0.5,1;DP4=1,0,1,0;MQ=43;PV4=1,1,1,1 PL:DP:SP:GT:GQ 31,0,7:2:0:0/1:10 +chr11 126978958 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 126994417 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 127019456 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 127057660 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 127070845 . C CCG 5.8 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 127072110 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 127081431 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 127084929 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 127094004 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 127098904 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 127104276 . TT TTCCAACT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 127120118 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 127176465 . T C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 127230376 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 127238526 . atct a 93 . INDEL;DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=50 PL:DP:SP:GT:GQ 133,12,0:4:0:1/1:72 +chr11 127238529 . ta tATTTAa 7.49 . INDEL;DP=4;AF1=0.5207;CI95=0.5,1;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,11:2:0:0/1:14 +chr11 127239351 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=32 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 127264424 . c cGGTGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 127296133 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 127304542 . A G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 127305884 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 127306289 . gtccc g 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 127311016 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 127321602 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 127353636 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 127418576 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 127436095 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 127534203 . G A 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 127616950 . t tCA 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 127625446 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=32 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 127630741 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 127657046 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 127667497 . ccta c 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 127668834 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 127708027 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 127733542 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 127746319 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 127749331 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 127752812 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 127796247 . GA GAGTGCCGCAAAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 127805643 . t tGA 11.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 49,3,0:1:0:1/1:41 +chr11 127834857 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 127837613 . T TGCGTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 127851398 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 127874139 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 127890079 . G T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 127900846 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 127917719 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 127922254 . T C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 127950528 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 127957248 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 127979938 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 127984751 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 128003928 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 128016429 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 128018084 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 128027219 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 128052273 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 128076525 . T G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 128082409 . G A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 128167946 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 128170402 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 128195615 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 128227210 . GT GTAATCTCTCTCACCT 6.56 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 128260283 . CAGCAG C 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 128261489 . c cCGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 128277535 . G T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 128284887 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 128291615 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 128310875 . t tACGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 128313423 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 128332152 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 128333503 . T C 99 . DP=62;AF1=0.5;CI95=0.5,0.5;DP4=22,15,12,12;MQ=49;PV4=0.6,5.1e-18,0.0006,1 PL:DP:SP:GT:GQ 154,0,255:61:2:0/1:99 +chr11 128337485 . T C 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 128337684 . AA AATTACCACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 128346697 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 128351352 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 128354626 . AATA AATACATA 7.35 . INDEL;DP=3;AF1=0.5001;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,32:2:0:0/1:35 +chr11 128355762 . TGGT TGGTTTCGGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 128360590 . CA CATA 5.08 . INDEL;DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.21 PL:DP:SP:GT:GQ 41,0,83:3:0:0/1:44 +chr11 128369765 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 128403450 . T G 5.46 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 128418807 . C CTGGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 128454798 . g gCA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 128507655 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 128554331 . A AACCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 128589235 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 128603321 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 128603797 . C G 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 128605301 . C A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 128611550 . A G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 128624513 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 128634938 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 128661405 . C A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 128665256 . T A 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 128683307 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 128698807 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 128703012 . CT CTTTTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 128712389 . T G 32 . DP=11;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=46 PL:DP:SP:GT:GQ 64,9,0:3:0:1/1:63 +chr11 128716591 . TGA TGAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 128730310 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 128775860 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 128781339 . T C 87 . DP=23;AF1=1;CI95=1,1;DP4=0,0,0,18;MQ=48 PL:DP:SP:GT:GQ 120,54,0:18:0:1/1:99 +chr11 128781855 . C T 15.1 . DP=17;AF1=0.5;CI95=0.5,0.5;DP4=0,3,3,0;MQ=49;PV4=0.1,0.0027,0.079,1 PL:DP:SP:GT:GQ 45,0,110:6:10:0/1:48 +chr11 128781902 . A G 22 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=0,6,5,0;MQ=48;PV4=0.0022,0.00072,0.025,1 PL:DP:SP:GT:GQ 52,0,162:11:27:0/1:55 +chr11 128781978 . T G 47 . DP=43;AF1=0.6671;CI95=0.5,1;DP4=2,0,6,4;MQ=47;PV4=0.52,0.14,0.25,1 PL:DP:SP:GT:GQ 76,0,3:12:3:0/1:5 +chr11 128782002 . T C 99 . DP=49;AF1=1;CI95=1,1;DP4=0,0,24,5;MQ=45 PL:DP:SP:GT:GQ 255,84,0:29:0:1/1:99 +chr11 128782012 . C G 45.3 . DP=56;AF1=1;CI95=0.5,1;DP4=0,0,5,0;MQ=43 PL:DP:SP:GT:GQ 78,15,0:5:0:1/1:75 +chr11 128782112 . C T 55 . DP=39;AF1=0.5;CI95=0.5,0.5;DP4=2,15,0,20;MQ=49;PV4=0.2,4e-14,0.036,1 PL:DP:SP:GT:GQ 85,0,255:37:7:0/1:88 +chr11 128782214 . G A 44.5 . DP=5;AF1=1;CI95=0.5,1;DP4=0,0,0,4;MQ=48 PL:DP:SP:GT:GQ 77,12,0:4:0:1/1:72 +chr11 128786294 . G A 99 . DP=25;AF1=1;CI95=1,1;DP4=0,0,21,1;MQ=44 PL:DP:SP:GT:GQ 255,66,0:22:0:1/1:99 +chr11 128786529 . GCT GCTCT 3.25 . INDEL;DP=4;AF1=0.5;CI95=0.5,0.5;DP4=1,0,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,43:2:0:0/1:40 +chr11 128789279 . C T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 128803283 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 128803908 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 128810566 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 128811422 . T C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 128813114 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 128818409 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 128839029 . G A 23 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=14,2,14,0;MQ=50;PV4=0.49,2.1e-11,0.15,1 PL:DP:SP:GT:GQ 53,0,255:30:3:0/1:56 +chr11 128843249 . T C 27 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=0,5,0,5;MQ=49;PV4=1,0.18,0.041,1 PL:DP:SP:GT:GQ 57,0,75:10:0:0/1:60 +chr11 128846547 . C A 5.79 . DP=11;AF1=0.8277;CI95=0.5,1;DP4=0,1,0,3;MQ=50;PV4=1,1,0.33,1 PL:DP:SP:GT:GQ 33,0,1:4:0:1/1:5 +chr11 128847387 . A G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 128848714 . C A 9.52 . DP=43;AF1=0.5;CI95=0.5,0.5;DP4=20,4,0,8;MQ=50;PV4=4.7e-05,9.1e-07,7.7e-07,1 PL:DP:SP:GT:GQ 39,0,255:32:43:0/1:42 +chr11 128863095 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 128868239 . T C 30.4 . DP=42;AF1=0.5554;CI95=0.5,1;DP4=0,1,1,4;MQ=49;PV4=1,0.19,0.35,1 PL:DP:SP:GT:GQ 60,0,7:6:0:0/1:10 +chr11 128874962 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 128874975 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 128891451 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 128923775 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 128931209 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 128998466 . CC CCGC 5.8 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 129033882 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 129074558 . A C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 129110068 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 129163411 . tGT t 3.25 . INDEL;DP=3;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 129184804 . C CGAG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 129185580 . T G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 129189197 . T A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 129195278 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 129238788 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 129238793 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 129243534 . A ACCATTCTGGC 9.05 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 46,3,0:1:0:1/1:41 +chr11 129296168 . C T 13.9 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=46 PL:DP:SP:GT:GQ 45,6,0:2:0:1/1:49 +chr11 129307007 . C A 26 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,4;MQ=49;PV4=1,0.036,0.22,1 PL:DP:SP:GT:GQ 56,0,43:6:0:0/1:46 +chr11 129307007 . CCA CCACA 5.08 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,2,0,1;MQ=50;PV4=1,1,1,0.19 PL:DP:SP:GT:GQ 41,0,50:3:0:0/1:43 +chr11 129309903 . A T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 129321026 . C T 99 . DP=13;AF1=1;CI95=1,1;DP4=0,0,7,2;MQ=44 PL:DP:SP:GT:GQ 193,27,0:9:0:1/1:99 +chr11 129321066 . C T 99 . DP=25;AF1=1;CI95=1,1;DP4=0,0,4,4;MQ=44 PL:DP:SP:GT:GQ 158,24,0:8:0:1/1:96 +chr11 129330225 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 129362977 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 129381595 . ggtgt gGTGTGAgtgt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 129477739 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 129499025 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 129509351 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 129532787 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 129546764 . t tGTGC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 129555018 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 129557779 . A AAGTCTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 129576018 . A T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 129577666 . aga aGAGTGAGGCTga 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 129580668 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 129594611 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 129596186 . G C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 129642514 . T G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 129695102 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 129727122 . G T 6.98 . DP=10;AF1=0.4999;CI95=0.5,0.5;DP4=3,0,3,0;MQ=48;PV4=1,0.11,0.0001,1 PL:DP:SP:GT:GQ 36,0,84:6:0:0/1:39 +chr11 129728532 . AG AGTCCTG 7.35 . INDEL;DP=6;AF1=0.5004;CI95=0.5,0.5;DP4=0,1,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,28:2:0:0/1:31 +chr11 129735052 . C A 7.8 . DP=12;AF1=0.5;CI95=0.5,0.5;DP4=0,4,0,4;MQ=49;PV4=1,0.018,0.2,1 PL:DP:SP:GT:GQ 37,0,99:8:0:0/1:40 +chr11 129738475 . C T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 129744252 . T C 6.79 . DP=23;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=49 PL:DP:SP:GT:GQ 37,6,0:2:0:1/1:49 +chr11 129753945 . G A 23 . DP=14;AF1=0.5;CI95=0.5,0.5;DP4=4,0,8,0;MQ=50;PV4=1,3.8e-12,0.16,1 PL:DP:SP:GT:GQ 53,0,124:12:0:0/1:56 +chr11 129754103 . T TG 21.3 . INDEL;DP=2;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=50 PL:DP:SP:GT:GQ 60,6,0:2:0:1/1:49 +chr11 129754644 . A G 99 . DP=21;AF1=1;CI95=1,1;DP4=0,0,5,3;MQ=46 PL:DP:SP:GT:GQ 144,24,0:8:0:1/1:96 +chr11 129754668 . T C 90 . DP=34;AF1=0.5;CI95=0.5,0.5;DP4=6,12,7,7;MQ=49;PV4=0.47,4.2e-09,0.0077,0.48 PL:DP:SP:GT:GQ 120,0,255:32:3:0/1:99 +chr11 129772172 . T C 78 . DP=28;AF1=1;CI95=1,1;DP4=0,0,22,0;MQ=48 PL:DP:SP:GT:GQ 111,66,0:22:0:1/1:99 +chr11 129785816 . AAACTAAC AAAC 72.5 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,3;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 110,0,79:6:0:0/1:82 +chr11 129787081 . C G 56 . DP=32;AF1=0.5;CI95=0.5,0.5;DP4=2,8,0,7;MQ=48;PV4=0.49,0.14,0.00017,1 PL:DP:SP:GT:GQ 86,0,196:17:3:0/1:89 +chr11 129794950 . T C 99 . DP=26;AF1=1;CI95=1,1;DP4=0,0,11,6;MQ=48 PL:DP:SP:GT:GQ 213,51,0:17:0:1/1:99 +chr11 129795061 . CA CAGA 3.25 . INDEL;DP=6;AF1=0.5;CI95=0.5,0.5;DP4=1,2,0,1;MQ=50;PV4=1,1,1,0.27 PL:DP:SP:GT:GQ 38,0,43:4:0:0/1:40 +chr11 129798731 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 129801043 . C T 3.03 . DP=43;AF1=0.5029;CI95=0.5,0.5;DP4=0,1,1,1;MQ=49;PV4=1,0.29,0.33,1 PL:DP:SP:GT:GQ 30,0,19:3:0:0/1:22 +chr11 129802018 . T C 46.2 . DP=40;AF1=1;CI95=0.5,1;DP4=0,1,1,6;MQ=49;PV4=1,1,0.21,1 PL:DP:SP:GT:GQ 78,8,0:8:0:1/1:56 +chr11 129807462 . T C 99 . DP=25;AF1=1;CI95=1,1;DP4=0,0,21,0;MQ=45 PL:DP:SP:GT:GQ 182,63,0:21:0:1/1:99 +chr11 129809936 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 129814727 . C T 4.15 . DP=23;AF1=0.5049;CI95=0.5,0.5;DP4=1,0,0,2;MQ=47;PV4=0.33,0.23,0.33,1 PL:DP:SP:GT:GQ 32,0,17:3:0:0/1:20 +chr11 129817221 . A G 99 . DP=42;AF1=1;CI95=1,1;DP4=1,0,24,10;MQ=48;PV4=1,1,0.21,1 PL:DP:SP:GT:GQ 255,85,0:35:0:1/1:99 +chr11 129830796 . C T 86 . DP=23;AF1=1;CI95=1,1;DP4=0,0,13,2;MQ=49 PL:DP:SP:GT:GQ 119,45,0:15:0:1/1:99 +chr11 129833278 . A T 7.8 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 129851930 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 129866535 . TAG TAGAGTTGAGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 129907801 . A T 13 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=49 PL:DP:SP:GT:GQ 44,6,0:2:0:1/1:49 +chr11 130007181 . A C 6.98 . DP=31;AF1=0.4999;CI95=0.5,0.5;DP4=1,13,5,0;MQ=49;PV4=0.00052,0.013,0.00013,1 PL:DP:SP:GT:GQ 36,0,226:19:33:0/1:39 +chr11 130012540 . g gGC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 130020631 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 130043460 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 130058606 . TG TGTCCGACTAG 3.25 . INDEL;DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,3,0,1;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 38,0,105:4:0:0/1:41 +chr11 130064223 . A G 17.8 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,2;MQ=46 PL:DP:SP:GT:GQ 49,6,0:2:0:1/1:49 +chr11 130064647 . G A 4.77 . DP=26;AF1=0.4999;CI95=0.5,0.5;DP4=0,2,0,2;MQ=44;PV4=1,0.17,1,1 PL:DP:SP:GT:GQ 33,0,62:4:0:0/1:36 +chr11 130066335 . C T 99 . DP=9;AF1=1;CI95=1,1;DP4=0,0,0,9;MQ=43 PL:DP:SP:GT:GQ 184,27,0:9:0:1/1:99 +chr11 130069580 . CCTC CCTCTC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 130078211 . A G 7.8 . DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 37,0,40:2:0:0/1:38 +chr11 130078535 . GCA G 5.08 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 130082775 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 130112338 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 130128566 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 130140475 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 130144427 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 130165697 . G C 77.5 . DP=32;AF1=1;CI95=0.5,1;DP4=1,0,7,2;MQ=49;PV4=1,0.35,0.23,0.4 PL:DP:SP:GT:GQ 109,7,0:10:0:1/1:57 +chr11 130178139 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 130180986 . C G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 130228803 . A G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 130242064 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 130249453 . AACG A 4.42 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 130278210 . C T 28.8 . DP=3;AF1=0.6243;CI95=0.5,1;DP4=0,1,1,1;MQ=46;PV4=1,1,0.042,1 PL:DP:SP:GT:GQ 58,0,4:3:0:0/1:6 +chr11 130281488 . G A 99 . DP=56;AF1=1;CI95=1,1;DP4=0,1,15,34;MQ=43;PV4=1,1,0.00017,1 PL:DP:SP:GT:GQ 255,125,0:50:0:1/1:99 +chr11 130286766 . G A 99 . DP=47;AF1=1;CI95=1,1;DP4=0,0,41,2;MQ=49 PL:DP:SP:GT:GQ 179,129,0:43:0:1/1:99 +chr11 130287035 . AGGG A 7.42 . INDEL;DP=6;AF1=0.5101;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,14:2:0:0/1:17 +chr11 130307972 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 130308444 . t tAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 130310402 . GA GACAATTAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 130325760 . C G 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 130333051 . T TGTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 130339193 . C G 7.25 . DP=9;AF1=0.543;CI95=0.5,1;DP4=0,1,0,2;MQ=48;PV4=1,1,0.46,0.42 PL:DP:SP:GT:GQ 36,0,8:3:0:0/1:11 +chr11 130359388 . A C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 130364235 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 130364248 . G A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 130373838 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 130395122 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 130397746 . T A 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 130417076 . G A 36 . DP=7;AF1=0.5;CI95=0.5,0.5;DP4=0,3,1,1;MQ=47;PV4=0.4,0.18,0,1 PL:DP:SP:GT:GQ 66,0,102:5:0:0/1:69 +chr11 130436678 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 130449790 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 130450627 . C A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 130512466 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 130512478 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 130523876 . A T 3.02 . DP=2;AF1=0.5005;CI95=0.5,0.5;DP4=1,0,0,1;MQ=41;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,25:2:0:0/1:27 +chr11 130581235 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 130586443 . CC CCGAC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 130587047 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 130589590 . C T 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 130598432 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 130645239 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 130688891 . C G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 130701034 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 130706276 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 130719551 . G C 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 130720814 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 130773177 . C G 11.3 . DP=19;AF1=0.5;CI95=0.5,0.5;DP4=1,5,0,4;MQ=49;PV4=1,0.062,1,1 PL:DP:SP:GT:GQ 41,0,128:10:0:0/1:44 +chr11 130774058 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 130776454 . A G 13.2 . DP=13;AF1=0.5;CI95=0.5,0.5;DP4=9,0,2,0;MQ=49;PV4=1,0.15,0,1 PL:DP:SP:GT:GQ 43,0,201:11:0:0/1:46 +chr11 130781697 . C A 34 . DP=29;AF1=0.5;CI95=0.5,0.5;DP4=2,3,0,6;MQ=48;PV4=0.18,0.49,0.028,1 PL:DP:SP:GT:GQ 64,0,73:11:7:0/1:66 +chr11 130784418 . C G 5.46 . DP=36;AF1=0.4999;CI95=0.5,0.5;DP4=13,10,0,5;MQ=48;PV4=0.044,0.022,3.9e-05,1 PL:DP:SP:GT:GQ 34,0,255:28:14:0/1:37 +chr11 130785222 . G T 6.98 . DP=6;AF1=0.4999;CI95=0.5,0.5;DP4=1,1,2,0;MQ=48;PV4=1,0.16,0.35,0.17 PL:DP:SP:GT:GQ 36,0,52:4:0:0/1:39 +chr11 130820684 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 130850756 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 130850768 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 130872843 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 130907679 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 130908792 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 130911349 . A T 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 130922553 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 130926966 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 130936502 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 130936947 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 130943272 . gt gTCTGTTCAt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 130969825 . gttt g 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 130970009 . AA AAAGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 130970133 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 130978860 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 131002736 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 131011497 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 131021765 . A G 3.02 . DP=2;AF1=0.5001;CI95=0.5,0.5;DP4=0,1,0,1;MQ=47;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,28:2:0:0/1:29 +chr11 131022606 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 131023080 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 131035359 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 131049868 . A G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 131062321 . TA TACTCACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 131065544 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 131071801 . GGGATC G 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 131081389 . T G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 131085711 . C CGT 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 131088271 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 131107674 . C G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 131159113 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 131160225 . T TCGG 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 131172986 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 131249630 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 131282170 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 131290855 . TGGCC T 7.35 . INDEL;DP=2;AF1=0.5;CI95=0.5,0.5;DP4=0,1,1,0;MQ=50;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,44:2:0:0/1:44 +chr11 131311353 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 131349510 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 131350565 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 131352045 . a aGTG 8.19 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 131355252 . G GCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 131373609 . A T 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 131412159 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 131414441 . A AGACCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 131420989 . T G 32 . DP=3;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=47 PL:DP:SP:GT:GQ 64,9,0:3:0:1/1:63 +chr11 131432879 . G T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=45 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 131445190 . AG AGTCGTGTGTTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 131462503 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 131462508 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=30 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 131462603 . A C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 131466590 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 131481546 . C T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 131495407 . A T 3.04 . DP=2;AF1=0.5048;CI95=0.5,0.5;DP4=0,1,1,0;MQ=45;PV4=1,1,1,1 PL:DP:SP:GT:GQ 30,0,17:2:0:0/1:20 +chr11 131498882 . T C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 131524082 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 131525360 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 131536114 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 131550425 . G A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=37 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 131557474 . G GGACTGTCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 131570267 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 131579003 . C T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 131604403 . a aCTGCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 131608988 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 131625498 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 131628325 . T TCACTC 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 131661730 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 131678528 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 131692138 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 131709501 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 131728121 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=33 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 131740491 . C A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 131740721 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 131773732 . G C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 131781634 . G A 19 . DP=21;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 51,9,0:3:0:1/1:63 +chr11 131799218 . gggg gGGGTggg 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 131826223 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 131852245 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 131879326 . T C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 131888020 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 131901585 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 131909573 . C CATGTA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 131919459 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 131919742 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 131929156 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 131965423 . A G 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 131998265 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 132015052 . C G 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 132025636 . T G 11.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 41,3,0:1:0:1/1:41 +chr11 132030775 . GG GGCTTTAACAAG 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 132060094 . A G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 132070269 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 132081873 . G A 54 . DP=11;AF1=0.5;CI95=0.5,0.5;DP4=6,0,5,0;MQ=48;PV4=1,0.00018,0.007,1 PL:DP:SP:GT:GQ 84,0,170:11:0:0/1:87 +chr11 132089557 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 132097935 . G A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 132144542 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=31 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 132174567 . T G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 132177740 . G T 84 . DP=31;AF1=0.5;CI95=0.5,0.5;DP4=7,4,1,14;MQ=49;PV4=0.0033,0.00078,0.024,0.47 PL:DP:SP:GT:GQ 114,0,233:26:25:0/1:99 +chr11 132183851 . G T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 132184394 . G C 66 . DP=15;AF1=0.5;CI95=0.5,0.5;DP4=7,0,8,0;MQ=48;PV4=1,1.5e-07,9e-05,1 PL:DP:SP:GT:GQ 96,0,180:15:0:0/1:99 +chr11 132196423 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 132210233 . T TTGGGGTGCC 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 132226048 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 132229854 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 132243299 . c cATCT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 132294851 . G C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 132302392 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 132311990 . G C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 132312436 . C A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 132320174 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 132321984 . T C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 132341215 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 132362861 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 132368453 . T TCGCCCTCTGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 132465651 . A C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 132475675 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 132523275 . CGCT C 7.35 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 44,3,0:1:0:1/1:41 +chr11 132528623 . C G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 132542623 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 132552879 . A C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 132603157 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 132615416 . T TCAGCGAGGAGTGGCGA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 132616255 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 132619578 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 132623858 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 132652595 . ACTT ACTTTTCTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 132692024 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 132745188 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 132747467 . A AGAG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 132778175 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 132793845 . A C 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 132830540 . G C 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 132839423 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 132848016 . G C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 132853867 . C G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=34 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 132876713 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 133042394 . A T 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 133046822 . T C 6.98 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 133062552 . g gAAAACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 133075302 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 133094148 . T TGTG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 133135673 . T TCACATAA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 133155074 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 133213810 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 133222376 . T TGAATA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 133226423 . G GTATTCA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 133234924 . C A 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 133236168 . CCTGC CC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 133237850 . T A 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 133256888 . T C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 133269469 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=41 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 133286099 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 133296056 . T TCTA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 133299878 . A C 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 133352971 . T G 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 133389368 . A T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 133394550 . G C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 133400430 . C T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 133400483 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 133425393 . C G 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 133432106 . T A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 133433522 . GC GCTC 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 133437934 . a aGCACGTTAGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 133442843 . T C 6.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 35,3,0:1:0:1/1:41 +chr11 133445440 . C A 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 133532182 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 133554523 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 133588369 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 133596659 . CG CGGGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 133598784 . C G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 133601023 . G C 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 133608945 . g gCACA 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 133609221 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=37 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 133632077 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 133656003 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 133681464 . C G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 133681849 . A T 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 133712473 . C T 20 . DP=25;AF1=0.5;CI95=0.5,0.5;DP4=0,10,0,5;MQ=49;PV4=1,2.3e-06,0.0027,1 PL:DP:SP:GT:GQ 50,0,214:15:0:0/1:53 +chr11 133714672 . A G 12.3 . DP=3;AF1=0.5;CI95=0.5,0.5;DP4=0,1,0,2;MQ=47;PV4=1,0.099,0.29,1 PL:DP:SP:GT:GQ 42,0,41:3:0:0/1:41 +chr11 133733627 . T C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 133735327 . T A 5.46 . DP=7;AF1=0.4999;CI95=0.5,0.5;DP4=1,3,1,2;MQ=38;PV4=1,0.1,0.016,0.02 PL:DP:SP:GT:GQ 34,0,117:7:0:0/1:37 +chr11 133760326 . C T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 133780082 . G C 24.8 . DP=2;AF1=1;CI95=0.5,1;DP4=0,0,1,1;MQ=42 PL:DP:SP:GT:GQ 56,6,0:2:0:1/1:49 +chr11 133783025 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 133901512 . C CAG 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 133906538 . A G 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 133911330 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 133926332 . T TGC 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 133953120 . TG TGTGGG 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 133995808 . C G 7.8 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 37,3,0:1:0:1/1:41 +chr11 134010534 . T C 3.54 . DP=17;AF1=0.4998;CI95=0.5,0.5;DP4=6,0,3,0;MQ=49;PV4=1,0.028,0.24,0.43 PL:DP:SP:GT:GQ 31,0,129:9:0:0/1:34 +chr11 134010647 . T G 15.1 . DP=15;AF1=0.5004;CI95=0.5,0.5;DP4=1,1,0,3;MQ=47;PV4=0.4,1,0.46,1 PL:DP:SP:GT:GQ 45,0,28:5:0:0/1:31 +chr11 134014673 . C CCT 89.5 . INDEL;DP=16;AF1=0.5;CI95=0.5,0.5;DP4=10,0,5,1;MQ=50;PV4=0.37,1,1,0.38 PL:DP:SP:GT:GQ 127,0,157:16:0:0/1:99 +chr11 134018656 . T C 99 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=12,8,7,8;MQ=49;PV4=0.51,1.8e-17,0.27,1 PL:DP:SP:GT:GQ 139,0,255:35:3:0/1:99 +chr11 134018980 . G A 53 . DP=16;AF1=0.5;CI95=0.5,0.5;DP4=7,0,9,0;MQ=49;PV4=1,5.8e-11,0.017,1 PL:DP:SP:GT:GQ 83,0,180:16:0:0/1:86 +chr11 134031836 . CA CAAA 12.7 . INDEL;DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 134032506 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 134035051 . A T 4.13 . DP=2;AF1=0.5001;CI95=0.5,0.5;DP4=0,1,1,0;MQ=46;PV4=1,1,1,1 PL:DP:SP:GT:GQ 32,0,30:2:0:0/1:31 +chr11 134046907 . T A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 134047838 . G C 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 134048888 . C A 3.54 . DP=4;AF1=0.4998;CI95=0.5,0.5;DP4=0,2,0,1;MQ=47;PV4=1,1,0.029,0.02 PL:DP:SP:GT:GQ 31,0,39:3:0:0/1:33 +chr11 134056092 . G A 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=36 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 134064412 . G C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 134064527 . TTAAAAAAAAAAAT TCGTAAAAAAAAAAAT 7.35 . INDEL;DP=11;AF1=0.5;CI95=0.5,0.5;DP4=1,0,1,0;MQ=48;PV4=1,1,1,1 PL:DP:SP:GT:GQ 44,0,37:2:0:0/1:39 +chr11 134067603 . A C 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 134081792 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 134097472 . G A 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 134120104 . TC TCGTGAC 8.19 . INDEL;DP=8;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 45,3,0:1:0:1/1:41 +chr11 134152030 . G A 18 . DP=8;AF1=1;CI95=0.5,1;DP4=0,0,0,3;MQ=49 PL:DP:SP:GT:GQ 50,9,0:3:0:1/1:63 +chr11 134154092 . AT ATGTT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 134158384 . T G 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 134211029 . A C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 134226278 . C T 59 . DP=37;AF1=0.5;CI95=0.5,0.5;DP4=2,16,1,14;MQ=49;PV4=1,1.6e-09,5.4e-06,1 PL:DP:SP:GT:GQ 89,0,255:33:0:0/1:92 +chr11 134230133 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=46 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 134234413 . C A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 134237113 . C A 4.13 . DP=17;AF1=0.4998;CI95=0.5,0.5;DP4=6,0,5,0;MQ=50;PV4=1,1.6e-05,0.15,1 PL:DP:SP:GT:GQ 32,0,165:11:0:0/1:35 +chr11 134251777 . C A 33.3 . DP=23;AF1=0.543;CI95=0.5,1;DP4=1,0,10,0;MQ=50;PV4=1,0.00013,0.32,0.39 PL:DP:SP:GT:GQ 63,0,8:11:0:0/1:11 +chr11 134279356 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 134297991 . T A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 134317102 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 134325175 . G A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 134341898 . GGT GGTGT 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 134359842 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 134371792 . T C 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 134384141 . G C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=40 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 134386772 . A C 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 134391945 . G A 3.02 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 134392155 . A T 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 134404662 . c cTAA 9.94 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 47,3,0:1:0:1/1:41 +chr11 134429601 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 134468318 . T A 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 134478998 . AA AATAGCA 3.25 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 134483554 . A G 10.4 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 134485800 . G C 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=39 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 134493164 . A G 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=36 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 134517762 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 134521397 . T A 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 134547336 . A T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=35 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 134560146 . C A 9.53 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 39,3,0:1:0:1/1:41 +chr11 134569383 . T A 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=41 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 134615325 . A T 4.77 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=35 PL:DP:SP:GT:GQ 33,3,0:1:0:1/1:41 +chr11 134633468 . A T 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 134645286 . ct cTATt 12.7 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 50,3,0:1:0:1/1:41 +chr11 134682259 . C T 4.13 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=43 PL:DP:SP:GT:GQ 32,3,0:1:0:1/1:41 +chr11 134685324 . G T 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=44 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 134707657 . T A 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 134727740 . C G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 134747997 . GTTA G 6.56 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=50 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11 134752848 . T G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 134770250 . A G 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=45 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 134775601 . G T 3.02 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=40 PL:DP:SP:GT:GQ 30,3,0:1:0:1/1:41 +chr11 134782728 . T G 6.98 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 36,3,0:1:0:1/1:41 +chr11 134802294 . G C 3.55 . DP=2;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=44 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 134834091 . T C 5.46 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=38 PL:DP:SP:GT:GQ 34,3,0:1:0:1/1:41 +chr11 134837938 . C G 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 134839555 . G C 12.3 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=42 PL:DP:SP:GT:GQ 42,3,0:1:0:1/1:41 +chr11 134909273 . A T 8.65 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=38 PL:DP:SP:GT:GQ 38,3,0:1:0:1/1:41 +chr11 134912827 . T C 3.55 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,1,0;MQ=39 PL:DP:SP:GT:GQ 31,3,0:1:0:1/1:41 +chr11 134922620 . t tCA 4.42 . INDEL;DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=50 PL:DP:SP:GT:GQ 40,3,0:1:0:1/1:41 +chr11 134924768 . C A 13.2 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=43 PL:DP:SP:GT:GQ 43,3,0:1:0:1/1:41 +chr11_gl000202_random 7708 . G T 29 . DP=1;AF1=0.9999;CI95=0.5,1;DP4=0,0,0,1;MQ=60 PL:DP:SP:GT:GQ 59,3,0:1:0:1/1:41