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comparison variant_select.xml @ 1:227aa321a671 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gatk/variant_select commit a1517c9d22029095120643bbe2c8fa53754dd2b7
author devteam
date Wed, 11 Nov 2015 12:46:41 -0500
parents 135e8721ffc5
children
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0:135e8721ffc5 1:227aa321a671
1 <tool id="gatk_variant_select" name="Select Variants" version="0.0.2"> 1 <tool id="gatk_variant_select" name="Select Variants" version="0.0.3">
2 <description>from VCF files</description> 2 <description>from VCF files</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.4">gatk</requirement> 4 <requirement type="package" version="1.4">gatk</requirement>
5 </requirements> 5 </requirements>
6 <macros> 6 <macros>
152 152
153 <repeat name="sample_file_repeat" title="Samples by file" help="-sf,--sample_file &amp;lt;sample_file&amp;gt;"> 153 <repeat name="sample_file_repeat" title="Samples by file" help="-sf,--sample_file &amp;lt;sample_file&amp;gt;">
154 <param name="sample_file" type="data" format="txt" label="File containing a list of samples (one per line) to include" /> 154 <param name="sample_file" type="data" format="txt" label="File containing a list of samples (one per line) to include" />
155 </repeat> 155 </repeat>
156 156
157 <param name="input_keep_ids" type="data" format="text" label="Only emit sites whose ID is found in this file" optional="True" help="-IDs,--keepIDs &amp;lt;keepIDs&amp;gt;"/> 157 <param name="input_keep_ids" type="data" format="txt" label="Only emit sites whose ID is found in this file" optional="True" help="-IDs,--keepIDs &amp;lt;keepIDs&amp;gt;"/>
158 158
159 <param name="keep_original_AC" type="boolean" truevalue="--keepOriginalAC" falsevalue="" label="Don't update the AC, AF, or AN values in the INFO field after selecting" help="-keepOriginalAC,--keepOriginalAC" /> 159 <param name="keep_original_AC" type="boolean" truevalue="--keepOriginalAC" falsevalue="" label="Don't update the AC, AF, or AN values in the INFO field after selecting" help="-keepOriginalAC,--keepOriginalAC" />
160 160
161 <param name="mendelian_violation" type="boolean" truevalue="--mendelianViolation" falsevalue="" label="output mendelian violation sites only" help="-mv,--mendelianViolation" /> 161 <param name="mendelian_violation" type="boolean" truevalue="--mendelianViolation" falsevalue="" label="output mendelian violation sites only" help="-mv,--mendelianViolation" />
162 162