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changeset 1:196ed76d2619 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfaddinfo commit 0b9b6512272b82637c2f1e831367e89aed77ae79
author devteam
date Thu, 15 Sep 2016 16:06:46 -0400
parents 4d4b16af67aa
children afc0ba768690
files macros.xml tool_dependencies.xml vcfaddinfo.xml
diffstat 3 files changed, 34 insertions(+), 39 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Thu Mar 19 12:21:38 2015 -0400
+++ b/macros.xml	Thu Sep 15 16:06:46 2016 -0400
@@ -1,7 +1,7 @@
 <macros>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="8a5602bf07">vcflib</requirement>
+            <requirement type="package" version="1.0.0_rc1">vcflib</requirement>
             <yield/>
         </requirements>
     </xml>
@@ -10,6 +10,7 @@
             <exit_code range="1:" level="fatal" />
         </stdio>
     </xml>
+   <token name="@WRAPPER_VERSION@">1.0.0_rc1</token>
    	<xml name="citations">
    	     <citations>
              <citation type="bibtex">
--- a/tool_dependencies.xml	Thu Mar 19 12:21:38 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,6 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="vcflib" version="8a5602bf07">
-        <repository changeset_revision="7e67466b033e" name="package_vcflib_8a5602bf07" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-    </package>
-</tool_dependency>
--- a/vcfaddinfo.xml	Thu Mar 19 12:21:38 2015 -0400
+++ b/vcfaddinfo.xml	Thu Sep 15 16:06:46 2016 -0400
@@ -1,32 +1,32 @@
-<tool id="vcfaddinfo" name="VCFaddinfo:" version="0.0.3">
-  <description>Adds info fields from the second dataset which are not present in the first dataset</description>
-  <macros>
-    <import>macros.xml</import>
-  </macros>
-  <expand macro="requirements"></expand>
-  <expand macro="stdio" />
-  <command>vcfaddinfo "${input1}" "${input2}" > "${out_file1}"</command>
-  <inputs>
-    <param format="vcf" name="input1" type="data" label="Add INFO fields to" help="First VCF dataset"/>
-    <param format="vcf" name="input2" type="data" label="using INFO fields from" help="Second VCF dataset"/>
-  </inputs>
-  <outputs>
-    <data format="vcf" name="out_file1" />
-  </outputs>
- <tests>
-    <test>
-      <param name="input1" value="vcfaddinfo-input1.vcf"/>
-      <param name="input2" value="vcflib.vcf"/>
-      <output name="out_file1" file="vcfaddinfo-test1.vcf" />
-    </test>
-    </tests>
-<help>
-
-Adds info fields from the second dataset which are not present in the first dataset.
-
------
-
-Vcfaddinfo @IS_PART_OF_VCFLIB@
-</help>
-  <expand macro="citations" />
-</tool>
+<tool id="vcfaddinfo" name="VCFaddinfo:" version="@WRAPPER_VERSION@.0">
+  <description>Adds info fields from the second dataset which are not present in the first dataset</description>
+  <macros>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="requirements"></expand>
+  <expand macro="stdio" />
+  <command>vcfaddinfo "${input1}" "${input2}" > "${out_file1}"</command>
+  <inputs>
+    <param format="vcf" name="input1" type="data" label="Add INFO fields to" help="First VCF dataset"/>
+    <param format="vcf" name="input2" type="data" label="using INFO fields from" help="Second VCF dataset"/>
+  </inputs>
+  <outputs>
+    <data format="vcf" name="out_file1" />
+  </outputs>
+ <tests>
+    <test>
+      <param name="input1" value="vcfaddinfo-input1.vcf"/>
+      <param name="input2" value="vcflib.vcf"/>
+      <output name="out_file1" file="vcfaddinfo-test1.vcf" />
+    </test>
+    </tests>
+<help>
+
+Adds info fields from the second dataset which are not present in the first dataset.
+
+-----
+
+Vcfaddinfo @IS_PART_OF_VCFLIB@
+</help>
+  <expand macro="citations" />
+</tool>