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comparison vcfannotate.xml @ 1:829d46588cf5 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfannotate commit a1517c9d22029095120643bbe2c8fa53754dd2b7
author devteam
date Wed, 11 Nov 2015 12:57:42 -0500
parents 87d916fbb7c4
children d64204113938
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0:87d916fbb7c4 1:829d46588cf5
7 <expand macro="stdio" /> 7 <expand macro="stdio" />
8 <command>vcfannotate --key "${key_option}" -b "${bed_data}" "${input}" > "${out_file1}"</command> 8 <command>vcfannotate --key "${key_option}" -b "${bed_data}" "${input}" > "${out_file1}"</command>
9 <inputs> 9 <inputs>
10 <param format="vcf" name="input" type="data" label="Select VCF dataset"/> 10 <param format="vcf" name="input" type="data" label="Select VCF dataset"/>
11 <param name="bed_data" type="data" format="bed" label="Select BED dataset to itersect with"/> 11 <param name="bed_data" type="data" format="bed" label="Select BED dataset to itersect with"/>
12 <param name="key_option" size="20" type="text" value="BED-features" label="Intersecting VCF records will be prefixed with this TAG within the INFO field" help="--key option"/> 12 <param name="key_option" type="text" value="BED-features" label="Intersecting VCF records will be prefixed with this TAG within the INFO field" help="--key option"/>
13 </inputs> 13 </inputs>
14 <outputs> 14 <outputs>
15 <data format="vcf" name="out_file1" /> 15 <data format="vcf" name="out_file1" />
16 </outputs> 16 </outputs>
17 <tests> 17 <tests>