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comparison vcfannotate.xml @ 4:01e0321aca98 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfannotate commit 36e9065027cc7bf721e9d203208477ee88906c57"
author iuc
date Thu, 23 Jan 2020 08:03:53 -0500
parents 6faa2c4c71d2
children
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3:6faa2c4c71d2 4:01e0321aca98
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"/> 6 <expand macro="requirements"/>
7 <expand macro="stdio" /> 7 <expand macro="stdio" />
8 <command>vcfannotate --key "${key_option}" -b "${bed_data}" "${input}" > "${out_file1}"</command> 8 <command>vcfannotate --key '${key_option}' -b '${bed_data}' '${input}' > '${out_file1}'</command>
9 <inputs> 9 <inputs>
10 <param format="vcf" name="input" type="data" label="Select VCF dataset"/> 10 <param format="vcf" name="input" type="data" label="Select VCF dataset"/>
11 <param name="bed_data" type="data" format="bed" label="Select BED dataset to itersect with"/> 11 <param name="bed_data" type="data" format="bed" label="Select BED dataset to itersect with"/>
12 <param name="key_option" type="text" value="BED-features" label="Intersecting VCF records will be prefixed with this TAG within the INFO field" help="--key option"/> 12 <param name="key_option" type="text" value="BED-features" label="Intersecting VCF records will be prefixed with this TAG within the INFO field" help="--key option"/>
13 </inputs> 13 </inputs>