Mercurial > repos > devteam > vcfannotategenotypes

diff test-data/vcfannotategenotypes-test1.vcf @ 2:c96a7e49150a draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfannotategenotypes commit 0b9b6512272b82637c2f1e831367e89aed77ae79
author devteam
date Thu, 15 Sep 2016 16:07:50 -0400
parents c6be83b8883d
children 84959112d9a6
line wrap: on
line diff
--- a/test-data/vcfannotategenotypes-test1.vcf	Wed Nov 11 12:57:55 2015 -0500
+++ b/test-data/vcfannotategenotypes-test1.vcf	Thu Sep 15 16:07:50 2016 -0400
@@ -29,5 +29,5 @@
 20	1110696	rs6040355	A	G,T	67	PASS	AA=T;AF=0.333,0.667;DP=10;NS=2;DB;added-genotypes.has_variant	GT:GQ:DP:HQ:added-genotypes	1|2:21:6:23,27:1/2	2|1:2:0:18,2:./.	2/2:35:4:.,.:2/2
 20	1230237	.	T	.	47	PASS	AA=T;DP=13;NS=3;added-genotypes.has_variant	GT:GQ:DP:HQ:added-genotypes	0|0:54:.:56,60:0/0	0|0:48:4:51,51:./.	0/0:61:2:.,.:0/0
 20	1234567	microsat1	G	GA,GAC	50	PASS	AA=G;AC=3,1;AN=6;DP=9;NS=3;added-genotypes.has_variant	GT:GQ:DP:added-genotypes	0/1:.:4:0/1	0/2:17:2:./.	1/1:40:3:1/1
-20	1235237	.	T	.	0	.	added-genotypes.has_variant	GT:added-genotypes	0/0:0/0	0|0:./.	.
+20	1235237	.	T	.	0	.	added-genotypes.has_variant	GT:added-genotypes	0/0:0/0	0|0:./.	./.:.
 X	10	rsTest	AC	A,ATG	10	PASS	added-genotypes.has_variant	GT:added-genotypes	0:0	0/1:./.	0|2:0/2