Mercurial > repos > devteam > vcfbedintersect

comparison vcfbedintersect.xml @ 4:aea8e90ad788 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfbedintersect commit 36e9065027cc7bf721e9d203208477ee88906c57"
author iuc
date Thu, 23 Jan 2020 08:05:00 -0500
parents 9edfe5145ba8
children
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3:9edfe5145ba8 4:aea8e90ad788
5 </macros> 5 </macros>
6 <expand macro="requirements"/> 6 <expand macro="requirements"/>
7 <expand macro="stdio" /> 7 <expand macro="stdio" />
8 <command> 8 <command>
9 #if str($bed_vs_interval.bed_vs_interval_selector) == "bed": 9 #if str($bed_vs_interval.bed_vs_interval_selector) == "bed":
10 vcfintersect -b "${bed_vs_interval.bed_input}" ${invert} "${vcf_input}" > "${out_file1}" 10 vcfintersect -b '${bed_vs_interval.bed_input}' ${invert} '${vcf_input}' > '${out_file1}'
11 #else: 11 #else:
12 vcfintersect -R "${bed_vs_interval.int_input}" ${invert} "${vcf_input}" > "${out_file1}" 12 vcfintersect -R '${bed_vs_interval.int_input}' ${invert} '${vcf_input}' > '${out_file1}'
13 #end if 13 #end if
14 </command> 14 </command>
15 <inputs> 15 <inputs>
16 <!-- selecting refernce source --> 16 <!-- selecting refernce source -->
17 <param name="vcf_input" type="data" format="vcf" label="Select VCF dataset" /> 17 <param name="vcf_input" type="data" format="vcf" label="Select VCF dataset" />