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comparison vcfcombine.xml @ 1:55ca04702702 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfcombine commit a1517c9d22029095120643bbe2c8fa53754dd2b7
author devteam
date Wed, 11 Nov 2015 12:58:45 -0500
parents da419f5ed589
children 18f9f2624bd6
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0:da419f5ed589 1:55ca04702702
1 <tool id="vcfcombine" name="VCFcombine:" version="0.0.3"> 1 <tool id="vcfcombine" name="VCFcombine:" version="0.0.4">
2 <description>Combine multiple VCF datasets</description> 2 <description>Combine multiple VCF datasets</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"></expand> 6 <expand macro="requirements"></expand>
7 <expand macro="stdio" /> 7 <expand macro="stdio" />
8 <command> 8 <command>
9 9
10 vcfcombine 10 vcfcombine
11 11
12 #for $input_vcf in $input_vcfs: 12 #for $input_vcf in $input_vcfs:
13 "${input_vcf.input_vcf}" 13 "${input_vcf}"
14 #end for 14 #end for
15 15
16 > "${out_file1}" 16 > "${out_file1}"
17 17
18 </command> 18 </command>
19 <inputs> 19 <inputs>
20 <repeat name="input_vcfs" title="Select VCF dataset" min="2" > 20 <param name="input_vcfs" type="data" format="vcf" label="Select VCF Datasets" min="2" multiple="True"/>
21 <param name="input_vcf" type="data" format="vcf" label="Dataset"/>
22 </repeat>
23 </inputs> 21 </inputs>
24 <outputs> 22 <outputs>
25 <data format="vcf" name="out_file1" /> 23 <data format="vcf" name="out_file1" />
26 </outputs> 24 </outputs>
27 <tests> 25 <tests>
28 <test> 26 <test>
29 <param name="input_vcf" value="vcflib.vcf"/> 27 <param name="input_vcfs" value="vcflib.vcf"/>
30 <output name="out_file1" file="vcfcombine-test1.vcf"/> 28 <output name="out_file1" file="vcfcombine-test1.vcf"/>
31 </test> 29 </test>
32 </tests> 30 </tests>
33 <help> 31 <help>
34 32