Mercurial > repos > devteam > vcfcommonsamples
comparison vcfcommonsamples.xml @ 0:202ff1d8c57f draft
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| author | devteam |
|---|---|
| date | Thu, 19 Mar 2015 14:25:17 -0400 |
| parents | |
| children | f27d6187d808 |
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| -1:000000000000 | 0:202ff1d8c57f |
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| 1 <tool id="vcfcommonsamples" name="VCFcommonSamples:" version="0.0.3"> | |
| 2 <description>Output records belonging to samples commong between two datasets</description> | |
| 3 <macros> | |
| 4 <import>macros.xml</import> | |
| 5 </macros> | |
| 6 <expand macro="requirements"></expand> | |
| 7 <expand macro="stdio" /> | |
| 8 <command>vcfcommonsamples "${input1}" "${input2}" > "${out_file1}"</command> | |
| 9 <inputs> | |
| 10 <param format="vcf" name="input1" type="data" label="First dataset"/> | |
| 11 <param format="vcf" name="input2" type="data" label="Second dataset"/> | |
| 12 </inputs> | |
| 13 <outputs> | |
| 14 <data format="vcf" name="out_file1" /> | |
| 15 </outputs> | |
| 16 <tests> | |
| 17 <test> | |
| 18 <param name="input1" value="vcflib.vcf"/> | |
| 19 <param name="input2" value="vcfcommonsamples-test1-input2.vcf"/> | |
| 20 <output name="out_file1" file="vcfcommonsamples-test1.vcf"/> | |
| 21 </test> | |
| 22 </tests> | |
| 23 <help> | |
| 24 | |
| 25 Outputs each record in the first file, removing samples not present in the second. | |
| 26 | |
| 27 ---- | |
| 28 | |
| 29 Vcfcommonsamples @IS_PART_OF_VCFLIB@ | |
| 30 </help> | |
| 31 <expand macro="citations" /> | |
| 32 </tool> |