Mercurial > repos > devteam > vcffixup

comparison test-data/vcffixup-test1.vcf @ 1:9d7e64e4b9fc draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcffixup commit 0b9b6512272b82637c2f1e831367e89aed77ae79
author devteam
date Thu, 15 Sep 2016 16:05:59 -0400
parents a03f346b6aae
children
comparison
equal deleted inserted replaced
0:a03f346b6aae 1:9d7e64e4b9fc
25 20 14370 rs6054257 G A 29 PASS AC=3;AF=0.5;AN=6;DP=14;NS=3;DB;H2 GT:GQ:DP:HQ 0|0:48:1:51,51 1|0:48:8:51,51 1/1:43:5:.,. 25 20 14370 rs6054257 G A 29 PASS AC=3;AF=0.5;AN=6;DP=14;NS=3;DB;H2 GT:GQ:DP:HQ 0|0:48:1:51,51 1|0:48:8:51,51 1/1:43:5:.,.
26 20 17330 . T A 3 q10 AC=1;AF=0.166667;AN=6;DP=11;NS=3 GT:GQ:DP:HQ 0|0:49:3:58,50 0|1:3:5:65,3 0/0:41:3:.,. 26 20 17330 . T A 3 q10 AC=1;AF=0.166667;AN=6;DP=11;NS=3 GT:GQ:DP:HQ 0|0:49:3:58,50 0|1:3:5:65,3 0/0:41:3:.,.
27 20 1110696 rs6040355 A G,T 67 PASS AA=T;AC=2,4;AF=0.333333,0.666667;AN=6;DP=10;NS=3;DB GT:GQ:DP:HQ 1|2:21:6:23,27 2|1:2:0:18,2 2/2:35:4:.,. 27 20 1110696 rs6040355 A G,T 67 PASS AA=T;AC=2,4;AF=0.333333,0.666667;AN=6;DP=10;NS=3;DB GT:GQ:DP:HQ 1|2:21:6:23,27 2|1:2:0:18,2 2/2:35:4:.,.
28 20 1230237 . T . 47 PASS AA=T;AC=0;AF=0;AN=6;DP=13;NS=3 GT:GQ:DP:HQ 0|0:54:.:56,60 0|0:48:4:51,51 0/0:61:2:.,. 28 20 1230237 . T . 47 PASS AA=T;AC=0;AF=0;AN=6;DP=13;NS=3 GT:GQ:DP:HQ 0|0:54:.:56,60 0|0:48:4:51,51 0/0:61:2:.,.
29 20 1234567 microsat1 G GA,GAC 50 PASS AA=G;AC=3,1;AF=0.5,0.166667;AN=6;DP=9;NS=3 GT:GQ:DP 0/1:.:4 0/2:17:2 1/1:40:3 29 20 1234567 microsat1 G GA,GAC 50 PASS AA=G;AC=3,1;AF=0.5,0.166667;AN=6;DP=9;NS=3 GT:GQ:DP 0/1:.:4 0/2:17:2 1/1:40:3
30 20 1235237 . T . 0 . AC=0;AF=0;AN=4;NS=2 GT 0/0 0|0 . 30 20 1235237 . T . 0 . AC=0;AF=0;AN=4;NS=3 GT 0/0 0|0 ./.
31 X 10 rsTest AC A,ATG 10 PASS AC=1,1;AF=0.2,0.2;AN=5;NS=3 GT 0 0/1 0|2 31 X 10 rsTest AC A,ATG 10 PASS AC=1,1;AF=0.2,0.2;AN=5;NS=3 GT 0 0/1 0|2