Mercurial > repos > devteam > vcffixup
diff vcffixup.xml @ 1:9d7e64e4b9fc draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcffixup commit 0b9b6512272b82637c2f1e831367e89aed77ae79
| author | devteam |
|---|---|
| date | Thu, 15 Sep 2016 16:05:59 -0400 |
| parents | a03f346b6aae |
| children | fc5a64fdd5b2 |
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--- a/vcffixup.xml Thu Mar 19 14:30:34 2015 -0400 +++ b/vcffixup.xml Thu Sep 15 16:05:59 2016 -0400 @@ -1,30 +1,30 @@ -<tool id="vcffixup" name="VCFfixup:" version="0.0.3"> - <description>Count the allele frequencies across alleles present in each record in the VCF file</description> - <macros> - <import>macros.xml</import> - </macros> - <expand macro="requirements"></expand> - <expand macro="stdio" /> - <command>vcffixup "${input1}" > "${out_file1}"</command> - <inputs> - <param format="vcf" name="input1" type="data" label="Select VCF dataset"/> - </inputs> - <outputs> - <data format="vcf" name="out_file1" /> - </outputs> - <tests> - <test> - <param name="input1" value="vcflib.vcf"/> - <output name="out_file1" file="vcffixup-test1.vcf"/> - </test> - </tests> - <help> - -Uses genotypes from the selected VCF dataset to correct AC (alternate allele count), AF (alternate allele frequency), NS (number of called), in the VCF records. - ----- - -Vcffixup @IS_PART_OF_VCFLIB@ -</help> - <expand macro="citations" /> -</tool> +<tool id="vcffixup" name="VCFfixup:" version="@WRAPPER_VERSION@.0"> + <description>Count the allele frequencies across alleles present in each record in the VCF file</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements"/> + <expand macro="stdio" /> + <command>vcffixup "${input1}" > "${out_file1}"</command> + <inputs> + <param format="vcf" name="input1" type="data" label="Select VCF dataset"/> + </inputs> + <outputs> + <data format="vcf" name="out_file1" /> + </outputs> + <tests> + <test> + <param name="input1" value="vcflib.vcf"/> + <output name="out_file1" file="vcffixup-test1.vcf"/> + </test> + </tests> + <help> + +Uses genotypes from the selected VCF dataset to correct AC (alternate allele count), AF (alternate allele frequency), NS (number of called), in the VCF records. + +---- + +Vcffixup @IS_PART_OF_VCFLIB@ +</help> + <expand macro="citations" /> +</tool>