# HG changeset patch
# User devteam
# Date 1473969976 14400
# Node ID 1336a70f5c02bf1d792033978fcb762b36e8100d
# Parent  38d93ca9c0f05cca150b40393af444223ce3de87
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfflatten commit 0b9b6512272b82637c2f1e831367e89aed77ae79

diff -r 38d93ca9c0f0 -r 1336a70f5c02 macros.xml
--- a/macros.xml	Thu Mar 19 14:31:30 2015 -0400
+++ b/macros.xml	Thu Sep 15 16:06:16 2016 -0400
@@ -1,7 +1,7 @@
 <macros>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="8a5602bf07">vcflib</requirement>
+            <requirement type="package" version="1.0.0_rc1">vcflib</requirement>
             <yield/>
         </requirements>
     </xml>
@@ -10,6 +10,7 @@
             <exit_code range="1:" level="fatal" />
         </stdio>
     </xml>
+   <token name="@WRAPPER_VERSION@">1.0.0_rc1</token>
    	<xml name="citations">
    	     <citations>
              <citation type="bibtex">
diff -r 38d93ca9c0f0 -r 1336a70f5c02 tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Mar 19 14:31:30 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,6 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="vcflib" version="8a5602bf07">
-        <repository changeset_revision="7e67466b033e" name="package_vcflib_8a5602bf07" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-    </package>
-</tool_dependency>
diff -r 38d93ca9c0f0 -r 1336a70f5c02 vcfflatten.xml
--- a/vcfflatten.xml	Thu Mar 19 14:31:30 2015 -0400
+++ b/vcfflatten.xml	Thu Sep 15 16:06:16 2016 -0400
@@ -1,30 +1,30 @@
-<tool id="vcfflatten2" name="VCFflatten:" version="0.0.3">
-  <description>Removes multi-allelic sites by picking the most common alternate</description>
-  <macros>
-    <import>macros.xml</import>
-  </macros>
-  <expand macro="requirements"></expand>
-  <expand macro="stdio" />
-  <command>vcfflatten "${input1}" > "${out_file1}"</command>
-  <inputs>
-    <param format="vcf" name="input1" type="data" label="Select VCF dataset"/>
-  </inputs>
-  <outputs>
-    <data format="vcf" name="out_file1" />
-  </outputs>
-  <tests>
-    <test>
-      <param name="input1" value="vcfflatten-input1.vcf"/>
-      <output name="out_file1" file="vcfflatten-test1.vcf"/>
-    </test>
-    </tests>
-  <help>
-
-Removes multi-allelic sites by picking the most common alternate.  Requires allele frequency specification 'AF' and use of 'G' and 'A' to specify the fields which vary according to the Allele or Genotype.
-
-----
-
-Vcfflatten @IS_PART_OF_VCFLIB@
-</help>
-  <expand macro="citations" />
-</tool>
+<tool id="vcfflatten2" name="VCFflatten:" version="@WRAPPER_VERSION@.0">
+  <description>Removes multi-allelic sites by picking the most common alternate</description>
+  <macros>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="requirements"/>
+  <expand macro="stdio" />
+  <command>vcfflatten "${input1}" > "${out_file1}"</command>
+  <inputs>
+    <param format="vcf" name="input1" type="data" label="Select VCF dataset"/>
+  </inputs>
+  <outputs>
+    <data format="vcf" name="out_file1" />
+  </outputs>
+  <tests>
+    <test>
+      <param name="input1" value="vcfflatten-input1.vcf"/>
+      <output name="out_file1" file="vcfflatten-test1.vcf"/>
+    </test>
+    </tests>
+  <help>
+
+Removes multi-allelic sites by picking the most common alternate.  Requires allele frequency specification 'AF' and use of 'G' and 'A' to specify the fields which vary according to the Allele or Genotype.
+
+----
+
+Vcfflatten @IS_PART_OF_VCFLIB@
+</help>
+  <expand macro="citations" />
+</tool>