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comparison vcfleftalign.xml @ 2:8e02d116b0f9 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfleftalign commit 0b9b6512272b82637c2f1e831367e89aed77ae79
author devteam
date Thu, 15 Sep 2016 16:06:01 -0400
parents 3e3d0dffeb1f
children d2406f98a782
comparison
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1:4dba4b988d0a 2:8e02d116b0f9
1 <tool id="vcfleftalign" name="VCFleftAlign:" version="0.0.3"> 1 <tool id="vcfleftalign" name="VCFleftAlign:" version="@WRAPPER_VERSION@.0">
2 <description>Left-align indels and complex variants in VCF dataset</description> 2 <description>Left-align indels and complex variants in VCF dataset</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"></expand> 6 <expand macro="requirements"/>
7 <expand macro="stdio"></expand> 7 <expand macro="stdio" />
8 <command> 8 <command>
9 #set $reference_fasta_filename = "localref.fa" 9 #set $reference_fasta_filename = "localref.fa"
10 #if str( $reference_source.reference_source_selector ) == "history": 10 #if str( $reference_source.reference_source_selector ) == "history":
11 ln -s "${reference_source.ref_file}" "${reference_fasta_filename}" &amp;&amp; 11 ln -s "${reference_source.ref_file}" "${reference_fasta_filename}" &amp;&amp;
12 #else: 12 #else: