Mercurial > repos > devteam > vcfrandomsample

comparison vcfrandomsample.xml @ 2:12b570dd0bc5 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfrandomsample commit c2af291b241e37e0a55adbc1fc72a9fa37d93582
author iuc
date Mon, 26 Mar 2018 12:28:36 -0400
parents c035d96c5cbe
children 6257ee3b50d3
comparison
equal deleted inserted replaced
1:c035d96c5cbe 2:12b570dd0bc5
1 <tool id="vcfrandomsample" name="VCFrandomSample:" version="@WRAPPER_VERSION@.0"> 1 <tool id="vcfrandomsample" name="VCFrandomSample:" version="@WRAPPER_VERSION@+galaxy0">
2 <description>Randomly sample sites from VCF dataset</description> 2 <description>Randomly sample sites from VCF dataset</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"/> 6 <expand macro="requirements"/>
22 <conditional name="adv_options"> 22 <conditional name="adv_options">
23 <param name="adv_options_selector" type="select" label="Advanced controls" help="Allows you to specify options that are not listed above"> 23 <param name="adv_options_selector" type="select" label="Advanced controls" help="Allows you to specify options that are not listed above">
24 <option value="no">Don't use advanced options</option> 24 <option value="no">Don't use advanced options</option>
25 <option value="use_adv_controls">Use advanced options</option> 25 <option value="use_adv_controls">Use advanced options</option>
26 </param> 26 </param>
27 <when value="" /> 27 <when value="no" />
28 <when value="use_adv_controls"> 28 <when value="use_adv_controls">
29 <param name="scale_by" type="text" value="AF" label="scale sampling likelihood by this INFO field" help="-s, --scale-by; this only works for Float info fields such as AF" /> 29 <param name="scale_by" type="text" value="AF" label="scale sampling likelihood by this INFO field" help="-s, --scale-by; this only works for Float info fields such as AF" />
30 </when> 30 </when>
31 </conditional> 31 </conditional>
32 </inputs> 32 </inputs>
41 <param name="adv_options_selector" value="no" /> 41 <param name="adv_options_selector" value="no" />
42 <output name="out_file1" file="vcfrandomsample-test1.vcf" lines_diff="2" /> 42 <output name="out_file1" file="vcfrandomsample-test1.vcf" lines_diff="2" />
43 </test> 43 </test>
44 </tests> 44 </tests>
45 <help> 45 <help>
46
47 Randomly sample sites from an input VCF dataset. Scale the sampling probability by the field specified by --scale-by (see advanced controls). This may be 46 Randomly sample sites from an input VCF dataset. Scale the sampling probability by the field specified by --scale-by (see advanced controls). This may be
48 used to provide uniform sampling across allele frequencies, for instance (AF field in this case). 47 used to provide uniform sampling across allele frequencies, for instance (AF field in this case).
49 48
50 ---- 49 ----
51 50