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comparison vcfselectsamples.xml @ 1:43cecdfe7107 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfselectsamples commit 0b9b6512272b82637c2f1e831367e89aed77ae79
author devteam
date Thu, 15 Sep 2016 16:07:06 -0400
parents 88fd8ef7e4af
children 958b6484a7f1
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0:88fd8ef7e4af 1:43cecdfe7107
1 <tool id="vcfselectsamples" name="VCFselectsamples:" version="0.0.3"> 1 <tool id="vcfselectsamples" name="VCFselectsamples:" version="@WRAPPER_VERSION@.0">
2 <description>Select samples from a VCF dataset</description> 2 <description>Select samples from a VCF dataset</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"></expand> 6 <expand macro="requirements"/>
7 <expand macro="stdio" /> 7 <expand macro="stdio" />
8 <command>vcfkeepsamples "${input1}" ${ ' '.join( map( lambda x:'"%s"' % ( x ), str($vcf_samples ).split(",") ) ) } > "${out_file1}"</command> 8 <command>vcfkeepsamples "${input1}" ${ ' '.join( map( lambda x:'"%s"' % ( x ), str($vcf_samples ).split(",") ) ) } > "${out_file1}"</command>
9 <inputs> 9 <inputs>
10 <param format="vcf" name="input1" type="data" label="Select VCF dataset" /> 10 <param format="vcf" name="input1" type="data" label="Select VCF dataset" />
11 <param name="vcf_samples" type="select" label="Check to keep samples; Uncheck to remove" display="checkboxes" multiple="true"> 11 <param name="vcf_samples" type="select" label="Check to keep samples; Uncheck to remove" display="checkboxes" multiple="true">
12 <options> 12 <options>
13 <filter type="data_meta" ref="input1" key="sample_names" /> 13 <filter type="data_meta" ref="input1" key="sample_names" />
14 </options> 14 </options>
15 </param> 15 </param>
16 </inputs> 16 </inputs>
17 <outputs> 17 <outputs>
18 <data format="vcf" name="out_file1" /> 18 <data format="vcf" name="out_file1" />
19 </outputs> 19 </outputs>
20 <tests> 20 <tests>