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comparison vcfsort.xml @ 1:40296713cd82 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfsort commit 0b9b6512272b82637c2f1e831367e89aed77ae79
author devteam
date Thu, 15 Sep 2016 16:53:50 -0400
parents 433d50620231
children a8c5440d69e3
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0:433d50620231 1:40296713cd82
1 <tool id="vcfsort" name="VCFsort:" version="0.0.2"> 1 <tool id="vcfsort" name="VCFsort:" version="@WRAPPER_VERSION@.0">
2 <description>Sort VCF dataset by coordinate</description> 2 <description>Sort VCF dataset by coordinate</description>
3 <command>(grep ^"#" "${input1}"; grep -v ^"#" "${input1}" | LC_ALL=C sort -k1,1 -k2,2n -V) > "${out_file1}"</command> 3 <command>(grep ^"#" "${input1}"; grep -v ^"#" "${input1}" | LC_ALL=C sort -k1,1 -k2,2n -V) > "${out_file1}"</command>
4 <inputs> 4 <inputs>
5 <param format="vcf" name="input1" type="data" label="Select VCF dataset"/> 5 <param format="vcf" name="input1" type="data" label="Select VCF dataset"/>
6 </inputs> 6 </inputs>