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comparison vcfsort.xml @ 2:a8c5440d69e3 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfsort commit b94a1012a2c76e77564f504543e90a692a8de562
author devteam
date Mon, 03 Oct 2016 11:23:06 -0400
parents 40296713cd82
children 5b7120c66efc
comparison
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1:40296713cd82 2:a8c5440d69e3
1 <tool id="vcfsort" name="VCFsort:" version="@WRAPPER_VERSION@.0"> 1 <tool id="vcfsort" name="VCFsort:" version="@WRAPPER_VERSION@.0">
2 <description>Sort VCF dataset by coordinate</description> 2 <description>Sort VCF dataset by coordinate</description>
3 <macros>
4 <import>macros.xml</import>
5 </macros>
3 <command>(grep ^"#" "${input1}"; grep -v ^"#" "${input1}" | LC_ALL=C sort -k1,1 -k2,2n -V) > "${out_file1}"</command> 6 <command>(grep ^"#" "${input1}"; grep -v ^"#" "${input1}" | LC_ALL=C sort -k1,1 -k2,2n -V) > "${out_file1}"</command>
4 <inputs> 7 <inputs>
5 <param format="vcf" name="input1" type="data" label="Select VCF dataset"/> 8 <param format="vcf" name="input1" type="data" label="Select VCF dataset"/>
6 </inputs> 9 </inputs>
7 <outputs> 10 <outputs>