Mercurial > repos > devteam > vcfsort

comparison vcfsort.xml @ 5:dd44c3f416c3 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/vcflib/vcfsort commit 9a0c41967765d120a8fc519c0c7f09cbe3a6efbe"
author iuc
date Fri, 03 Sep 2021 21:14:45 +0000
parents f0580efedada
children ee60203e68d9
comparison
equal deleted inserted replaced
4:f0580efedada 5:dd44c3f416c3
1 <tool id="vcfsort" name="VCFsort:" version="@WRAPPER_VERSION@+galaxy0"> 1 <tool id="vcfsort" name="VCFsort:" version="@WRAPPER_VERSION@+galaxy0">
2 <description>Sort VCF dataset by coordinate</description> 2 <description>Sort VCF dataset by coordinate</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <requirements>
7 <requirement type="package" version="8.31">coreutils</requirement>
8 </requirements>
6 <command><![CDATA[ 9 <command><![CDATA[
7 (grep ^"#" "${input1}" && grep -v ^"#" "${input1}" | LC_ALL=C sort -k1,1 -k2,2n -V) > '${out_file1}' 10 (grep ^"#" "${input1}" && grep -v ^"#" "${input1}" | LC_ALL=C sort -k1,1 -k2,2n -V) > '${out_file1}'
8 ]]></command> 11 ]]></command>
9 <inputs> 12 <inputs>
10 <param format="vcf" name="input1" type="data" label="Select VCF dataset"/> 13 <param format="vcf" name="input1" type="data" label="Select VCF dataset"/>