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diff vcfsort.xml @ 2:a8c5440d69e3 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/vcflib/vcfsort commit b94a1012a2c76e77564f504543e90a692a8de562
author devteam
date Mon, 03 Oct 2016 11:23:06 -0400
parents 40296713cd82
children 5b7120c66efc
line wrap: on
line diff
--- a/vcfsort.xml	Thu Sep 15 16:53:50 2016 -0400
+++ b/vcfsort.xml	Mon Oct 03 11:23:06 2016 -0400
@@ -1,5 +1,8 @@
 <tool id="vcfsort" name="VCFsort:" version="@WRAPPER_VERSION@.0">
   <description>Sort VCF dataset by coordinate</description>
+  <macros>
+    <import>macros.xml</import>
+  </macros>
   <command>(grep ^"#" "${input1}"; grep -v ^"#" "${input1}" | LC_ALL=C sort -k1,1 -k2,2n -V) > "${out_file1}"</command>
   <inputs>
     <param format="vcf" name="input1" type="data" label="Select VCF dataset"/>