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comparison vcftools_annotate.xml @ 1:db407a47527b draft

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author devteam
date Fri, 14 Feb 2014 14:21:38 -0500
parents bc178c43e4fe
children 57a6550df582
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0:bc178c43e4fe 1:db407a47527b
2 <description>a VCF dataset with custom filters</description> 2 <description>a VCF dataset with custom filters</description>
3 3
4 <requirements> 4 <requirements>
5 <requirement type="binary">echo</requirement> 5 <requirement type="binary">echo</requirement>
6 <requirement type="package" version="0.1.11">vcftools</requirement> 6 <requirement type="package" version="0.1.11">vcftools</requirement>
7 <requirement type="set_environment">PERL5LIB</requirement>
7 </requirements> 8 </requirements>
8 9
9 <command> 10 <command>
10 ## Generate filter file. 11 ## Generate filter file.
11 echo "{ tag => '${tag}', name => '${filter}', desc => '${description}', test => sub { my @t = split('%', @\\$MATCH[0]); return @t[0] $condition ? \\$PASS : \\$FAIL }, }," > f.txt ; 12 echo "{ tag => '${tag}', name => '${filter}', desc => '${description}', test => sub { my @t = split('%', @\\$MATCH[0]); return @t[0] $condition ? \\$PASS : \\$FAIL }, }," > f.txt ;