Mercurial > repos > devteam > weblogo3

comparison rgWebLogo3.py @ 4:c1a9e644d580 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/weblogo3 commit b3b7a9898eb2b5d12745ef96250b04955bd1e209
author devteam
date Thu, 03 Dec 2015 15:55:38 -0500
parents 66253fc0a69b
children dc25a5169a91
comparison
equal deleted inserted replaced
3:3179d17dc6e5 4:c1a9e644d580
103 flen = seqlen 103 flen = seqlen
104 else: 104 else:
105 if seqlen <> flen: 105 if seqlen <> flen:
106 print >> sys.stderr,self.badseq % self.opts.input 106 print >> sys.stderr,self.badseq % self.opts.input
107 sys.exit(1) 107 sys.exit(1)
108 return '# weblogo input %s has %d sequences all of length %d' % (self.opts.input,lasti,flen) 108 return '# weblogo input %s has %d sequences all of length %d' % (self.opts.input, lasti+1, flen)
109 109
110 110
111 def run(self): 111 def run(self):
112 check = self.fcheck() 112 check = self.fcheck()
113 self.clparams['-f'] = self.opts.input 113 self.clparams['-f'] = self.opts.input