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comparison WeightedAverage.xml @ 1:90611e86a998 draft

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Uploaded corrected tool requirements definition.
author devteam
date Thu, 03 Apr 2014 09:34:41 -0400
parents 9b7b4009f2c0
children efa2b391e887
comparison
equal deleted inserted replaced
0:9b7b4009f2c0 1:90611e86a998
1 <tool id="wtavg" name="Assign weighted-average" version="1.0.0"> 1 <tool id="wtavg" name="Assign weighted-average" version="1.0.0">
2 <description> of the values of features overlapping an interval </description> 2 <description> of the values of features overlapping an interval </description>
3 <requirements>
4 <requirement type="package" version="1.0.0">galaxy-ops</requirement>
5 <requirement type="package" version="0.7.1">bx-python</requirement>
6 </requirements>
3 <command interpreter="python">WeightedAverage.py $genomic_interval $genomic_feature $out_file1 -1 ${genomic_interval.metadata.chromCol},${genomic_interval.metadata.startCol},${genomic_interval.metadata.endCol},${genomic_interval.metadata.strandCol} -2 ${genomic_feature.metadata.chromCol},${genomic_feature.metadata.startCol},${genomic_feature.metadata.endCol},${genomic_feature.metadata.strandCol},${genomic_feature.metadata.nameCol}</command> 7 <command interpreter="python">WeightedAverage.py $genomic_interval $genomic_feature $out_file1 -1 ${genomic_interval.metadata.chromCol},${genomic_interval.metadata.startCol},${genomic_interval.metadata.endCol},${genomic_interval.metadata.strandCol} -2 ${genomic_feature.metadata.chromCol},${genomic_feature.metadata.startCol},${genomic_feature.metadata.endCol},${genomic_feature.metadata.strandCol},${genomic_feature.metadata.nameCol}</command>
4 8
5 <inputs> 9 <inputs>
6 <param format="interval" name="genomic_interval" type="data" label="Genomic intervals (first dataset)" help="Dataset missing? See Note below."/> 10 <param format="interval" name="genomic_interval" type="data" label="Genomic intervals (first dataset)" help="Dataset missing? See Note below."/>
7 <param format="interval" name="genomic_feature" label="Genomic features (second dataset)" type="data" help="Make sure the value column is specified. See Note below." /> 11 <param format="interval" name="genomic_feature" label="Genomic features (second dataset)" type="data" help="Make sure the value column is specified. See Note below." />