Mercurial > repos > devteam > weightedaverage

changeset 1:90611e86a998 draft

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Uploaded corrected tool requirements definition.
author devteam
date Thu, 03 Apr 2014 09:34:41 -0400
parents 9b7b4009f2c0
children efa2b391e887
files WeightedAverage.py WeightedAverage.xml tool_dependencies.xml
diffstat 3 files changed, 13 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/WeightedAverage.py	Tue Apr 01 10:48:52 2014 -0400
+++ b/WeightedAverage.py	Thu Apr 03 09:34:41 2014 -0400
@@ -7,10 +7,6 @@
 
 import collections
 import sys
-#import numpy
-from galaxy import eggs
-import pkg_resources
-pkg_resources.require( "bx-python" )
 from galaxy.tools.util.galaxyops import *
 from bx.cookbook import doc_optparse
 
--- a/WeightedAverage.xml	Tue Apr 01 10:48:52 2014 -0400
+++ b/WeightedAverage.xml	Thu Apr 03 09:34:41 2014 -0400
@@ -1,5 +1,9 @@
 <tool id="wtavg" name="Assign weighted-average" version="1.0.0">
   <description> of the values of features overlapping an interval </description>
+  <requirements>
+    <requirement type="package" version="1.0.0">galaxy-ops</requirement>
+    <requirement type="package" version="0.7.1">bx-python</requirement>
+  </requirements>
   <command interpreter="python">WeightedAverage.py  $genomic_interval $genomic_feature $out_file1 -1 ${genomic_interval.metadata.chromCol},${genomic_interval.metadata.startCol},${genomic_interval.metadata.endCol},${genomic_interval.metadata.strandCol} -2 ${genomic_feature.metadata.chromCol},${genomic_feature.metadata.startCol},${genomic_feature.metadata.endCol},${genomic_feature.metadata.strandCol},${genomic_feature.metadata.nameCol}</command>
 
   <inputs>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Apr 03 09:34:41 2014 -0400
@@ -0,0 +1,9 @@
+<?xml version="1.0"?>
+<tool_dependency>
+  <package name="bx-python" version="0.7.1">
+      <repository changeset_revision="2d0c08728bca" name="package_bx_python_0_7" owner="devteam" prior_installation_required="False" toolshed="http://toolshed.g2.bx.psu.edu" />
+    </package>
+  <package name="galaxy-ops" version="1.0.0">
+      <repository changeset_revision="4e39032e4ec6" name="package_galaxy_ops_1_0_0" owner="devteam" prior_installation_required="False" toolshed="http://toolshed.g2.bx.psu.edu" />
+    </package>
+</tool_dependency>