Mercurial > repos > dfornika > data_manager_build_kraken2_database

annotate data_manager_conf.xml @ 6:ce101123d015 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit 47bcc8467200adee842a5574b67bc6ef46c0be71-dirty
author dfornika
date Mon, 04 Mar 2019 19:01:17 -0500
parents 1f6fe9dc5490
children ae6180bdb1e9
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
7e43f66abe9d planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit cc42cd530378bfa3df83b08b6b41aaf2f5072b49-dirty
dfornika
parents:
diff changeset
1 <data_managers>
7e43f66abe9d planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit cc42cd530378bfa3df83b08b6b41aaf2f5072b49-dirty
dfornika
parents:
diff changeset
2 <data_manager tool_file="data_manager/kraken2_build_standard.xml" id="kraken2_build_standard" version="1.0">
7e43f66abe9d planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit cc42cd530378bfa3df83b08b6b41aaf2f5072b49-dirty
dfornika
parents:
diff changeset
3 <data_table name="kraken2_databases">
7e43f66abe9d planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit cc42cd530378bfa3df83b08b6b41aaf2f5072b49-dirty
dfornika
parents:
diff changeset
4 <output>
7e43f66abe9d planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit cc42cd530378bfa3df83b08b6b41aaf2f5072b49-dirty
dfornika
parents:
diff changeset
5 <column name="value"/>
7e43f66abe9d planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit cc42cd530378bfa3df83b08b6b41aaf2f5072b49-dirty
dfornika
parents:
diff changeset
6 <column name="name"/>
7e43f66abe9d planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit cc42cd530378bfa3df83b08b6b41aaf2f5072b49-dirty
dfornika
parents:
diff changeset
7 <column name="path" output_ref="out_file">
7e43f66abe9d planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit cc42cd530378bfa3df83b08b6b41aaf2f5072b49-dirty
dfornika
parents:
diff changeset
8 <move type="directory" relativize_symlinks="True">
5
1f6fe9dc5490 planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit 47bcc8467200adee842a5574b67bc6ef46c0be71-dirty
dfornika
parents: 3
diff changeset
9 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases</target>
0
7e43f66abe9d planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit cc42cd530378bfa3df83b08b6b41aaf2f5072b49-dirty
dfornika
parents:
diff changeset
10 </move>
5
1f6fe9dc5490 planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit 47bcc8467200adee842a5574b67bc6ef46c0be71-dirty
dfornika
parents: 3
diff changeset
11 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases</value_translation>
0
7e43f66abe9d planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit cc42cd530378bfa3df83b08b6b41aaf2f5072b49-dirty
dfornika
parents:
diff changeset
12 <value_translation type="function">abspath</value_translation>
7e43f66abe9d planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit cc42cd530378bfa3df83b08b6b41aaf2f5072b49-dirty
dfornika
parents:
diff changeset
13 </column>
7e43f66abe9d planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit cc42cd530378bfa3df83b08b6b41aaf2f5072b49-dirty
dfornika
parents:
diff changeset
14 </output>
7e43f66abe9d planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit cc42cd530378bfa3df83b08b6b41aaf2f5072b49-dirty
dfornika
parents:
diff changeset
15 </data_table>
7e43f66abe9d planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit cc42cd530378bfa3df83b08b6b41aaf2f5072b49-dirty
dfornika
parents:
diff changeset
16 </data_manager>
3
b03007bc0f05 planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit f05f93ee024df8b38efa1c92db9785d52c726f85-dirty
dfornika
parents: 0
diff changeset
17 <data_manager tool_file="data_manager/kraken2_build_custom.xml" id="kraken2_build_custom" version="1.0">
b03007bc0f05 planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit f05f93ee024df8b38efa1c92db9785d52c726f85-dirty
dfornika
parents: 0
diff changeset
18 <data_table name="kraken2_databases">
b03007bc0f05 planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit f05f93ee024df8b38efa1c92db9785d52c726f85-dirty
dfornika
parents: 0
diff changeset
19 <output>
b03007bc0f05 planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit f05f93ee024df8b38efa1c92db9785d52c726f85-dirty
dfornika
parents: 0
diff changeset
20 <column name="value"/>
b03007bc0f05 planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit f05f93ee024df8b38efa1c92db9785d52c726f85-dirty
dfornika
parents: 0
diff changeset
21 <column name="name"/>
b03007bc0f05 planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit f05f93ee024df8b38efa1c92db9785d52c726f85-dirty
dfornika
parents: 0
diff changeset
22 <column name="path" output_ref="out_file">
b03007bc0f05 planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit f05f93ee024df8b38efa1c92db9785d52c726f85-dirty
dfornika
parents: 0
diff changeset
23 <move type="directory" relativize_symlinks="True">
5
1f6fe9dc5490 planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit 47bcc8467200adee842a5574b67bc6ef46c0be71-dirty
dfornika
parents: 3
diff changeset
24 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases</target>
3
b03007bc0f05 planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit f05f93ee024df8b38efa1c92db9785d52c726f85-dirty
dfornika
parents: 0
diff changeset
25 </move>
5
1f6fe9dc5490 planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit 47bcc8467200adee842a5574b67bc6ef46c0be71-dirty
dfornika
parents: 3
diff changeset
26 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases</value_translation>
3
b03007bc0f05 planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit f05f93ee024df8b38efa1c92db9785d52c726f85-dirty
dfornika
parents: 0
diff changeset
27 <value_translation type="function">abspath</value_translation>
b03007bc0f05 planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit f05f93ee024df8b38efa1c92db9785d52c726f85-dirty
dfornika
parents: 0
diff changeset
28 </column>
b03007bc0f05 planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit f05f93ee024df8b38efa1c92db9785d52c726f85-dirty
dfornika
parents: 0
diff changeset
29 </output>
b03007bc0f05 planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit f05f93ee024df8b38efa1c92db9785d52c726f85-dirty
dfornika
parents: 0
diff changeset
30 </data_table>
b03007bc0f05 planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit f05f93ee024df8b38efa1c92db9785d52c726f85-dirty
dfornika
parents: 0
diff changeset
31 </data_manager>
0
7e43f66abe9d planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit cc42cd530378bfa3df83b08b6b41aaf2f5072b49-dirty
dfornika
parents:
diff changeset
32 </data_managers>