Mercurial > repos > dfornika > data_manager_build_kraken2_database

comparison data_manager_conf.xml @ 17:4c9f9d6098eb draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit db9eb9472b9f6caea6a0755697ee8d3a93e85b5b-dirty
author dfornika
date Mon, 06 May 2019 19:42:14 -0400
parents 039a65ff445d
children f005b6efd096
comparison
equal deleted inserted replaced
16:d9f190088154 17:4c9f9d6098eb
1 <data_managers> 1 <data_managers>
2 <data_manager tool_file="data_manager/kraken2_build_standard.xml" id="kraken2_build_standard" version="1.0"> 2 <data_manager tool_file="data_manager/kraken2_build_database.xml" id="kraken2_build_database" version="1.0">
3 <data_table name="kraken2_databases"> 3 <data_table name="kraken2_databases">
4 <output> 4 <output>
5 <column name="value"/> 5 <column name="value"/>
6 <column name="name"/> 6 <column name="name"/>
7 <column name="path" output_ref="out_file"> 7 <column name="path" output_ref="out_file">
13 <value_translation type="function">abspath</value_translation> 13 <value_translation type="function">abspath</value_translation>
14 </column> 14 </column>
15 </output> 15 </output>
16 </data_table> 16 </data_table>
17 </data_manager> 17 </data_manager>
18 <data_manager tool_file="data_manager/kraken2_build_custom.xml" id="kraken2_build_custom" version="1.0">
19 <data_table name="kraken2_databases">
20 <output>
21 <column name="value"/>
22 <column name="name"/>
23 <column name="path" output_ref="out_file">
24 <move type="directory">
25 <source>${path}</source>
26 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases/${path}</target>
27 </move>
28 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases/${path}</value_translation>
29 <value_translation type="function">abspath</value_translation>
30 </column>
31 </output>
32 </data_table>
33 </data_manager>
34 <data_manager tool_file="data_manager/kraken2_build_special.xml" id="kraken2_build_special" version="1.0">
35 <data_table name="kraken2_databases">
36 <output>
37 <column name="value"/>
38 <column name="name"/>
39 <column name="path" output_ref="out_file">
40 <move type="directory">
41 <source>${path}</source>
42 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases/${path}</target>
43 </move>
44 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases/${path}</value_translation>
45 <value_translation type="function">abspath</value_translation>
46 </column>
47 </output>
48 </data_table>
49 </data_manager>
50 <data_manager tool_file="data_manager/kraken2_build_minikraken.xml" id="kraken2_build_minikraken" version="1.0">
51 <data_table name="kraken2_databases">
52 <output>
53 <column name="value"/>
54 <column name="name"/>
55 <column name="path" output_ref="out_file">
56 <move type="directory">
57 <source>${path}</source>
58 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases/${path}</target>
59 </move>
60 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases/${path}</value_translation>
61 <value_translation type="function">abspath</value_translation>
62 </column>
63 </output>
64 </data_table>
65 </data_manager>
66 </data_managers> 18 </data_managers>