Mercurial > repos > dfornika > data_manager_build_kraken2_database

comparison data_manager/kraken2_build_minikraken.py @ 16:d9f190088154 draft

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planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit 70494d589aa1990618ebc7a895e91477d41c3203-dirty
author dfornika
date Tue, 05 Mar 2019 16:45:43 -0500
parents 9385ea32f9ac
children
comparison
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15:9385ea32f9ac 16:d9f190088154
45 'https://ccb.jhu.edu/software/kraken2/dl/minikraken2_' + minikraken2_version + '_8GB.tgz' 45 'https://ccb.jhu.edu/software/kraken2/dl/minikraken2_' + minikraken2_version + '_8GB.tgz'
46 ] 46 ]
47 47
48 run(['wget'] + args, target_directory) 48 run(['wget'] + args, target_directory)
49 49
50 args = [
51 '-p',
52 database_path,
53 ]
54
55 run(['mkdir'] + args, target_directory)
56
50 args = [ 57 args = [
51 '-xvzf', 58 '-xvzf',
52 'minikraken2_' + minikraken2_version + '_8GB.tgz', 59 'minikraken2_' + minikraken2_version + '_8GB.tgz',
53 '-C', 60 '-C',
54 database_path, 61 database_path,