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planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit cc42cd530378bfa3df83b08b6b41aaf2f5072b49-dirty
author dfornika
date Thu, 28 Feb 2019 02:32:38 -0500
parents
children b03007bc0f05
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<data_managers>
    <data_manager tool_file="data_manager/kraken2_custom_database_builder.xml" id="kraken2_custom_database_builder" version="1.0">
	<data_table name="kraken2_databases">
	    <output>
		<column name="value"/>
		<column name="name"/>
		<column name="path" output_ref="out_file">
		    <move type="directory" relativize_symlinks="True">
			<target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_database/${value}</target>
		    </move>
		    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_database/${value}</value_translation>
		    <value_translation type="function">abspath</value_translation>
		</column>
	    </output>
	</data_table>
    </data_manager>
    <data_manager tool_file="data_manager/kraken2_standard_database_builder.xml" id="kraken2_standard_database_builder" version="1.0">
	<data_table name="kraken2_databases">
	    <output>
		<column name="value"/>
		<column name="name"/>
		<column name="path" output_ref="out_file">
		    <move type="directory" relativize_symlinks="True">
			<target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_database/${value}</target>
		    </move>
		    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_database/${value}</value_translation>
		    <value_translation type="function">abspath</value_translation>
		</column>
	    </output>
	</data_table>
    </data_manager>
    <data_manager tool_file="data_manager/kraken2_build_standard.xml" id="kraken2_build_standard" version="1.0">
	<data_table name="kraken2_databases">
	    <output>
		<column name="value"/>
		<column name="name"/>
		<column name="path" output_ref="out_file">
		    <move type="directory" relativize_symlinks="True">
			<target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_database/${value}</target>
		    </move>
		    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_database/${value}</value_translation>
		    <value_translation type="function">abspath</value_translation>
		</column>
	    </output>
	</data_table>
    </data_manager>
</data_managers>