# HG changeset patch
# User dfornika
# Date 1551466917 18000
# Node ID 988c436ad798bb4079749445dbf70a32d2182906
# Parent  b03007bc0f0564bb264c52b968d44b18c6201262
planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit f05f93ee024df8b38efa1c92db9785d52c726f85-dirty

diff -r b03007bc0f05 -r 988c436ad798 data_manager/kraken2_build_custom.py
--- a/data_manager/kraken2_build_custom.py	Thu Feb 28 18:55:04 2019 -0500
+++ b/data_manager/kraken2_build_custom.py	Fri Mar 01 14:01:57 2019 -0500
@@ -34,7 +34,7 @@
         '--db', database_name
     ]
     
-    run(args, target_directory)
+    # run(args, target_directory)
     
     args = [
         'kraken2-build',
diff -r b03007bc0f05 -r 988c436ad798 data_manager/kraken2_build_custom.xml
--- a/data_manager/kraken2_build_custom.xml	Thu Feb 28 18:55:04 2019 -0500
+++ b/data_manager/kraken2_build_custom.xml	Fri Mar 01 14:01:57 2019 -0500
@@ -7,13 +7,13 @@
     <version_command>kraken2 -version | head -n 1 | awk '{print $NF}'</version_command>
     <command detect_errors="exit_code">
     <![CDATA[
-        python '$__tool_directory__/kraken2_build_standard.py'
+        python '$__tool_directory__/kraken2_build_custom.py'
           '${out_file}'
           --threads \${GALAXY_SLOTS:-1}
-          --fasta ${input_fasta}
           --kmer-len ${kmer_len}
           --minimizer-len ${minimizer_len}
           --minimizer-spaces ${minimizer_spaces}
+          --fasta ${input_fasta}
     ]]>
     </command>
     <inputs>