Mercurial > repos > dfornika > kraken2

comparison macros.xml @ 1:7932d09da19b draft

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planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/kraken2 commit 593a4002db3f2513974809a94db514c05fa589f6-dirty
author dfornika
date Mon, 04 Mar 2019 14:47:57 -0500
parents a77e88d426d9
children f8683d234222
comparison
equal deleted inserted replaced
0:a77e88d426d9 1:7932d09da19b
8 <options from_data_table="kraken2_databases"> 8 <options from_data_table="kraken2_databases">
9 <validator message="No Kraken2 database is available" type="no_options" /> 9 <validator message="No Kraken2 database is available" type="no_options" />
10 </options> 10 </options>
11 </param> 11 </param>
12 </xml> 12 </xml>
13 <token name="@SET_DATABASE_PATH@">if [ -d '${kraken2_database.fields.path}/${kraken2_database.fields.name}' ]; then export KRAKEN2_DEFAULT_DB='${kraken2_database.fields.path}/${kraken2_database.fields.name}'; else export KRAKEN2_DEFAULT_DB='${kraken_database.fields.path}'; fi</token>
14 <token name="@INPUT_DATABASE@">--db "\$KRAKEN2_DEFAULT_DB"</token>
15 </macros> 13 </macros>