Mercurial > repos > dfornika > kraken2

comparison macros.xml @ 0:a77e88d426d9 draft

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planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/kraken2 commit f05f93ee024df8b38efa1c92db9785d52c726f85-dirty
author dfornika
date Fri, 01 Mar 2019 12:43:26 -0500
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children 7932d09da19b
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-1:000000000000 0:a77e88d426d9
1 <macros>
2 <token name="@TOOL_VERSION@">2.0.7_beta</token>
3 <token name="@INTYPES@">
4 fasta,fasta.gz,fastq,fastq.gz,fastqsanger,fastqsanger.gz
5 </token>
6 <xml name="input_database">
7 <param label="Select a Kraken2 database" name="kraken2_database" type="select">
8 <options from_data_table="kraken2_databases">
9 <validator message="No Kraken2 database is available" type="no_options" />
10 </options>
11 </param>
12 </xml>
13 <token name="@SET_DATABASE_PATH@">if [ -d '${kraken2_database.fields.path}/${kraken2_database.fields.name}' ]; then export KRAKEN2_DEFAULT_DB='${kraken2_database.fields.path}/${kraken2_database.fields.name}'; else export KRAKEN2_DEFAULT_DB='${kraken_database.fields.path}'; fi</token>
14 <token name="@INPUT_DATABASE@">--db "\$KRAKEN2_DEFAULT_DB"</token>
15 </macros>