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comparison kraken2.xml @ 9:a811afe91eab draft

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planemo upload for repository https://github.com/dfornika/galaxytools/blob/master/tools/kraken2 commit 593a4002db3f2513974809a94db514c05fa589f6-dirty
author dfornika
date Mon, 04 Mar 2019 17:21:42 -0500
parents d120504e741a
children a74785cdf5e3
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8:d120504e741a 9:a811afe91eab
7 <requirement type="package" version="@TOOL_VERSION@">kraken2</requirement> 7 <requirement type="package" version="@TOOL_VERSION@">kraken2</requirement>
8 </requirements> 8 </requirements>
9 <version_command>kraken2 --version</version_command> 9 <version_command>kraken2 --version</version_command>
10 <command detect_errors="exit_code"> 10 <command detect_errors="exit_code">
11 <![CDATA[ 11 <![CDATA[
12 @SET_DATABASE_PATH@ 12 @SET_DATABASE_PATH@ &&
13 kraken2 13 kraken2
14 --threads \${GALAXY_SLOTS:-1} 14 --threads \${GALAXY_SLOTS:-1}
15 --db '$kraken2_database' 15 --db '$kraken2_database'
16 #if $single_paired.single_paired_selector == 'yes' 16 #if $single_paired.single_paired_selector == 'yes'
17 '${single_paired.forward_input}' '${single_paired.reverse_input}' 17 '${single_paired.forward_input}' '${single_paired.reverse_input}'