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comparison data_managers/data_manager_conf.xml @ 1:c6a98b93e569 draft

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planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 83ebe793451a5ccbfeff873eda359f699e14ae1e
author dfornika
date Sat, 24 Mar 2018 23:12:21 -0400
parents 1d9e3950ce61
children 4ea71c8e2db0
comparison
equal deleted inserted replaced
0:1d9e3950ce61 1:c6a98b93e569
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <data_managers> 2 <data_managers>
3 <data_manager tool_file="data_manager_mentalist_build_db/data_manager/mentalist_build_db.xml" id="mentalist_build_db" version="0.1.3"> 3 <data_manager tool_file="data_manager_mentalist_build_db/data_manager/mentalist_build_db.xml" id="mentalist_build_db" version="0.2.2">
4 <data_table name="mentalist_databases"> 4 <data_table name="mentalist_databases">
5 <output> 5 <output>
6 <column name="value" /> 6 <column name="value" />
7 <column name="name" /> 7 <column name="name" />
8 <column name="path" output_ref="out_file"> 8 <column name="path" output_ref="out_file">
13 <value_translation type="function">abspath</value_translation> 13 <value_translation type="function">abspath</value_translation>
14 </column> 14 </column>
15 </output> 15 </output>
16 </data_table> 16 </data_table>
17 </data_manager> 17 </data_manager>
18 <data_manager tool_file="data_manager_mentalist_download_cgmlst/data_manager/mentalist_download_cgmlst.xml" id="mentalist_download_cgmlst" version="0.1.3"> 18 <data_manager tool_file="data_manager_mentalist_download_cgmlst/data_manager/mentalist_download_cgmlst.xml" id="mentalist_download_cgmlst" version="0.2.2">
19 <data_table name="mentalist_databases"> 19 <data_table name="mentalist_databases">
20 <output> 20 <output>
21 <column name="value" /> 21 <column name="value" />
22 <column name="name" /> 22 <column name="name" />
23 <column name="path" output_ref="out_file"> 23 <column name="path" output_ref="out_file">
28 <value_translation type="function">abspath</value_translation> 28 <value_translation type="function">abspath</value_translation>
29 </column> 29 </column>
30 </output> 30 </output>
31 </data_table> 31 </data_table>
32 </data_manager> 32 </data_manager>
33 <data_manager tool_file="data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.xml" id="mentalist_download_pubmlst" version="0.1.3"> 33 <data_manager tool_file="data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.xml" id="mentalist_download_pubmlst" version="0.2.2">
34 <data_table name="mentalist_databases">
35 <output>
36 <column name="value" />
37 <column name="name" />
38 <column name="path" output_ref="out_file">
39 <move type="directory" relativize_symlinks="True">
40 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mentalist_databases/${value}</target>
41 </move>
42 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mentalist_databases/${value}/${path}</value_translation>
43 <value_translation type="function">abspath</value_translation>
44 </column>
45 </output>
46 </data_table>
47 </data_manager>
48 <data_manager tool_file="data_manager_mentalist_download_enterobase/data_manager/mentalist_download_enterobase.xml" id="mentalist_download_enterobase" version="0.2.2">
34 <data_table name="mentalist_databases"> 49 <data_table name="mentalist_databases">
35 <output> 50 <output>
36 <column name="value" /> 51 <column name="value" />
37 <column name="name" /> 52 <column name="name" />
38 <column name="path" output_ref="out_file"> 53 <column name="path" output_ref="out_file">