Mercurial > repos > dfornika > mentalist

diff data_managers/data_manager_conf.xml @ 0:1d9e3950ce61 draft

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planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 77d12d12820477cdb046be90175f5d2dab52e620
author dfornika
date Wed, 20 Dec 2017 17:36:03 -0500
parents
children c6a98b93e569
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_managers/data_manager_conf.xml	Wed Dec 20 17:36:03 2017 -0500
@@ -0,0 +1,48 @@
+<?xml version="1.0"?>
+<data_managers>
+  <data_manager tool_file="data_manager_mentalist_build_db/data_manager/mentalist_build_db.xml" id="mentalist_build_db" version="0.1.3">
+    <data_table name="mentalist_databases">
+      <output>
+        <column name="value" />
+        <column name="name" />
+        <column name="path" output_ref="out_file">
+          <move type="directory" relativize_symlinks="True">
+            <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mentalist_databases/${value}</target>
+          </move>
+          <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mentalist_databases/${value}/${path}</value_translation>
+          <value_translation type="function">abspath</value_translation>
+        </column>
+      </output>
+    </data_table>
+  </data_manager>
+  <data_manager tool_file="data_manager_mentalist_download_cgmlst/data_manager/mentalist_download_cgmlst.xml" id="mentalist_download_cgmlst" version="0.1.3">
+    <data_table name="mentalist_databases">
+      <output>
+        <column name="value" />
+        <column name="name" />
+        <column name="path" output_ref="out_file">
+          <move type="directory" relativize_symlinks="True">
+            <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mentalist_databases/${value}</target>
+          </move>
+          <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mentalist_databases/${value}/${path}</value_translation>
+          <value_translation type="function">abspath</value_translation>
+        </column>
+      </output>
+    </data_table>
+  </data_manager>
+  <data_manager tool_file="data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.xml" id="mentalist_download_pubmlst" version="0.1.3">
+    <data_table name="mentalist_databases">
+      <output>
+        <column name="value" />
+        <column name="name" />
+        <column name="path" output_ref="out_file">
+          <move type="directory" relativize_symlinks="True">
+            <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mentalist_databases/${value}</target>
+          </move>
+          <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mentalist_databases/${value}/${path}</value_translation>
+          <value_translation type="function">abspath</value_translation>
+        </column>
+      </output>
+    </data_table>
+  </data_manager>
+</data_managers>