Mercurial > repos > dfornika > mentalist
view data_managers/data_manager_mentalist_build_db/data_manager/mentalist_build_db.xml @ 1:c6a98b93e569 draft
planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 83ebe793451a5ccbfeff873eda359f699e14ae1e
author | dfornika |
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date | Sat, 24 Mar 2018 23:12:21 -0400 |
parents | 1d9e3950ce61 |
children | 4ea71c8e2db0 |
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<?xml version="1.0"?> <tool id="mentalist_build_db" name="MentaLiST Build DB" tool_type="manage_data" version="0.2.2"> <requirements> <requirement type="package" version="0.2.2">mentalist</requirement> </requirements> <command detect_errors="exit_code"> <![CDATA[ python '$__tool_directory__/mentalist_build_db.py' '${out_file}' --db '$database_name' -k '$kmer_size' #if $profile --profile '$profile' #end if --fasta_files ${" ".join(map(str, $input_fastas))} ]]> </command> <inputs> <param name="database_name" type="text" label="Database Name" help="Database Name" /> <param name="kmer_size" type="integer" label="Kmer size" help="Kmer size" value="31" min="1" max="32" /> <param name="input_fastas" type="data_collection" collection_type="list" format="fasta" multiple="true" label="Input Fasta" help="Fasta input files" /> <param name="profile" type="data" format="tsv" optional="true" label="Profile" help="Profile for known genotypes" /> </inputs> <outputs> <data name="out_file" format="data_manager_json" /> </outputs> <citations> <citation type="doi">10.1101/172858</citation> <citation type="doi">10.1099/mgen.0.000146</citation> </citations> </tool>