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view data_managers/data_manager_conf.xml @ 2:d465e81782a3 draft

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planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 24d205ed264215a426eb4a52dc95740dd42b3754
author dfornika
date Sat, 24 Mar 2018 23:19:00 -0400
parents c6a98b93e569
children 4ea71c8e2db0
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<?xml version="1.0"?>
<data_managers>
  <data_manager tool_file="data_manager_mentalist_build_db/data_manager/mentalist_build_db.xml" id="mentalist_build_db" version="0.2.2">
    <data_table name="mentalist_databases">
      <output>
        <column name="value" />
        <column name="name" />
        <column name="path" output_ref="out_file">
          <move type="directory" relativize_symlinks="True">
            <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mentalist_databases/${value}</target>
          </move>
          <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mentalist_databases/${value}/${path}</value_translation>
          <value_translation type="function">abspath</value_translation>
        </column>
      </output>
    </data_table>
  </data_manager>
  <data_manager tool_file="data_manager_mentalist_download_cgmlst/data_manager/mentalist_download_cgmlst.xml" id="mentalist_download_cgmlst" version="0.2.2">
    <data_table name="mentalist_databases">
      <output>
        <column name="value" />
        <column name="name" />
        <column name="path" output_ref="out_file">
          <move type="directory" relativize_symlinks="True">
            <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mentalist_databases/${value}</target>
          </move>
          <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mentalist_databases/${value}/${path}</value_translation>
          <value_translation type="function">abspath</value_translation>
        </column>
      </output>
    </data_table>
  </data_manager>
  <data_manager tool_file="data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.xml" id="mentalist_download_pubmlst" version="0.2.2">
    <data_table name="mentalist_databases">
      <output>
        <column name="value" />
        <column name="name" />
        <column name="path" output_ref="out_file">
          <move type="directory" relativize_symlinks="True">
            <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mentalist_databases/${value}</target>
          </move>
          <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mentalist_databases/${value}/${path}</value_translation>
          <value_translation type="function">abspath</value_translation>
        </column>
      </output>
    </data_table>
  </data_manager>
  <data_manager tool_file="data_manager_mentalist_download_enterobase/data_manager/mentalist_download_enterobase.xml" id="mentalist_download_enterobase" version="0.2.2">
    <data_table name="mentalist_databases">
      <output>
        <column name="value" />
        <column name="name" />
        <column name="path" output_ref="out_file">
          <move type="directory" relativize_symlinks="True">
            <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">mentalist_databases/${value}</target>
          </move>
          <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/mentalist_databases/${value}/${path}</value_translation>
          <value_translation type="function">abspath</value_translation>
        </column>
      </output>
    </data_table>
  </data_manager>
</data_managers>