Mercurial > repos > diego > rtg_investigator
annotate tools/rtg/sdf2fasta.xml @ 1:8593828f91e7 default tip
Full galaxy wrapper
| author | diego |
|---|---|
| date | Sat, 21 Apr 2012 21:36:15 -0400 |
| parents | |
| children |
| rev | line source |
|---|---|
| 1 | 1 <tool id="rtg_sdf2fasta" name="Extract FASTA" force_history_refresh="True"> |
| 2 <description>from SDF with sdf2fasta</description> | |
| 3 <command interpreter="bash">galaxy-rtg-sdf2fasta-wrapper.sh $output1 $output1.id $__new_file_path__ | |
| 4 -l $l | |
| 5 -i ${input.extra_files_path} | |
| 6 -Z | |
| 7 </command> | |
| 8 <inputs> | |
| 9 <param name="input" type="data" format="rtg_sdf" label="Source SDF"/> | |
| 10 <param name="l" type="integer" value="80" label="Line length"/> | |
| 11 </inputs> | |
| 12 <outputs> | |
| 13 <data name="output1" format="fasta"/> | |
| 14 </outputs> | |
| 15 | |
| 16 <help> | |
| 17 This tool converts an RTG SDF to FASTA. | |
| 18 </help> | |
| 19 | |
| 20 </tool> |