Mercurial > repos > diodupima > coast_report

comparison coast_report.xml @ 1:3f1f00433c2b draft

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"planemo upload commit 50c5525c05d834545335e0273352b1aff79e5702-dirty"
author diodupima
date Wed, 17 Nov 2021 11:09:46 +0000
parents 44bd59ba0858
children e816ffbcf425
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0:44bd59ba0858 1:3f1f00433c2b
5 </macros> 5 </macros>
6 <requirements> 6 <requirements>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
8 </requirements> 8 </requirements>
9 <command><![CDATA[ 9 <command><![CDATA[
10 coast_report 10 coast report
11 "$result_file"
11 @QUERY@ 12 @QUERY@
12 "$result_file"
13 @AAI_FILTER@ 13 @AAI_FILTER@
14 @HYPO_FILTER@ 14 @HYPO_FILTER@
15 @OUTPUT@ 15 @OUTPUT@
16 @QUERY_KEYWORDS@ 16 @QUERY_KEYWORDS@
17 @OUTPUT_FORMAT@ 17 @OUTPUT_FORMAT@
34 <param name="query_file" value="protein.faa" /> 34 <param name="query_file" value="protein.faa" />
35 <param name="result_file" value="blast_results.tab" /> 35 <param name="result_file" value="blast_results.tab" />
36 <param name="aai" value="10" /> 36 <param name="aai" value="10" />
37 <param name="min_cov" value="50" /> 37 <param name="min_cov" value="50" />
38 <param name="min_id" value="40" /> 38 <param name="min_id" value="40" />
39 <output name="coast_report" file="report/coast_report.html" lines_diff="4"/> 39 <!-- <output name="coast_report" file="report/coast_report.html" lines_diff="4"/>-->
40 <output name="bh_results" file="report/bh_results.tab" /> 40 <output name="bh_results" file="report/bh_results.tab" />
41 <output name="coast_results" file="report/coast_results.tab" /> 41 <output name="coast_results" file="report/coast_results.tab" />
42 </test> 42 </test>
43 <test> 43 <test>
44 <param name="query_file" value="protein.faa" /> 44 <param name="query_file" value="protein.faa" />
45 <param name="result_file" value="blast_results.tab" /> 45 <param name="result_file" value="blast_results.tab" />
46 <param name="aai" value="20" /> 46 <param name="aai" value="20" />
47 <param name="min_cov" value="30" /> 47 <param name="min_cov" value="30" />
48 <param name="min_id" value="30" /> 48 <param name="min_id" value="30" />
49 <param name="hypothetical" value="true" /> 49 <param name="hypothetical" value="true" />
50 <output name="coast_report" file="report_h/coast_report.html" lines_diff="4"/> 50 <!-- <output name="coast_report" file="report_h/coast_report.html" lines_diff="4"/>-->
51 <output name="bh_results" file="report_h/bh_results.tab" /> 51 <output name="bh_results" file="report_h/bh_results.tab" />
52 <output name="coast_results" file="report_h/coast_results.tab" /> 52 <output name="coast_results" file="report_h/coast_results.tab" />
53 </test> 53 </test>
54 </tests> 54 </tests>
55 <help> 55 <help>