# HG changeset patch
# User dktanwar
# Date 1508163656 14400
# Node ID 631ceebd8d165b1a0d04b844bf53b656a240fc56
# Parent  85feee5472d6c8ab943ebd25aaa38f330809ac68
Uploaded

diff -r 85feee5472d6 -r 631ceebd8d16 mismatchRemovalSam.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/mismatchRemovalSam.xml	Mon Oct 16 10:20:56 2017 -0400
@@ -0,0 +1,35 @@
+<tool id="mismatchRemovalSam" name="Remove Mismatches (SNPs) from SAM" version="0.1.0">
+    <requirements>
+    </requirements>
+    <command detect_errors="exit_code"><![CDATA[
+        mismatchRemovalSam "$input1" 3 > "$output1"
+    ]]></command>
+    <inputs>
+        <param type="data" name="input1" format="sam" />
+	<param type="integer" name="SNPs/ mismatches allowed" value="3" />
+    </inputs>
+    <outputs>
+        <data name="output1" format="sam" />
+    </outputs>
+    <tests>
+        <test>
+            <param name="input1" value="input.sam"/>
+            <output name="output1" file="output.sam"/>
+        </test>
+    </tests>
+    <help><![CDATA[
+        /bin/sh: mismatchRemovalSam: command not found
+
+    ]]></help>
+    <citations>
+        <citation type="bibtex">
+@misc{github01_mismatch_removal,
+  author = {LastTODO, FirstTODO},
+  year = {TODO},
+  title = {01_mismatch_removal},
+  publisher = {GitHub},
+  journal = {GitHub repository},
+  url = {https://github.com/dktanwar/Galaxy_Tools/tree/master/01_mismatch_removal},
+}</citation>
+    </citations>
+</tool>