# HG changeset patch
# User dktanwar
# Date 1508164544 14400
# Node ID 7525c61b6e6e40cf68184100ff0c72457ab85845
# Parent  b725dac6f94cfee04c24968d2fc760879e1fa6f2
Uploaded

diff -r b725dac6f94c -r 7525c61b6e6e 01_mismatch_removal/mismatchRemovalSam.xml
--- a/01_mismatch_removal/mismatchRemovalSam.xml	Mon Oct 16 10:21:55 2017 -0400
+++ b/01_mismatch_removal/mismatchRemovalSam.xml	Mon Oct 16 10:35:44 2017 -0400
@@ -2,7 +2,7 @@
     <requirements>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
-        mismatchRemovalSam "$input1" 3 > "$output1"
+        bash $__tool_directory__/mismatchRemovalSam "$input1" 3 > "$output1"
     ]]></command>
     <inputs>
         <param type="data" name="input1" format="sam" />