Mercurial > repos > dktanwar > removesnps
comparison 01_RemoveSNPs/RemoveSNPs.xml @ 0:21aaaa2d3004 draft
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| author | dktanwar |
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| date | Mon, 16 Oct 2017 13:24:04 -0400 |
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| -1:000000000000 | 0:21aaaa2d3004 |
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| 1 <tool id="RemoveSNPs" name="Remove Mismatches (SNPs) from SAM Alignment file" version="0.1.0"> | |
| 2 <requirements> | |
| 3 </requirements> | |
| 4 <command detect_errors="exit_code"><![CDATA[ | |
| 5 bash $__tool_directory__/RemoveSNPs "$input1" 3 > "$output1" | |
| 6 ]]></command> | |
| 7 <inputs> | |
| 8 <param type="data" name="input1" format="sam" /> | |
| 9 <param type="integer" name="SNPs/ mismatches allowed" value="3" /> | |
| 10 </inputs> | |
| 11 <outputs> | |
| 12 <data name="output1" format="sam" /> | |
| 13 </outputs> | |
| 14 <tests> | |
| 15 <test> | |
| 16 <param name="input1" value="input.sam"/> | |
| 17 <output name="output1" file="output.sam"/> | |
| 18 </test> | |
| 19 </tests> | |
| 20 <help><![CDATA[ | |
| 21 This program will remove mismatches from sam file. | |
| 22 Usage: RemoveSNPs test.sam 3 | |
| 23 ]]></help> | |
| 24 <citations> | |
| 25 <citation type="bibtex"> | |
| 26 @misc{RemoveSNPs, | |
| 27 author = {Tanwar, Deepak}, | |
| 28 year = {2017}, | |
| 29 title = {RemoveSNPs}, | |
| 30 publisher = {GitHub}, | |
| 31 journal = {GitHub repository}, | |
| 32 url = {https://github.com/dktanwar/NGS_Sperm_H3K4me3_Planemo_tools/tree/master/01_RemoveSNPs}, | |
| 33 }</citation> | |
| 34 </citations> | |
| 35 </tool> |