Mercurial > repos > dktanwar > removesnps

changeset 3:4930ac95304a draft

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Deleted selected files
author dktanwar
date Mon, 16 Oct 2017 13:45:07 -0400
parents 050a7438485a
children 853b0c9367b6
files RemoveSNPs.xml
diffstat 1 files changed, 0 insertions(+), 34 deletions(-) [+]
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line diff
--- a/RemoveSNPs.xml	Mon Oct 16 13:44:55 2017 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,34 +0,0 @@
-<tool id="RemoveSNPs" name="Remove Mismatches (SNPs) from SAM Alignment file" version="0.1.0">
-    <requirements>
-    </requirements>
-    <command detect_errors="exit_code"><![CDATA[
-        bash $__tool_directory__/RemoveSNPs "$input1" 3 > "$output1"
-    ]]></command>
-    <inputs>
-        <param type="data" name="SAM alignment files" format="sam" />
-	<param type="integer" name="SNPs/ mismatches allowed" value="3" />
-    </inputs>
-    <outputs>
-        <data name="output1" format="sam" />
-    </outputs>
-    <tests>
-        <test>
-            <param name="input1" value="input.sam"/>
-            <output name="output1" file="output.sam"/>
-        </test>
-    </tests>
-    <help><![CDATA[
-        This program will remove mismatches from sam file.\n Usage: RemoveSNPs test.sam 3
-    ]]></help>
-    <citations>
-        <citation type="bibtex">
-@misc{RemoveSNPs,
-  author = {Tanwar, Deepak},
-  year = {2017},
-  title = {RemoveSNPs},
-  publisher = {GitHub},
-  journal = {GitHub repository},
-  url = {https://github.com/dktanwar/NGS_Sperm_H3K4me3_Planemo_tools/tree/master/01_RemoveSNPs},
-}</citation>
-    </citations>
-</tool>