Mercurial > repos > dktanwar > test_csaw_1

comparison csaw.xml @ 9:260c063ab96b draft default tip

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author dktanwar
date Mon, 18 Dec 2017 17:19:41 -0500
parents 100d5eb7bd4d
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8:100d5eb7bd4d 9:260c063ab96b
4 <requirement type="package" version="1.12.0">bioconductor-csaw</requirement> 4 <requirement type="package" version="1.12.0">bioconductor-csaw</requirement>
5 <requirement type="package" version="1.20.0">r-getopt</requirement> 5 <requirement type="package" version="1.20.0">r-getopt</requirement>
6 <requirement type="package" version="1.10.4">r-data.table</requirement> 6 <requirement type="package" version="1.10.4">r-data.table</requirement>
7 <requirement type="package" version="1.2.0">r-stringr</requirement> 7 <requirement type="package" version="1.2.0">r-stringr</requirement>
8 <requirement type="package" version="1.12.0">bioconductor-biocparallel</requirement> 8 <requirement type="package" version="1.12.0">bioconductor-biocparallel</requirement>
9 <requirement type="package" version="1.8.0">bioconductor-summarizedexperiment</requirement> 9 <requirement type="package" version="1.8.0">bioconductor-summarizedexperiment</requirement>
10 <requirement type="package" version="2.38.0">bioconductor-biobase</requirement> 10 <requirement type="package" version="2.38.0">bioconductor-biobase</requirement>
11 <requirement type="package" version="1.30.0">bioconductor-genomicranges</requirement> 11 <requirement type="package" version="1.30.0">bioconductor-genomicranges</requirement>
12 <requirement type="package" version="1.14.0">bioconductor-genomeinfodb</requirement> 12 <requirement type="package" version="1.14.0">bioconductor-genomeinfodb</requirement>
13 <requirement type="package" version="2.12.0">bioconductor-iranges</requirement> 13 <requirement type="package" version="2.12.0">bioconductor-iranges</requirement>
14 <requirement type="package" version="0.16.0">bioconductor-s4vectors</requirement> 14 <requirement type="package" version="0.16.0">bioconductor-s4vectors</requirement>
15 <requirement type="package" version="0.24.0">bioconductor-biocgenerics</requirement> 15 <requirement type="package" version="0.24.0">bioconductor-biocgenerics</requirement>
16 <requirement type="package" version="1.30.0">bioconductor-rsamtools</requirement> 16 <requirement type="package" version="1.30.0">bioconductor-rsamtools</requirement>
17 <requirement type="package" version="2.46.0">bioconductor-biostrings</requirement> 17 <requirement type="package" version="2.46.0">bioconductor-biostrings</requirement>
18 <requirement type="package" version="0.18.0">bioconductor-xvector</requirement> 18 <requirement type="package" version="0.18.0">bioconductor-xvector</requirement>
19 </requirements> 19 </requirements>
20 20
21 <command detect_errors="exit_code"><![CDATA[ 21 <command detect_errors="exit_code"><![CDATA[
22 Rscript $__tool_directory__/csaw.R $inputs $output 22 Rscript $__tool_directory__/csaw.R $inputs $output
23 ]]></command> 23 ]]></command>
25 <inputs> 25 <inputs>
26 <param type="data" name="inputs" format="bam" multiple="True" /> 26 <param type="data" name="inputs" format="bam" multiple="True" />
27 </inputs> 27 </inputs>
28 28
29 <outputs> 29 <outputs>
30 <data name="output" format="txt"/> 30 <data name="output" format="txt" />
31 <collection name="countTables" type="list"> 31 <collection type="list" name="output2">
32 <discover_datasets pattern="(?P&1t;name&gt;.+)\.tsv$" format="tabular" visible="false" /> 32 <discover_datasets pattern="(?P&lt;name&gt;.+)\.tsv$" directory="" />
33 </collection> 33 </collection>
34 </outputs> 34 </outputs>
35 35
36 <tests> 36 <tests>
37 <test> 37 <test>