Mercurial > repos > dktanwar > test_csaw_1

diff csaw.xml @ 9:260c063ab96b draft default tip

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author dktanwar
date Mon, 18 Dec 2017 17:19:41 -0500
parents 100d5eb7bd4d
children
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line diff
--- a/csaw.xml	Mon Dec 18 12:31:46 2017 -0500
+++ b/csaw.xml	Mon Dec 18 17:19:41 2017 -0500
@@ -6,16 +6,16 @@
     <requirement type="package" version="1.10.4">r-data.table</requirement>
     <requirement type="package" version="1.2.0">r-stringr</requirement>
     <requirement type="package" version="1.12.0">bioconductor-biocparallel</requirement>
-<requirement type="package" version="1.8.0">bioconductor-summarizedexperiment</requirement>
-<requirement type="package" version="2.38.0">bioconductor-biobase</requirement>
-<requirement type="package" version="1.30.0">bioconductor-genomicranges</requirement>
-<requirement type="package" version="1.14.0">bioconductor-genomeinfodb</requirement>
-<requirement type="package" version="2.12.0">bioconductor-iranges</requirement>
-<requirement type="package" version="0.16.0">bioconductor-s4vectors</requirement>
-<requirement type="package" version="0.24.0">bioconductor-biocgenerics</requirement>
-<requirement type="package" version="1.30.0">bioconductor-rsamtools</requirement>
-<requirement type="package" version="2.46.0">bioconductor-biostrings</requirement>
-<requirement type="package" version="0.18.0">bioconductor-xvector</requirement>
+    <requirement type="package" version="1.8.0">bioconductor-summarizedexperiment</requirement>
+    <requirement type="package" version="2.38.0">bioconductor-biobase</requirement>
+    <requirement type="package" version="1.30.0">bioconductor-genomicranges</requirement>
+    <requirement type="package" version="1.14.0">bioconductor-genomeinfodb</requirement>
+    <requirement type="package" version="2.12.0">bioconductor-iranges</requirement>
+    <requirement type="package" version="0.16.0">bioconductor-s4vectors</requirement>
+    <requirement type="package" version="0.24.0">bioconductor-biocgenerics</requirement>
+    <requirement type="package" version="1.30.0">bioconductor-rsamtools</requirement>
+    <requirement type="package" version="2.46.0">bioconductor-biostrings</requirement>
+    <requirement type="package" version="0.18.0">bioconductor-xvector</requirement>
   </requirements>
   
   <command detect_errors="exit_code"><![CDATA[
@@ -27,9 +27,9 @@
   </inputs>
   
   <outputs>
-    <data name="output" format="txt"/>
-    <collection name="countTables" type="list">
-      <discover_datasets pattern="(?P&1t;name&gt;.+)\.tsv$" format="tabular"  visible="false" />
+    <data name="output" format="txt" />
+    <collection type="list" name="output2">
+      <discover_datasets pattern="(?P&lt;name&gt;.+)\.tsv$" directory="" />
     </collection>
   </outputs>